Package evaluation of EcologicalNetworks on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T12:10:36.964 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.07s ################################################################################ # Installation # Installing EcologicalNetworks... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [f03a62fe] + EcologicalNetworks v0.5.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [861a8166] + Combinatorics v1.0.2 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [f03a62fe] + EcologicalNetworks v0.5.2 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.4.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.43s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 33.17s ################################################################################ # Testing # Testing EcologicalNetworks Status `/tmp/jl_qtbzcL/Project.toml` [f03a62fe] EcologicalNetworks v0.5.2 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_qtbzcL/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [861a8166] Combinatorics v1.0.2 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [f03a62fe] EcologicalNetworks v0.5.2 [1a297f60] FillArrays v1.13.0 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.4.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling EcologicalNetworks... Info Given EcologicalNetworks was explicitly requested, output will be shown live  WARNING: Method definition entropy(NT) where {NT<:EcologicalNetworks.AbstractEcologicalNetwork} in module EcologicalNetworks at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:40 overwritten at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:53. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 4766.8 ms ? EcologicalNetworks WARNING: Method definition entropy(NT) where {NT<:EcologicalNetworks.AbstractEcologicalNetwork} in module EcologicalNetworks at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:40 overwritten at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:53. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition entropy(NT) where {NT<:EcologicalNetworks.AbstractEcologicalNetwork} in module EcologicalNetworks at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:40 overwritten at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:53. ┌ Warning: Replacing docs for `EcologicalNetworks.entropy :: Tuple{NT} where NT<:EcologicalNetworks.AbstractEcologicalNetwork` in module `EcologicalNetworks` └ @ Base.Docs docs/Docs.jl:243 Precompiling DistributionsTestExt... 3350.1 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 4 seconds. 48 already precompiled. [TEST 1] PASS types/declaration.jl [TEST 2] PASS types/utilities.jl [TEST 3] PASS types/conversions.jl [TEST 4] PASS data.jl [TEST 5] PASS links/degree.jl [TEST 6] PASS links/specificity.jl [TEST 7] PASS links/connectance.jl [TEST 8] PASS links/degenerate.jl [TEST 9] PASS rand/draws.jl [TEST 10] PASS rand/shuffle.jl [TEST 11] PASS rand/null.jl [TEST 12] PASS rand/sample.jl [TEST 13] PASS rand/cascademodel.jl [TEST 14] PASS rand/nestedhierarchymodel.jl [TEST 15] PASS rand/nichemodel.jl [TEST 16] PASS rand/mpnmodel.jl [TEST 17] PASS community/nestedness.jl [TEST 18] PASS community/paths.jl [TEST 19] PASS community/overlap.jl [TEST 20] PASS community/centrality.jl [TEST 21] PASS community/motifs.jl [TEST 22] PASS community/foodwebs.jl [TEST 23] PASS community/resilience.jl [TEST 24] PASS community/spectralradius.jl [TEST 25] PASS betadiversity/operations.jl [TEST 26] PASS betadiversity/partitions.jl [TEST 27] PASS modularity/utilities.jl [TEST 28] PASS modularity/starters.jl [TEST 29] PASS modularity/labelpropagation.jl [TEST 30] PASS modularity/brim.jl [TEST 31] PASS modularity/roles.jl [TEST 32] PASS information/entropy.jl [TEST 33] PASS information/otsin.jl Testing EcologicalNetworks tests passed Testing completed after 314.76s PkgEval succeeded after 375.94s