Package evaluation of Decapodes on Julia 1.11.4 (a71dd056e0*) started at 2025-04-09T01:11:55.906 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.79s ################################################################################ # Installation # Installing Decapodes... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:676 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.21 Updating `~/.julia/environments/v1.11/Project.toml` [679ab3ea] + Decapodes v0.5.7 Updating `~/.julia/environments/v1.11/Manifest.toml` [227ef7b5] + ACSets v0.2.21 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [e2ed5e7c] + Bijections v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [aafaddc9] + CatIndices v0.2.2 [134e5e36] + Catlab v0.16.19 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [d3e213a1] + ColorSchemeTools v1.6.0 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [b1c52339] + CombinatorialSpaces v0.7.4 [861a8166] + Combinatorics v1.0.2 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.16.0 [b0b7db55] + ComponentArrays v0.15.26 [a81c6b42] + Compose v0.9.5 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.5.8 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 [9a962f9c] + DataAPI v1.16.0 [0c4ad18d] + DataMigrations v0.1.1 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [679ab3ea] + Decapodes v0.5.7 [6f00c28b] + DiagrammaticEquations v0.1.8 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [e30172f5] + Documenter v1.10.1 [7c1d4256] + DynamicPolynomials v0.6.1 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.5 [4f61f5a4] + FFTViews v0.3.2 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.0.1 [d9f16b24] + Functors v0.5.2 ⌅ [f0ffcf3b] + GATlab v0.1.5 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [5c1252a2] + GeometryBasics v0.5.7 [d7ba0133] + Git v1.3.1 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.12.1 [2c695a8d] + HistogramThresholding v0.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [b5f81e59] + IOCapture v0.2.5 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [cbc4b850] + ImageBinarization v0.3.1 [f332f351] + ImageContrastAdjustment v0.3.12 [a09fc81d] + ImageCore v0.10.5 [89d5987c] + ImageCorners v0.1.3 [51556ac3] + ImageDistances v0.2.17 [6a3955dd] + ImageFiltering v0.7.9 [82e4d734] + ImageIO v0.6.9 [6218d12a] + ImageMagick v1.4.1 [bc367c6b] + ImageMetadata v0.9.10 [787d08f9] + ImageMorphology v0.4.6 [2996bd0c] + ImageQualityIndexes v0.3.7 [80713f31] + ImageSegmentation v1.8.4 [4e3cecfd] + ImageShow v0.3.8 [02fcd773] + ImageTransformations v0.10.1 [916415d5] + Images v0.26.2 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [1d092043] + IntegralArrays v0.1.6 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [b835a17e] + JpegTurbo v0.1.6 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.34 [ba0b0d4f] + Krylov v0.9.10 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [5078a376] + LazyArrays v2.6.1 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.1 [98b081ad] + Literate v2.20.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [d0879d2d] + MarkdownAST v0.1.2 [442fdcdd] + Measures v0.3.2 [7269a6da] + MeshIO v0.5.3 ⌃ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [102ac46a] + MultivariatePolynomials v0.5.7 [d8a4904e] + MutableArithmetics v1.6.4 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + 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[b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.42s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:63 Precompiling package dependencies... Precompilation completed after 751.34s ################################################################################ # Testing # Testing Decapodes ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1920 Status `/tmp/jl_CluUCT/Project.toml` [227ef7b5] ACSets v0.2.21 [4c88cf16] Aqua v0.8.11 [052768ef] CUDA v5.7.2 [b1c52339] CombinatorialSpaces v0.7.4 [b0b7db55] ComponentArrays v0.15.26 [679ab3ea] Decapodes v0.5.7 [6f00c28b] DiagrammaticEquations v0.1.8 [31c24e10] Distributions v0.25.118 [5c1252a2] GeometryBasics v0.5.7 [682c06a0] JSON v0.21.4 [ba0b0d4f] Krylov v0.9.10 [d8e11817] MLStyle v0.4.17 [1dea7af3] OrdinaryDiffEq v6.93.0 [d236fae5] PreallocationTools v0.4.26 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.11.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_CluUCT/Manifest.toml` [227ef7b5] ACSets v0.2.21 [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [23cfdc9f] AlgebraicInterfaces v0.1.4 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [ab4f0b2a] BFloat16s v0.5.1 [e2ed5e7c] Bijections v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.1.3 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [052768ef] CUDA v5.7.2 [1af6417a] CUDA_Runtime_Discovery v0.3.5 [aafaddc9] CatIndices v0.2.2 [134e5e36] Catlab v0.16.19 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [d3e213a1] ColorSchemeTools v1.6.0 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [b1c52339] CombinatorialSpaces v0.7.4 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.16.0 [b0b7db55] ComponentArrays v0.15.26 [a81c6b42] Compose v0.9.5 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [150eb455] CoordinateTransformations v0.6.4 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [0c4ad18d] DataMigrations v0.1.1 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [679ab3ea] Decapodes v0.5.7 [6f00c28b] DiagrammaticEquations v0.1.8 [2b5f629d] DiffEqBase v6.167.2 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] 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SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: using deprecated binding Colors.RGB1 in ImageCore. , use XRGB instead. WARNING: using deprecated binding ImageCore.RGB1 in ImageAxes. , use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: using deprecated binding ImageCore.RGB1 in ImageBase. , use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: using deprecated binding ImageAxes.RGB1 in Images. , use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: Images.RGB1 is deprecated, use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. likely near none:8 WARNING: using deprecated binding Colors.RGB4 in ImageCore. , use RGBX instead. WARNING: using deprecated binding ImageCore.RGB4 in ImageAxes. , use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: using deprecated binding ImageCore.RGB4 in ImageBase. , use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: using deprecated binding ImageAxes.RGB4 in Images. , use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: Images.RGB4 is deprecated, use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. likely near none:8 WARNING: using deprecated binding ImageMorphology.morphogradient in Images. , use mgradient instead. WARNING: Images.morphogradient is deprecated, use ImageMorphology.mgradient instead. likely near none:8 WARNING: using deprecated binding ImageMorphology.morpholaplace in Images. , use mlaplacian instead. WARNING: Images.morpholaplace is deprecated, use ImageMorphology.mlaplacian instead. likely near none:8 WARNING: using deprecated binding ImageCore.permuteddimsview in ImageAxes. , use PermutedDimsArray instead. WARNING: using deprecated binding ImageCore.permuteddimsview in ImageBase. , use PermutedDimsArray instead. WARNING: using deprecated binding ImageAxes.permuteddimsview in Images. , use Base.PermutedDimsArrays.PermutedDimsArray{T, N, perm, iperm, AA} where AA<:(AbstractArray{T, N} where N where T) where iperm where perm where N where T instead. WARNING: Images.permuteddimsview is deprecated, use Base.PermutedDimsArrays.PermutedDimsArray{T, N, perm, iperm, AA} where AA<:(AbstractArray{T, N} where N where T) where iperm where perm where N where T instead. likely near none:8 WARNING: using deprecated binding Colors.RGB1 in ImageCore. , use XRGB instead. WARNING: using deprecated binding ImageCore.RGB1 in ImageAxes. , use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: using deprecated binding ImageCore.RGB1 in ImageBase. , use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: using deprecated binding ImageAxes.RGB1 in Images. , use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: Images.RGB1 is deprecated, use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. likely near /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/aqua.jl:4 WARNING: using deprecated binding Colors.RGB4 in ImageCore. , use RGBX instead. WARNING: using deprecated binding ImageCore.RGB4 in ImageAxes. , use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: using deprecated binding ImageCore.RGB4 in ImageBase. , use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: using deprecated binding ImageAxes.RGB4 in Images. , use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. WARNING: Images.RGB4 is deprecated, use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. likely near /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/aqua.jl:4 WARNING: using deprecated binding ImageMorphology.morphogradient in Images. , use mgradient instead. WARNING: Images.morphogradient is deprecated, use ImageMorphology.mgradient instead. likely near /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/aqua.jl:4 WARNING: using deprecated binding ImageMorphology.morpholaplace in Images. , use mlaplacian instead. WARNING: Images.morpholaplace is deprecated, use ImageMorphology.mlaplacian instead. likely near /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/aqua.jl:4 WARNING: using deprecated binding ImageCore.permuteddimsview in ImageAxes. , use PermutedDimsArray instead. WARNING: using deprecated binding ImageCore.permuteddimsview in ImageBase. , use PermutedDimsArray instead. WARNING: using deprecated binding ImageAxes.permuteddimsview in Images. , use Base.PermutedDimsArrays.PermutedDimsArray{T, N, perm, iperm, AA} where AA<:(AbstractArray{T, N} where N where T) where iperm where perm where N where T instead. WARNING: Images.permuteddimsview is deprecated, use Base.PermutedDimsArrays.PermutedDimsArray{T, N, perm, iperm, AA} where AA<:(AbstractArray{T, N} where N where T) where iperm where perm where N where T instead. likely near /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/aqua.jl:4 Test Summary: | Pass Total Time Code Quality (Aqua.jl) | 11 11 7m23.2s Precompiling Distributions... 3469.6 ms ✓ StatsFuns 9472.8 ms ✓ Distributions 2 dependencies successfully precompiled in 18 seconds. 44 already precompiled. Precompiling StatsFunsInverseFunctionsExt... 1816.9 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 1 dependency successfully precompiled in 2 seconds. 21 already precompiled. Precompiling StatsFunsChainRulesCoreExt... 4314.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1 dependency successfully precompiled in 5 seconds. 24 already precompiled. Precompiling DistributionsTestExt... 6188.3 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 10 seconds. 48 already precompiled. Precompiling DistributionsChainRulesCoreExt... 6323.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 1 dependency successfully precompiled in 10 seconds. 51 already precompiled. Precompiling OrdinaryDiffEq... 1287.5 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 4662.8 ms ✓ RecursiveArrayTools 4718.9 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 4467.4 ms ✓ FastGaussQuadrature 3472.3 ms ✓ VertexSafeGraphs 1872.3 ms ✓ FastPower → FastPowerForwardDiffExt 1974.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2360.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 1890.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 3398.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 25303.4 ms ✓ SciMLBase 7563.9 ms ✓ SparseDiffTools 2524.6 ms ✓ NLSolversBase 3125.3 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 7575.1 ms ✓ SciMLJacobianOperators 7855.4 ms ✓ DiffEqBase 5743.8 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 5158.5 ms ✓ LineSearches 26876.4 ms ✓ LinearSolve 10835.9 ms ✓ LineSearch 17453.3 ms ✓ NonlinearSolveBase 4481.0 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4724.7 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 4114.1 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 11125.7 ms ✓ OrdinaryDiffEqCore 4758.3 ms ✓ LinearSolve → LinearSolveEnzymeExt 9450.4 ms ✓ LinearSolve → LinearSolveSparseArraysExt 4119.4 ms ✓ LineSearch → LineSearchLineSearchesExt 3577.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4572.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 3533.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 4018.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 6195.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 3974.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 9565.8 ms ✓ BracketingNonlinearSolve 4196.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 34023.5 ms ✓ NonlinearSolveQuasiNewton 18752.8 ms ✓ NonlinearSolveSpectralMethods 52280.1 ms ✓ NonlinearSolveFirstOrder 3922.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 7020.8 ms ✓ OrdinaryDiffEqExplicitRK 8293.0 ms ✓ OrdinaryDiffEqHighOrderRK 8264.4 ms ✓ OrdinaryDiffEqStabilizedRK 7434.2 ms ✓ OrdinaryDiffEqSymplecticRK 10183.0 ms ✓ OrdinaryDiffEqSSPRK 10689.7 ms ✓ OrdinaryDiffEqLowOrderRK 6741.8 ms ✓ OrdinaryDiffEqFunctionMap 16596.9 ms ✓ OrdinaryDiffEqTsit5 77326.8 ms ✓ OrdinaryDiffEqVerner 8747.5 ms ✓ OrdinaryDiffEqPRK 7666.7 ms ✓ OrdinaryDiffEqRKN 7371.9 ms ✓ OrdinaryDiffEqFeagin 7202.3 ms ✓ OrdinaryDiffEqQPRK 10693.9 ms ✓ OrdinaryDiffEqLowStorageRK 14533.3 ms ✓ OrdinaryDiffEqDifferentiation 10633.4 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 5099.7 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 24442.4 ms ✓ SimpleNonlinearSolve 8316.6 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 6133.6 ms ✓ OrdinaryDiffEqNordsieck 6930.2 ms ✓ OrdinaryDiffEqLinear 14929.2 ms ✓ OrdinaryDiffEqExtrapolation 54024.1 ms ✓ OrdinaryDiffEqRosenbrock 5659.9 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 6316.4 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 36719.3 ms ✓ NonlinearSolve 14472.3 ms ✓ OrdinaryDiffEqNonlinearSolve 13793.7 ms ✓ OrdinaryDiffEqStabilizedIRK 17289.1 ms ✓ OrdinaryDiffEqSDIRK 13856.5 ms ✓ OrdinaryDiffEqIMEXMultistep 15106.1 ms ✓ OrdinaryDiffEqPDIRK 55135.5 ms ✓ OrdinaryDiffEqFIRK 17061.5 ms ✓ OrdinaryDiffEqExponentialRK 39658.4 ms ✓ OrdinaryDiffEqBDF 73554.9 ms ✓ OrdinaryDiffEqDefault 19025.2 ms ✓ OrdinaryDiffEq 76 dependencies successfully precompiled in 1017 seconds. 168 already precompiled. Precompiling ComponentArraysRecursiveArrayToolsExt... 1827.6 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 1 dependency successfully precompiled in 2 seconds. 47 already precompiled. Precompiling ComponentArraysSciMLBaseExt... 3115.6 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 1 dependency successfully precompiled in 4 seconds. 68 already precompiled. Precompiling SciMLBaseMLStyleExt... 3373.2 ms ✓ SciMLBase → SciMLBaseMLStyleExt 1 dependency successfully precompiled in 4 seconds. 56 already precompiled. Precompiling DiffEqBaseDistributionsExt... 8263.6 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 1 dependency successfully precompiled in 13 seconds. 124 already precompiled. Precompiling DiffEqBaseGeneralizedGeneratedExt... 4415.6 ms ✓ DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 1 dependency successfully precompiled in 6 seconds. 95 already precompiled. Precompiling LinearSolveKernelAbstractionsExt... 9387.0 ms ✓ LinearSolve → LinearSolveKernelAbstractionsExt 1 dependency successfully precompiled in 11 seconds. 115 already precompiled. Precompiling SparseMatrixColoringsColorsExt... 1689.1 ms ✓ SparseMatrixColorings → SparseMatrixColoringsColorsExt 1 dependency successfully precompiled in 2 seconds. 12 already precompiled. Precompiling EnzymeExt... 1921.1 ms ✓ KernelAbstractions → EnzymeExt 1 dependency successfully precompiled in 2 seconds. 22 already precompiled. Test Summary: | Pass Total Time ComponentArrays.jl Integration | 2 2 21m60.0s Test Summary: | Pass Total Time Simulation Core | 188 188 13.7s Test Summary: | Pass Total Time Open Operators | 18 18 9.6s WARNING: Method definition generate(Any, Any) in module Main at /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/componentarrays.jl:25 overwritten at /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/simulation.jl:54. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 198 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm16GenericScheduler10initializeEPNS_13ScheduleDAGMIE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm17ScheduleDAGMILive8scheduleEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_120MachineSchedulerBase15scheduleRegionsERN4llvm17ScheduleDAGInstrsEb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_116MachineScheduler20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) operator() at /source/src/jitlayers.cpp:1388 _ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2536 [inlined] jl_compile_method_internal at /source/src/gf.c:2423 _jl_invoke at /source/src/gf.c:2940 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7f3eb1737122) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7f3ec9aff082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7f3ecab41249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x77b008b820d2) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2142 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2082 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1931 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1789 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1898 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x77b008b764dd) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1845 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1837 unknown function (ip: 0x77b008b6aaaa) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2063 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x77b008b6a7ad) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x77b008b6a19d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x77b008b66646) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:557 jfptr_include_46977.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x77b009d96249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000077affc800010 Total snapshots: 13. Utilization: 0% ╎13 @Base/client.jl:531; _start() ╎ 13 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 13 @Base/Base.jl:557; include(mod::Module, _path::String) ╎ 13 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path:… ╎ 13 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod:… ╎ 13 @Base/boot.jl:430; eval ╎ ╎ 13 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 13 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 13 @Pkg/src/API.jl:147; test ╎ ╎ 13 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 13 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 13 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 13 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 13 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 13 …src/Operations.jl:2007; test ╎ ╎ ╎ 13 …src/Operations.jl:2063; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 13 …rc/Operations.jl:1837; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 13 …rc/Operations.jl:1845; #sandbox#115 ╎ ╎ ╎ ╎ 13 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 13 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 13 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 13 …/Operations.jl:1898; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 13 …/Operations.jl:1789; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 13 …Operations.jl:1931; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 13 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 13 …Operations.jl:2082; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 13 …perations.jl:2142; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 13 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 13 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 13 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 13 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 13 …ase/task.jl:1021; wait() 12╎ ╎ ╎ ╎ ╎ ╎ ╎ 13 …ase/task.jl:1012; poptask(W::Base.Intrus… Gensim Transformations: Error During Test┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 at Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007f3ebd400010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:531; _start() ╎ 1 @Base/client.jl:296; exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:430; eval ╎ 1 @Base/sysimg.jl:38; include(fname::String) ╎ 1 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path::… ╎ 1 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod::… ╎ ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 @Base/sysimg.jl:38; include(fname::String) ╎ ╎ 1 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 1 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), m… ╎ ╎ 1 @Base/boot.jl:430; eval ╎ ╎ ╎ 1 …mpiler/typeinfer.jl:1135; typeinf_ext_toplevel(mi::Core.MethodI… ╎ ╎ ╎ 1 …mpiler/typeinfer.jl:1139; typeinf_ext_toplevel(interp::Core.Co… ╎ ╎ ╎ 1 …piler/typeinfer.jl:1101; typeinf_ext(interp::Core.Compiler.Na… ╎ ╎ ╎ 1 …piler/typeinfer.jl:215; typeinf(interp::Core.Compiler.Native… ╎ ╎ ╎ 1 …piler/typeinfer.jl:244; _typeinf(interp::Core.Compiler.Nati… ╎ ╎ ╎ ╎ 1 …interpretation.jl:3413; typeinf_nocycle(interp::Core.Compi… ╎ ╎ ╎ ╎ 1 …interpretation.jl:3331; typeinf_local(interp::Core.Compil… ╎ ╎ ╎ ╎ 1 …nterpretation.jl:3044; abstract_eval_basic_statement(int… ╎ ╎ ╎ ╎ 1 …nterpretation.jl:2752; abstract_eval_statement(interp::… ╎ ╎ ╎ ╎ 1 …terpretation.jl:2454; abstract_eval_statement_expr(int… ╎ ╎ ╎ ╎ ╎ 1 …terpretation.jl:2438; abstract_eval_call(interp::Core… ╎ ╎ ╎ ╎ ╎ 1 …terpretation.jl:2423; abstract_call(interp::Core.Com… ╎ ╎ ╎ ╎ ╎ 1 …erpretation.jl:2275; abstract_call(interp::Core.Com… ╎ ╎ ╎ ╎ ╎ 1 …erpretation.jl:2282; abstract_call(interp::Core.Co… ╎ ╎ ╎ ╎ ╎ 1 …rpretation.jl:2200; abstract_call_known(interp::C… ╎ ╎ ╎ ╎ ╎ ╎ 1 …rpretation.jl:111; abstract_call_gf_by_type(inte… ╎ ╎ ╎ ╎ ╎ ╎ 1 …rpretation.jl:823; abstract_call_method_with_co… ╎ ╎ ╎ ╎ ╎ ╎ 1 …rpretation.jl:853; abstract_call_method_with_c… ╎ ╎ ╎ ╎ ╎ ╎ 1 …pretation.jl:1278; const_prop_call(interp::Co… ╎ ╎ ╎ ╎ ╎ ╎ 1 …typeinfer.jl:215; typeinf(interp::Core.Compi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ypeinfer.jl:244; _typeinf(interp::Core.Comp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:3413; typeinf_nocycle(interp::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:3331; typeinf_local(interp::C… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:3068; abstract_eval_basic_st… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:2752; abstract_eval_stateme… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:2454; abstract_eval_statem… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:2438; abstract_eval_call(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:2423; abstract_call(inte… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:2275; abstract_call(int… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …retation.jl:2282; abstract_call(in… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 …retation.jl:2200; abstract_call_kn… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 …retation.jl:102; abstract_call_gf_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 …retation.jl:660; abstract_call_met… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 …ypeinfer.jl:913; typeinf_edge(inte… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 …ncestate.jl:497; Core.Compiler.Inf… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 …tilities.jl:135; retrieve_code_info ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 …tilities.jl:123; get_staged(mi::Co… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 …ase/boot.jl:707; (::Core.Generated… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 none:0; var"#s40#57"(::Any, index_f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 …nterface.jl:120; #s40#57 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 …roadcast.jl:872; materialize(bc::B… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 …roadcast.jl:1102; copy ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 …e/ntuple.jl:48; ntuple ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 …roadcast.jl:1102; (::Base.Broadcas… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 …roadcast.jl:651; _broadcast_getind… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 …roadcast.jl:678; _broadcast_getind… /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/simulation.jl:496 Test threw exception Expression: du.A == d(0, earth) * A UndefVarError: `d` not defined in `Main` Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:676 [inlined] [2] macro expansion @ ~/.julia/packages/Decapodes/N0KVw/test/simulation.jl:496 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] top-level scope @ ~/.julia/packages/Decapodes/N0KVw/test/simulation.jl:328 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 [198] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Decapodes/N0KVw/test/simulation.jl:326 poptask at ./task.jl:1012 wait at ./task.jl:1021 _ZN4llvm7hashing6detail10hash_shortEPKcmm at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm12hash_combineIJjjPNS_8MetadataES2_bEEENS_9hash_codeEDpRKT_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 _ZNK4llvm12DenseMapBaseINS_8DenseMapIPNS_10DILocationENS_6detail13DenseSetEmptyENS_10MDNodeInfoIS2_EENS4_12DenseSetPairIS3_EEEES3_S5_S7_S9_E15LookupBucketForIS3_EEbRKT_RPKS9_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6MDNode9storeImplINS_10DILocationENS_8DenseSetIPS2_NS_10MDNodeInfoIS2_EEEEEEPT_S9_NS_8Metadata11StorageTypeERT0_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm10DILocation7getImplERNS_11LLVMContextEjjPNS_8MetadataES4_bNS3_11StorageTypeEb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) getImpl at /source/usr/include/llvm/IR/DebugInfoMetadata.h:1621 [inlined] get at /source/usr/include/llvm/IR/DebugInfoMetadata.h:1641 [inlined] emit_function at /source/src/codegen.cpp:8803 jl_emit_code at /source/src/codegen.cpp:9549 jl_emit_codeinst at /source/src/codegen.cpp:9635 jl_compile_workqueue at /source/src/codegen.cpp:9756 _jl_compile_codeinst at /source/src/jitlayers.cpp:224 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2536 [inlined] jl_compile_method_internal at /source/src/gf.c:2423 _jl_invoke at /source/src/gf.c:2940 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 profile_printing_listener at ./Base.jl:577 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 #1190 at ./Base.jl:617 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7f3eb1737122) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 jfptr_YY.1190_76096.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 eval_value at /source/src/interpreter.c:223 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 26330915 (Pool: 26329451; Big: 1464); GC: 30 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 error at ./error.jl:35 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7f3ec9aff082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 #schedule#761 at ./task.jl:884 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 jfptr_uv_writecb_task_67080.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _start at ./client.jl:531 jlcapi_uv_writecb_task_67543.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7f3ecab41249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) Allocations: 296150607 (Pool: 296142496; Big: 8111); GC: 137 poptask at ./task.jl:1012 wait at ./task.jl:1021 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 showerror at ./errorshow.jl:152 unknown function (ip: 0x77b008b847f6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _atexit at ./initdefs.jl:462 jfptr__atexit_69596.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2724.46s: test duration exceeded the time limit