Package evaluation of DeconvOptim on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T18:28:18.453 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.9s ################################################################################ # Installation # Installing DeconvOptim... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [03e7cd2f] + DeconvOptim v0.7.3 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [fa961155] + CEnum v0.5.0 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [03e7cd2f] + DeconvOptim v0.7.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.50 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [7a1cc6ca] + FFTW v1.8.1 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.0.1 [0c68f7d7] + GPUArrays v11.2.2 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.14 [a09fc81d] + ImageCore v0.10.5 [a98d9a8b] + Interpolations v0.15.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.34 [929cbde3] + LLVM v9.2.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [dbb5928d] + MappedArrays v0.4.2 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [81d43f40] + Noise v0.3.3 [6fe1bfb0] + OffsetArrays v1.16.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.4 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.0 [cae243ae] + StackViews v0.1.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [bc48ee85] + Tullio v0.3.8 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [efce3f68] + WoodburyMatrices v1.0.0 ⌅ [e88e6eb3] + Zygote v0.6.76 [700de1a5] + ZygoteRules v0.2.7 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [dad2f222] + LLVMExtra_jll v0.0.35+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.52s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 203.33s ################################################################################ # Testing # Testing DeconvOptim Status `/tmp/jl_SFYANv/Project.toml` [d360d2e6] ChainRulesCore v1.25.1 [03e7cd2f] DeconvOptim v0.7.3 [7a1cc6ca] FFTW v1.8.1 [1a297f60] FillArrays v1.13.0 [6218d12a] ImageMagick v1.4.1 [a98d9a8b] Interpolations v0.15.1 [d3d80556] LineSearches v7.3.0 [81d43f40] Noise v0.3.3 [429524aa] Optim v1.12.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [ae029012] Requires v1.3.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [5e47fb64] TestImages v1.9.0 [bc48ee85] Tullio v0.3.8 ⌅ [e88e6eb3] Zygote v0.6.76 [37e2e46d] LinearAlgebra v1.11.0 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_SFYANv/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [03e7cd2f] DeconvOptim v0.7.3 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.50 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [7a1cc6ca] FFTW v1.8.1 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.14 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [6218d12a] ImageMagick v1.4.1 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.10 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b835a17e] JpegTurbo v0.1.6 [63c18a36] KernelAbstractions v0.9.34 [929cbde3] LLVM v9.2.0 [8cdb02fc] LazyModules v0.3.1 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [dbb5928d] MappedArrays v0.4.2 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [f09324ee] Netpbm v1.1.1 [81d43f40] Noise v0.3.3 [6fe1bfb0] OffsetArrays v1.16.0 [52e1d378] OpenEXR v0.3.3 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.0 [f57f5aa1] PNGFiles v0.4.4 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [eebad327] PkgVersion v0.3.3 [e409e4f3] PoissonRandom v0.4.4 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [fdea26ae] SIMD v3.7.1 [7e506255] ScopedValues v1.3.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.4 [45858cf5] Sixel v0.1.3 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [cae243ae] StackViews v0.1.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [88034a9c] StringDistances v0.11.3 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [5e47fb64] TestImages v1.9.0 [731e570b] TiffImages v0.11.3 [bc48ee85] Tullio v0.3.8 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.0.0 ⌅ [e88e6eb3] Zygote v0.6.76 [700de1a5] ZygoteRules v0.2.7 [f5851436] FFTW_jll v3.3.11+0 [61579ee1] Ghostscript_jll v9.55.0+4 [59f7168a] Giflib_jll v5.2.3+0 [c73af94c] ImageMagick_jll v7.1.1+1 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [aacddb02] JpegTurbo_jll v3.1.1+0 ⌅ [88015f11] LERC_jll v3.0.0+1 [dad2f222] LLVMExtra_jll v0.0.35+0 [d4300ac3] Libgcrypt_jll v1.11.1+0 [7e76a0d4] Libglvnd_jll v1.7.0+0 [7add5ba3] Libgpg_error_jll v1.51.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [89763e89] Libtiff_jll v4.4.0+0 ⌃ [d3a379c0] LittleCMS_jll v2.12.0+0 [856f044c] MKL_jll v2025.0.1+1 [18a262bb] OpenEXR_jll v3.2.4+0 ⌃ [643b3616] OpenJpeg_jll v2.4.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [02c8fc9c] XML2_jll v2.13.6+1 [aed1982a] XSLT_jll v1.1.43+0 [4f6342f7] Xorg_libX11_jll v1.8.6+3 [0c0b7dd1] Xorg_libXau_jll v1.0.12+0 [a3789734] Xorg_libXdmcp_jll v1.1.5+0 [1082639a] Xorg_libXext_jll v1.3.6+3 [14d82f49] Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] Xorg_libxcb_jll v1.17.0+3 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [b53b4c65] libpng_jll v1.6.47+0 [075b6546] libsixel_jll v1.10.5+0 ⌃ [c5f90fcd] libwebp_jll v1.4.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling Noise... 3160.2 ms ✓ Noise 1 dependency successfully precompiled in 4 seconds. 22 already precompiled. Precompiling ZygoteColorsExt... 1891.1 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 13111.4 ms ✓ GPUArrays 5170.3 ms ✓ Zygote → ZygoteColorsExt 3 dependencies successfully precompiled in 22 seconds. 104 already precompiled. Precompiling TestImages... 121556.8 ms ✓ TiffImages 10249.7 ms ✓ JpegTurbo 9310.3 ms ✓ Sixel 4099.8 ms ✓ OpenEXR 6158.4 ms ✓ ImageAxes 11266.5 ms ✓ ImageMagick 7424.1 ms ✓ WebP 3564.5 ms ✓ ImageMetadata 6275.3 ms ✓ Netpbm 5973.0 ms ✓ TestImages 10 dependencies successfully precompiled in 187 seconds. 103 already precompiled. Precompiling ZygoteDistancesExt... 7020.0 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 9 seconds. 107 already precompiled. Test Summary: | Pass Total Time Utils | 26 26 1m05.3s more_options = Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}() Test Summary: | Pass Total Time Analysis tools | 6 6 2m25.5s Test Summary: | Pass Total Time Test eigvals | 2 2 3m49.0s Test Summary: | Pass Total Time Schatten norm consistent | 3 3 7.4s Test Summary: | Pass Total Time Convolution methods | 50 50 3m23.8s Test Summary: | Pass Total Time Non_negative | 3 3 3.6s Test Summary: | Pass Total Time Map_0_1 | 3 3 2.0s Test Summary: | Pass Total Time Pow4_positive | 3 3 1.5s Test Summary: | Pass Total Time Piecewise_positive | 5 5 21.0s Test Summary: | Pass Total Time Abs_positive | 3 3 1.3s Test Summary: | Pass Total Time Forward Models: Convolution | 2 2 3.4s Test Summary: | Pass Total Time Poisson loss | 3 3 5.4s Test Summary: | Pass Total Time Gaussian Loss | 3 3 1.6s Test Summary: | Pass Total Time Scaled Gauss | 3 3 5.4s Test Summary: | Pass Total Time Anscombe Loss | 3 3 10.4s Test Summary: | Pass Total Time generate indices | 1 1 0.0s Test Summary: | Pass Total Time generate_laplace | 2 2 0.3s Test Summary: | Pass Total Time Tikhonov | 3 3 2.2s Test Summary: | Pass Total Time Good's roughness | 2 2 0.8s Test Summary: | Pass Total Time TV | 4 4 4.0s Test Summary: | Pass Total Time Testing Main deconvolution code | 8 8 8m17.5s Test Summary: | Pass Total Time Compare optimization with iterative lucy richardson scheme | 3 3 2m48.5s Testing DeconvOptim tests passed Testing completed after 1626.44s PkgEval succeeded after 1853.97s