Package evaluation of Dataverse on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T14:49:23.736 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.45s ################################################################################ # Installation # Installing Dataverse... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [9c0b9be8] + Dataverse v0.2.7 Updating `~/.julia/environments/v1.11/Manifest.toml` [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [9c0b9be8] + Dataverse v0.2.7 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [cd3eb016] + HTTP v1.10.15 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.1.0 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.5.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [458c3c95] + OpenSSL_jll v3.0.16+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.64s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 103.21s ################################################################################ # Testing # Testing Dataverse Status `/tmp/jl_qhDwhu/Project.toml` [9c0b9be8] Dataverse v0.2.7 [6099a3de] PythonCall v0.9.24 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 Status `/tmp/jl_qhDwhu/Manifest.toml` [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.27 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [9c0b9be8] Dataverse v0.2.7 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [cd3eb016] HTTP v1.10.15 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.2 [b964fa9f] LaTeXStrings v1.4.0 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [739be429] MbedTLS v1.1.9 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [6099a3de] PythonCall v0.9.24 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [e17b2a0c] UnsafePointers v1.0.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [a5390f91] ZipFile v0.10.1 [458c3c95] OpenSSL_jll v3.0.16+0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Resolving changes + libstdcxx-ng + openssl + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_qhDwhu/.CondaPkg ✔ Created /tmp/jl_qhDwhu/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_qhDwhu/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.1" │ libstdcxx-ng = ">=3.4,<13.0" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_qhDwhu/.CondaPkg/pixi.toml ✔ The default environment has been installed. Precompiling DataverseCondaPkgExt... 3788.6 ms ✓ MicroMamba Info Given DataverseCondaPkgExt was explicitly requested, output will be shown live  WARNING: Method definition pyDataverse_install() in module Dataverse at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/src/Dataverse.jl:6 overwritten in module DataverseCondaPkgExt at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/ext/DataverseCondaPkgExt.jl:5. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 9002.3 ms ? Dataverse → DataverseCondaPkgExt 1 dependency successfully precompiled in 15 seconds. 84 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ Dataverse → DataverseCondaPkgExt │ [Output was shown above] └ WARNING: Method definition pyDataverse_install() in module Dataverse at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/src/Dataverse.jl:6 overwritten in module DataverseCondaPkgExt at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/ext/DataverseCondaPkgExt.jl:5. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition pyDataverse_install() in module Dataverse at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/src/Dataverse.jl:6 overwritten in module DataverseCondaPkgExt at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/ext/DataverseCondaPkgExt.jl:5. Precompiling DataversePythonCallExt... 8972.5 ms ? Dataverse → DataverseCondaPkgExt Info Given DataversePythonCallExt was explicitly requested, output will be shown live  WARNING: Method definition pyDataverse_APIs() in module Dataverse at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/src/Dataverse.jl:7 overwritten in module DataversePythonCallExt at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/ext/DataversePythonCallExt.jl:16. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 17584.6 ms ? Dataverse → DataversePythonCallExt WARNING: Method definition pyDataverse_APIs() in module Dataverse at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/src/Dataverse.jl:7 overwritten in module DataversePythonCallExt at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/ext/DataversePythonCallExt.jl:16. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition pyDataverse_APIs() in module Dataverse at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/src/Dataverse.jl:7 overwritten in module DataversePythonCallExt at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/ext/DataversePythonCallExt.jl:16. CondaPkg Found dependencies: /tmp/jl_qhDwhu/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Resolving changes + pydataverse CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_qhDwhu/.CondaPkg ✔ Created /tmp/jl_qhDwhu/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_qhDwhu/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.1" │ libstdcxx-ng = ">=3.4,<13.0" │ pydataverse = "*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_qhDwhu/.CondaPkg/pixi.toml ✔ The default environment has been installed. Dataverse.jl: Error During Test at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/test/runtests.jl:15 Got exception outside of a @test BoundsError: attempt to access 1-element Vector{SubString{String}} at index [2] Stacktrace: [1] throw_boundserror(A::Vector{SubString{String}}, I::Tuple{Int64}) @ Base ./essentials.jl:14 [2] getindex @ ./essentials.jl:916 [inlined] [3] html_to_json_ld(file_html1::String) @ Dataverse.json_ld ~/.julia/packages/Dataverse/jLQ3W/src/json_ld.jl:52 [4] #get#1 @ ~/.julia/packages/Dataverse/jLQ3W/src/json_ld.jl:20 [inlined] [5] get(doi::String) @ Dataverse.json_ld ~/.julia/packages/Dataverse/jLQ3W/src/json_ld.jl:18 [6] macro expansion @ ~/.julia/packages/Dataverse/jLQ3W/test/runtests.jl:19 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [8] top-level scope @ ~/.julia/packages/Dataverse/jLQ3W/test/runtests.jl:16 [9] include(fname::String) @ Main ./sysimg.jl:38 [10] top-level scope @ none:6 [11] eval @ ./boot.jl:430 [inlined] [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [13] _start() @ Base ./client.jl:531 Test Summary: | Pass Error Total Time Dataverse.jl | 1 1 2 42.4s ERROR: LoadError: Some tests did not pass: 1 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Dataverse/jLQ3W/test/runtests.jl:15 Testing failed after 178.63s ERROR: LoadError: Package Dataverse errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 326.15s: illegal method overwrites during precompilation