Package evaluation of EvoDynamics on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T19:55:16.203 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.73s ################################################################################ # Installation # Installing EvoDynamics... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [c8768967] + EvoDynamics v0.17.0 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [46ada45e] + Agents v5.17.2 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] + ArrayTools v0.2.7 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [c8768967] + EvoDynamics v0.17.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [86223c79] + Graphs v1.12.1 [cd3eb016] + HTTP v1.10.15 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [d1922b25] + LightOSM v0.2.11 [9c8b4983] + LightXML v0.9.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.15 [739be429] + MbedTLS v1.1.9 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.21 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 ⌅ [30b38841] + QuickHeaps v0.1.2 [e6cf234a] + RandomNumbers v1.6.0 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6038ab10] + Rotations v1.7.1 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.1 [d4ead438] + SpatialIndexing v0.1.6 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [4c8beaf5] + StaticGraphs v0.3.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.4.0 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.5.2 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.13 [94ce4f54] + Libiconv_jll v1.18.0+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.39s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 141.42s ################################################################################ # Testing # Testing EvoDynamics Status `/tmp/jl_g1Laa5/Project.toml` ⌅ [46ada45e] Agents v5.17.2 [31c24e10] Distributions v0.25.118 [c8768967] EvoDynamics v0.17.0 [e6cf234a] RandomNumbers v1.6.0 [90137ffa] StaticArrays v1.9.13 ⌅ [2913bbd2] StatsBase v0.33.21 [ddb6d928] YAML v0.4.13 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_g1Laa5/Manifest.toml` ⌅ [46ada45e] Agents v5.17.2 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] ArrayTools v0.2.7 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [c8768967] EvoDynamics v0.17.0 [460bff9d] ExceptionUnwrapping v0.1.11 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [86223c79] Graphs v1.12.1 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [d1922b25] LightOSM v0.2.11 [9c8b4983] LightXML v0.9.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [739be429] MbedTLS v1.1.9 ⌅ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.21 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 ⌅ [30b38841] QuickHeaps v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6038ab10] Rotations v1.7.1 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [d4ead438] SpatialIndexing v0.1.6 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [4c8beaf5] StaticGraphs v0.3.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.4.0 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.13 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [02c8fc9c] XML2_jll v2.13.6+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent!(agent::EvoDynamics.Ind{Float64, StaticArraysCore.MArray{S, Float64, 2} where S<:Tuple, StaticArraysCore.MArray{S, Bool, 2} where S<:Tuple, StaticArraysCore.MArray{S, Float64, 1} where S<:Tuple}, model::Agents.StandardABM{Agents.GridSpace{2, false}, EvoDynamics.Ind{Float64, StaticArraysCore.MArray{S, Float64, 2} where S<:Tuple, StaticArraysCore.MArray{S, Bool, 2} where S<:Tuple, StaticArraysCore.MArray{S, Float64, 1} where S<:Tuple}, typeof(Agents.Schedulers.randomly), EvoDynamics.Params{Float64, Int64, String}, RandomNumbers.Xorshifts.Xoroshiro128Plus}) at simulation.jl:247 └ @ EvoDynamics ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 Test Summary: | Pass Total Time Basic functions | 10 10 26.2s WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time Mutation | 16 16 6.0s WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time Seeding | 2 2 18.4s WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time Interactions | 13 13 1.4s [ Info: Loading the parameters... WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). [ Info: Running the model... run! progress: 14%|█████▏ | ETA: 0:00:11┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 run! progress: 21%|███████▊ | ETA: 0:00:17 run! progress: 29%|██████████▎ | ETA: 0:00:23 run! progress: 36%|████████████▉ | ETA: 0:00:22 run! progress: 43%|███████████████▍ | ETA: 0:00:22 run! progress: 50%|██████████████████ | ETA: 0:00:21 run! progress: 57%|████████████████████▋ | ETA: 0:00:20 run! progress: 64%|███████████████████████▏ | ETA: 0:00:17 run! progress: 71%|█████████████████████████▊ | ETA: 0:00:15 run! progress: 79%|████████████████████████████▎ | ETA: 0:00:12 run! progress: 86%|██████████████████████████████▉ | ETA: 0:00:08 run! progress: 93%|█████████████████████████████████▍ | ETA: 0:00:05 run! progress: 100%|████████████████████████████████████| Time: 0:01:10 Test Summary: | Pass Total Time Model | 2 2 1m26.4s [ Info: Loading the parameters... WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). [ Info: Running the model... WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time replicates | 3 3 3m24.2s Testing EvoDynamics tests passed Testing completed after 367.05s PkgEval succeeded after 532.13s