Package evaluation of Distances on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T07:40:26.248 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.38s ################################################################################ # Installation # Installing Distances... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [b4f34e82] + Distances v0.10.12 Updating `~/.julia/environments/v1.11/Manifest.toml` [b4f34e82] + Distances v0.10.12 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [56f22d72] + Artifacts v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Installation completed after 1.85s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 14.67s ################################################################################ # Testing # Testing Distances Status `/tmp/jl_CSojRv/Project.toml` [d360d2e6] ChainRulesCore v1.25.1 [cdddcdb0] ChainRulesTestUtils v1.13.0 [b4f34e82] Distances v0.10.12 [6fe1bfb0] OffsetArrays v1.16.0 [860ef19b] StableRNGs v1.0.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [1986cc42] Unitful v1.22.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_CSojRv/Manifest.toml` [d360d2e6] ChainRulesCore v1.25.1 [cdddcdb0] ChainRulesTestUtils v1.13.0 [34da2185] Compat v4.16.0 [b4f34e82] Distances v0.10.12 [26cc04aa] FiniteDifferences v0.12.32 [6fe1bfb0] OffsetArrays v1.16.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [708f8203] Richardson v1.4.2 [860ef19b] StableRNGs v1.0.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [fd094767] Suppressor v0.2.8 [1986cc42] Unitful v1.22.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time result_type | 16 16 1.1s Test Summary: | Pass Total Time PreMetric, SemiMetric, Metric on Float64 | 489 489 1m45.8s Test Summary: | Pass Total Time PreMetric, SemiMetric, Metric on F64 | 489 489 1m35.4s Test Summary: | Pass Total Time individual metrics | 711 711 1m52.1s Test Summary: | Pass Total Time NaN behavior | 6 6 0.6s Test Summary: | Pass Total Time empty vector | 138 138 3.3s Test Summary: | Pass Total Time DimensionMismatch throwing | 27 27 3.7s Test Summary: | Pass Total Time Different input types | 52 52 17.2s ┌ Warning: matrix is not symmetric/Hermitian └ @ Distances ~/.julia/packages/Distances/mlz7p/src/mahalanobis.jl:57 ┌ Warning: matrix is not symmetric/Hermitian └ @ Distances ~/.julia/packages/Distances/mlz7p/src/mahalanobis.jl:26 ┌ Warning: matrix is not symmetric/Hermitian └ @ Distances ~/.julia/packages/Distances/mlz7p/src/mahalanobis.jl:57 ┌ Warning: matrix is not symmetric/Hermitian └ @ Distances ~/.julia/packages/Distances/mlz7p/src/mahalanobis.jl:26 ┌ Warning: matrix is not symmetric/Hermitian └ @ Distances ~/.julia/packages/Distances/mlz7p/src/mahalanobis.jl:57 ┌ Warning: matrix is not symmetric/Hermitian └ @ Distances ~/.julia/packages/Distances/mlz7p/src/mahalanobis.jl:26 Test Summary: | Pass Total Time mahalanobis | 48 48 20.1s Test Summary: | Pass Total Time haversine | 52 52 6.1s Test Summary: | Pass Total Time spherical angle | 7 7 0.4s Test Summary: | Pass Total Time bhattacharyya / hellinger | 78 78 9.1s Test Summary: | Pass Total Time column-wise metrics on Float64 | 400 400 2m09.9s Test Summary: | Pass Total Time column-wise metrics on F64 | 400 400 1m59.4s Test Summary: | Pass Total Time pairwise metrics on Float64 | 2880 2880 6m42.7s Test Summary: | Pass Total Time pairwise metrics on F64 | 2880 2880 6m15.9s Test Summary: | Pass Total Time pairwise metrics on complex arrays | 192 192 48.0s Test Summary: | Pass Total Time scalar pairwise metrics on Float64 | 775 775 1m57.2s Test Summary: | Pass Total Time scalar pairwise metrics on F64 | 775 775 1m42.0s Test Summary: | Pass Total Time Euclidean precision | 8 8 0.0s Test Summary: | Pass Total Time non-negativity | 12 12 0.8s Test Summary: | Pass Total Time Bregman Divergence | 8 8 8.3s Test Summary: | Pass Total Time Unitful data | 47 47 27.0s Test Summary: | Pass Total Time SparseVector, nnz(a) != nnz(b) | 18 18 0.0s ┌ Warning: inference tests have been disabled └ @ ChainRulesTestUtils ~/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/global_config.jl:13 Precompiling StaticArraysStatisticsExt... 1486.0 ms ✓ StaticArrays → StaticArraysStatisticsExt 1 dependency successfully precompiled in 2 seconds. 9 already precompiled. ┌ Warning: implicit `dims=2` argument now has to be passed explicitly to specify that distances between columns should be computed │ caller = ip:0x0 └ @ Core :-1 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 11 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm6object10SectionRef14containsSymbolENS0_9SymbolRefE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) get_function_name_and_base at /source/src/debuginfo.cpp:749 [inlined] jl_dylib_DI_for_fptr at /source/src/debuginfo.cpp:1147 jl_getDylibFunctionInfo at /source/src/debuginfo.cpp:1179 [inlined] jl_getFunctionInfo_impl at /source/src/debuginfo.cpp:1274 ijl_lookup_code_address at /source/src/stackwalk.c:593 lookup at ./stacktraces.jl:108 firstcaller at ./deprecated.jl:185 [inlined] firstcaller at ./deprecated.jl:180 [inlined] macro expansion at ./deprecated.jl:160 [inlined] macro expansion at ./logging/logging.jl:399 [inlined] _depwarn at ./deprecated.jl:155 unknown function (ip: 0x7f39cfac22e0) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 #invokelatest#2 at ./essentials.jl:1055 [inlined] invokelatest at ./essentials.jl:1052 [inlined] #depwarn#1188 at ./deprecated.jl:146 [inlined] depwarn at ./deprecated.jl:141 [inlined] deprecated_dims at /home/pkgeval/.julia/packages/Distances/mlz7p/src/generic.jl:253 [inlined] #pairwise#4 at /home/pkgeval/.julia/packages/Distances/mlz7p/src/generic.jl:349 pairwise at /home/pkgeval/.julia/packages/Distances/mlz7p/src/generic.jl:347 unknown function (ip: 0x7f39c8bdcd76) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 call at /home/pkgeval/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/testers.jl:200 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 fnew at /home/pkgeval/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/finite_difference_calls.jl:86 unknown function (ip: 0x7f39c8befd72) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_invoke at /source/src/gf.c:2955 #92 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:77 #75 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:20 #11 at ./broadcast.jl:353 [inlined] macro expansion at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:135 [inlined] __broadcast at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:123 [inlined] _broadcast at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:119 [inlined] copy at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:60 [inlined] materialize at ./broadcast.jl:872 [inlined] _eval_function at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:249 _estimate_magnitudes at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:378 estimate_step at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:365 AdaptedFiniteDifferenceMethod at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:193 #74 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:16 [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:849 collect_to_with_first! at ./array.jl:827 unknown function (ip: 0x7f39c8bf0945) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _collect at ./array.jl:821 collect_similar at ./array.jl:720 [inlined] map at ./abstractarray.jl:3371 [inlined] #jacobian#73 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:15 unknown function (ip: 0x7f39c8bef26e) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jacobian at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:9 _j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:84 j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:77 unknown function (ip: 0x7f39c8bed39c) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 _make_j′vp_call at /home/pkgeval/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/finite_difference_calls.jl:51 macro expansion at /home/pkgeval/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/testers.jl:233 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] #test_rrule#63 at /home/pkgeval/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/testers.jl:205 test_rrule at /home/pkgeval/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/testers.jl:181 [inlined] #test_rrule#62 at /home/pkgeval/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/testers.jl:178 [inlined] test_rrule at /home/pkgeval/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/testers.jl:177 [inlined] macro expansion at /home/pkgeval/.julia/packages/Distances/mlz7p/test/chainrules.jl:28 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.11/Test/src/Test.jl:1793 [inlined] macro expansion at /home/pkgeval/.julia/packages/Distances/mlz7p/test/chainrules.jl:15 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] top-level scope at /home/pkgeval/.julia/packages/Distances/mlz7p/test/chainrules.jl:6 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_invoke at /source/src/gf.c:2955 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7f39e705b082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7f39e705b082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7f39e80db249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 task_done_hook at ./task.jl:694 jfptr_task_done_hook_66630.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] jl_finish_task at /source/src/task.c:319 start_task at /source/src/task.c:1213 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007e3269726270 Total snapshots: 324. Utilization: 0% ╎324 @Base/task.jl:694; task_done_hook(t::Task) ╎ 324 @Base/task.jl:1021; wait() 323╎ 324 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T… [11] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Distances/mlz7p/test/chainrules.jl:5 PkgEval terminated after 2720.55s: test duration exceeded the time limit