Package evaluation of DynamicHMC on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T17:02:06.923 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.2s ################################################################################ # Installation # Installing DynamicHMC... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [bbc10e6e] + DynamicHMC v3.5.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [dce04be8] + ArgCheck v2.5.0 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [ffbed154] + DocStringExtensions v0.9.4 [bbc10e6e] + DynamicHMC v3.5.0 [1a297f60] + FillArrays v1.13.0 ⌅ [46192b85] + GPUArraysCore v0.1.6 [92d709cd] + IrrationalConstants v0.2.4 [1fad7336] + LazyStack v0.1.3 [6fdf6af0] + LogDensityProblems v2.1.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [65ce6f38] + PackageExtensionCompat v1.0.2 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [5e0ebb24] + Strided v2.3.0 [4db3bf67] + StridedViews v0.4.1 [02d47bb6] + TensorCast v0.4.8 [24ddb15e] + TransmuteDims v0.1.16 [9d95972d] + TupleTools v1.6.0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 22.29s ################################################################################ # Testing # Testing DynamicHMC Status `/tmp/jl_dCRHYB/Project.toml` [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.5.0 [ffbed154] DocStringExtensions v0.9.4 [bbc10e6e] DynamicHMC v3.5.0 [f6369f11] ForwardDiff v1.0.1 [09f84164] HypothesisTests v0.11.5 ⌅ [c3a54625] JET v0.9.19 [6fdf6af0] LogDensityProblems v2.1.2 [feb245ec] LogDensityTestSuite v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [be115224] MCMCDiagnosticTools v0.3.14 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [84d833dd] TransformVariables v0.8.16 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_dCRHYB/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.5.0 [d360d2e6] ChainRulesCore v1.25.1 [da1fd8a2] CodeTracking v1.3.9 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [bbc10e6e] DynamicHMC v3.5.0 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v1.0.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.9.19 [692b3bcd] JLLWrappers v1.7.0 [aa1ae85d] JuliaInterpreter v0.9.42 ⌅ [70703baa] JuliaSyntax v0.4.10 [1fad7336] LazyStack v0.1.3 [6fdf6af0] LogDensityProblems v2.1.2 [feb245ec] LogDensityTestSuite v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [be115224] MCMCDiagnosticTools v0.3.14 [e80e1ace] MLJModelInterface v1.11.0 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [65ce6f38] PackageExtensionCompat v1.0.2 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [30f210dd] ScientificTypesBase v3.0.0 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [64bff920] StatisticalTraits v3.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [5e0ebb24] Strided v2.3.0 [4db3bf67] StridedViews v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [02d47bb6] TensorCast v0.4.8 [84d833dd] TransformVariables v0.8.16 [24ddb15e] TransmuteDims v0.1.16 [9d95972d] TupleTools v1.6.0 [3a884ed6] UnPack v1.0.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling HypothesisTests... 6242.8 ms ✓ HypothesisTests 1 dependency successfully precompiled in 9 seconds. 60 already precompiled. Precompiling RootsForwardDiffExt... 1688.8 ms ✓ Roots → RootsForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 31 already precompiled. Precompiling TransformVariables... 3999.9 ms ✓ TransformVariables 1 dependency successfully precompiled in 4 seconds. 24 already precompiled. Precompiling InverseFunctionsExt... 2211.2 ms ✓ TransformVariables → InverseFunctionsExt 1 dependency successfully precompiled in 3 seconds. 28 already precompiled. Precompiling LogDensityTestSuite... 4836.5 ms ✓ MCMCDiagnosticTools 5578.6 ms ✓ LogDensityTestSuite 2 dependencies successfully precompiled in 12 seconds. 60 already precompiled. Test Summary: | Pass Total Time simulated meancov | 2 2 17.2s Test Summary: | Pass Total Time directions | 2 2 0.1s Test Summary: | Pass Total Time dummy adjacent tree full | 17 17 2.0s Test Summary: | Pass Total Time dummy adjacent tree turning | 15 15 0.7s Test Summary: | Pass Total Time dummy adjacent tree divergent | 13 13 0.9s Test Summary: | Pass Total Time dummy adjacent tree full backward | 29 29 0.3s Test Summary: | Pass Total Time dummy sampled tree | 27 27 0.3s Test Summary: | Pass Total Time transition calculations consistency check | 190527 190527 0.2s Test Summary: | Pass Total Time detailed balance | 1813168 1813168 1.7s Test Summary: | Pass Total Time Gaussian KE full | 400 400 23.6s Test Summary: | Pass Total Time Gaussian KE diagonal | 400 400 11.5s Test Summary: | Pass Total Time phasepoint internal consistency | 23 23 9.6s Test Summary: | Pass Total Time leapfrog calculation | 205 205 3.0s Test Summary: | Pass Total Time leapfrog Hamiltonian invariance | 1000 1000 0.5s Test Summary: | Pass Total Time leapfrog back and forth | 2200 2200 0.5s Test Summary: | Pass Total Time PhasePoint building blocks and infinite values | 9 9 1.2s Test Summary: | Pass Total Time Hamiltonian and KE printing | 3 3 0.7s Test Summary: | Pass Total Time unit normal simple HMC | 2 2 2.1s Test Summary: | Pass Total Time random booleans | 12 12 0.5s Test Summary: | Pass Total Time low-level turn statistics | 3 3 1.0s Test Summary: | Pass Total Time low-level visited statistics | 3 3 0.3s Test Summary: | Pass Total Time unconditional divergence | 4 4 1.5s Test Summary: | Pass Total Time normal NUTS HMC transition mean and cov | 20 20 4.4s Test Summary: | Pass Total Time stepsize general rootfinding | 7 7 0.3s Test Summary: | Pass Total Time dual averaging far | 4 4 0.0s Test Summary: | Pass Total Time dual averaging close | 1 1 0.0s Test Summary: | Pass Total Time dual averaging far and noisy | 1 1 0.0s Test Summary: | Pass Total Time fixed stepsize sanity checks | 3 3 0.0s Test Summary: | Pass Total Time find reasonable stepsize - random H, z | 100 100 0.0s Test Summary: | Pass Total Time error for non-finite initial density | 1 1 0.0s Test Summary: | Pass Total Time printing | 2 2 0.7s Test Summary: | Pass Total Time mcmc | 11 11 13.7s Test Summary: | Pass Total Time robust U-turn tests | 1 1 14.5s Test Summary: | Pass Total Time posterior accessors sanity checks | 2 2 1.5s Test Summary: | Pass Total Time summarize tree statistics | 15 15 5.2s Test Summary: | Pass Total Time log acceptance ratios | 2 2 1.4s Test Summary: | Pass Total Time leapfrog trajectory | 3 3 2.9s Test Summary: | Pass Total Time NUTS tests with random normal | 80 80 1m05.2s Test Summary: | Pass Total Time NUTS tests with specific normal distributions | 40 40 18.5s INFO while testing: mixture of two normals, dimension 3 ALERT some EBFMI = [0.565, 0.639, 0.526, 0.497, 0.621] > 0.5 Test Summary: | Pass Total Time NUTS tests with mixtures | 6 6 7.2s Test Summary: | Pass Total Time NUTS tests with heavier tails and skewness | 16 16 28.0s Precompiling JET... 10864.3 ms ✓ JET 1 dependency successfully precompiled in 12 seconds. 33 already precompiled. 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top-level definitions (162/220) [toplevel-info] analyzing from top-level definitions (163/220) [toplevel-info] analyzing from top-level definitions (164/220) [toplevel-info] analyzing from top-level definitions (165/220) [toplevel-info] analyzing from top-level definitions (166/220) [toplevel-info] analyzing from top-level definitions (167/220) [toplevel-info] analyzing from top-level definitions (168/220) [toplevel-info] analyzing from top-level definitions (169/220) [toplevel-info] analyzing from top-level definitions (170/220) [toplevel-info] analyzing from top-level definitions (171/220) [toplevel-info] analyzing from top-level definitions (172/220) [toplevel-info] analyzing from top-level definitions (173/220) [toplevel-info] analyzing from top-level definitions (174/220) [toplevel-info] analyzing from top-level definitions (175/220) [toplevel-info] analyzing from top-level definitions (176/220) [toplevel-info] analyzing from top-level definitions (177/220) [toplevel-info] analyzing from top-level definitions (178/220) [toplevel-info] analyzing from top-level definitions (179/220) [toplevel-info] analyzing from top-level definitions (180/220) [toplevel-info] analyzing from top-level definitions (181/220) [toplevel-info] analyzing from top-level definitions (182/220) [toplevel-info] analyzing from top-level definitions (183/220) [toplevel-info] analyzing from top-level definitions (184/220) [toplevel-info] analyzing from top-level definitions (185/220) [toplevel-info] analyzing from top-level definitions (186/220) [toplevel-info] analyzing from top-level definitions (187/220) [toplevel-info] analyzing from top-level definitions (188/220) [toplevel-info] analyzing from top-level definitions (189/220) [toplevel-info] analyzing from top-level definitions (190/220) [toplevel-info] analyzing from top-level definitions (191/220) [toplevel-info] analyzing from top-level definitions (192/220) [toplevel-info] analyzing from top-level definitions (193/220) [toplevel-info] analyzing from top-level definitions (194/220) [toplevel-info] analyzing from top-level definitions (195/220) [toplevel-info] analyzing from top-level definitions (196/220) [toplevel-info] analyzing from top-level definitions (197/220) [toplevel-info] analyzing from top-level definitions (198/220) [toplevel-info] analyzing from top-level definitions (199/220) [toplevel-info] analyzing from top-level definitions (200/220) [toplevel-info] analyzing from top-level definitions (201/220) [toplevel-info] analyzing from top-level definitions (202/220) [toplevel-info] analyzing from top-level definitions (203/220) [toplevel-info] analyzing from top-level definitions (204/220) [toplevel-info] analyzing from top-level definitions (205/220) [toplevel-info] analyzing from top-level definitions (206/220) [toplevel-info] analyzing from top-level definitions (207/220) [toplevel-info] analyzing from top-level definitions (208/220) [toplevel-info] analyzing from top-level definitions (209/220) [toplevel-info] analyzing from top-level definitions (210/220) [toplevel-info] analyzing from top-level definitions (211/220) [toplevel-info] analyzing from top-level definitions (212/220) [toplevel-info] analyzing from top-level definitions (213/220) [toplevel-info] analyzing from top-level definitions (214/220) [toplevel-info] analyzing from top-level definitions (215/220) [toplevel-info] analyzing from top-level definitions (216/220) [toplevel-info] analyzing from top-level definitions (217/220) [toplevel-info] analyzing from top-level definitions (218/220) [toplevel-info] analyzing from top-level definitions (219/220) [toplevel-info] analyzing from top-level definitions (220/220) [toplevel-info] analyzed 220 top-level definitions (took 28.545 sec) Test Summary: | Pass Total Time static analysis with JET.jl | 1 1 3m26.9s Test Summary: | Pass Total Time Aqua | 11 11 49.5s Testing DynamicHMC tests passed Testing completed after 574.74s PkgEval succeeded after 622.63s