Package evaluation of EcoBase on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T07:50:54.496 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 12.18s ################################################################################ # Installation # Installing EcoBase... Resolving package versions... Installed RecipesBase ───── v1.3.4 Installed EcoBase ───────── v0.1.7 Installed Preferences ───── v1.4.3 Installed PrecompileTools ─ v1.2.1 Updating `~/.julia/environments/v1.11/Project.toml` [a58aae7d] + EcoBase v0.1.7 Updating `~/.julia/environments/v1.11/Manifest.toml` [a58aae7d] + EcoBase v0.1.7 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [3cdcf5f2] + RecipesBase v1.3.4 [ade2ca70] + Dates v1.11.0 [de0858da] + Printf v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.52s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 3195.0 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 23 already precompiled. Precompiling package dependencies... Precompilation completed after 385.09s ################################################################################ # Testing # Testing EcoBase Status `/tmp/jl_5tmZ1t/Project.toml` [d3d5718d] Diversity v0.5.15 [a58aae7d] EcoBase v0.1.7 [d7ba0133] Git v1.3.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.1.5 [348f2d5d] SpatialEcology v0.9.16 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5tmZ1t/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [d1d4a3ce] BitFlags v0.1.9 [00ebfdb7] CSTParser v3.4.3 ⌅ [8be319e6] Chain v0.5.0 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [1313f7d8] DataFramesMeta v0.14.1 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [d3d5718d] Diversity v0.5.15 [ffbed154] DocStringExtensions v0.9.4 [a58aae7d] EcoBase v0.1.7 [460bff9d] ExceptionUnwrapping v0.1.11 [d7ba0133] Git v1.3.1 [c27321d9] Glob v1.3.1 [cd3eb016] HTTP v1.10.15 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [58378933] ResearchSoftwareMetadata v0.1.5 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [348f2d5d] SpatialEcology v0.9.16 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [ddb6d928] YAML v0.4.13 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.49.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.0.16+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Potentially missing tests: - DataTypes.jl - EcoBase.jl - PlotRecipes.jl [ Info: Running tests for files: = Interface.jl [ Info: Running tests... * Testing Interface.jl ... Test Summary: | Pass Total Time EcoBase.jl | 23 23 44.9s [ Info: Crosswalk and clean testing: = JuliaFormatter = ResearchSoftwareMetadata * Verifying JuliaFormatter.jl ... fatal: not a git repository (or any parent up to mount point /home) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). JuliaFormatter: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/9bfc066f45d9299c72b5f6928c8618c066904c83/bin/git rev-parse --show-toplevel`,["PYTHON=", "PATH=/home/pkgeval/.julia/artifacts/96bc7b9ddb319d1a051535c85184aa2bf42dbd8b/bin:/home/pkgeval/.julia/artifacts/8be4b2d49ed77db4f9607e5f8a7b09cc105be2ee/bin:/home/pkgeval/.julia/artifacts/9bfc066f45d9299c72b5f6928c8618c066904c83/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/9bfc066f45d9299c72b5f6928c8618c066904c83/libexec/git-core", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/96bc7b9ddb319d1a051535c85184aa2bf42dbd8b/lib:/home/pkgeval/.julia/artifacts/8be4b2d49ed77db4f9607e5f8a7b09cc105be2ee/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=@:/tmp/jl_5tmZ1t", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/9bfc066f45d9299c72b5f6928c8618c066904c83/share/git-core/templates", "PKGEVAL=true", "GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "JULIA_PKG_PRECOMPILE_AUTO=0", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:482 [3] read @ ./process.jl:491 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:1136 [5] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:33 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [7] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:33 [8] include(fname::String) @ Main ./sysimg.jl:38 [9] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:110 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1793 [inlined] [11] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:107 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [13] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:102 [14] include(fname::String) @ Main ./sysimg.jl:38 [15] top-level scope @ none:6 [16] eval @ ./boot.jl:430 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [18] _start() @ Base ./client.jl:531 * Verifying ResearchSoftwareMetadata.jl ... fatal: not a git repository (or any parent up to mount point /home) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). RSMD: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/9bfc066f45d9299c72b5f6928c8618c066904c83/bin/git rev-parse --show-toplevel`,["PYTHON=", "PATH=/home/pkgeval/.julia/artifacts/96bc7b9ddb319d1a051535c85184aa2bf42dbd8b/bin:/home/pkgeval/.julia/artifacts/8be4b2d49ed77db4f9607e5f8a7b09cc105be2ee/bin:/home/pkgeval/.julia/artifacts/9bfc066f45d9299c72b5f6928c8618c066904c83/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/9bfc066f45d9299c72b5f6928c8618c066904c83/libexec/git-core", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/96bc7b9ddb319d1a051535c85184aa2bf42dbd8b/lib:/home/pkgeval/.julia/artifacts/8be4b2d49ed77db4f9607e5f8a7b09cc105be2ee/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=@:/tmp/jl_5tmZ1t", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/9bfc066f45d9299c72b5f6928c8618c066904c83/share/git-core/templates", "PKGEVAL=true", "GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "JULIA_PKG_PRECOMPILE_AUTO=0", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:482 [3] read @ ./process.jl:491 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:1136 [5] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:33 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [7] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:33 [8] include(fname::String) @ Main ./sysimg.jl:38 [9] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:110 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1793 [inlined] [11] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:107 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [13] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:102 [14] include(fname::String) @ Main ./sysimg.jl:38 [15] top-level scope @ none:6 [16] eval @ ./boot.jl:430 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [18] _start() @ Base ./client.jl:531 Test Summary: | Error Total Time test set | 2 2 10.3s c = JuliaFormatter | 1 1 7.0s JuliaFormatter | 1 1 5.1s c = ResearchSoftwareMetadata | 1 1 3.3s RSMD | 1 1 0.3s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/runtests.jl:91 Testing failed after 72.66s ERROR: LoadError: Package EcoBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 491.19s: package tests unexpectedly errored