Package evaluation of DCAUtils on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T08:31:04.444


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.1s


################################################################################
# Installation
#

Installing DCAUtils...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [e41cd558] + DCAUtils v1.1.0
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [e41cd558] + DCAUtils v1.1.0
  [a0c94c4b] + FastaIO v1.1.0
  [92fee26a] + GZip v0.6.2
  [56f22d72] + Artifacts v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0

Installation completed after 1.55s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 14.65s


################################################################################
# Testing
#

     Testing DCAUtils
      Status `/tmp/jl_bkB16g/Project.toml`
  [e41cd558] DCAUtils v1.1.0
⌅ [033835bb] JLD2 v0.4.54
  [4af54fe1] LazyArtifacts v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_bkB16g/Manifest.toml`
  [e41cd558] DCAUtils v1.1.0
  [a0c94c4b] FastaIO v1.1.0
  [5789e2e9] FileIO v1.17.0
  [92fee26a] GZip v0.6.2
⌅ [033835bb] JLD2 v0.4.54
  [1914dd2f] MacroTools v0.5.15
  [bac558e1] OrderedCollections v1.8.0
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [ae029012] Requires v1.3.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
[ Info: Loading results data
[ Info: Attempting to dynamically load CodecZlib
ERROR: LoadError: ArgumentError: Package CodecZlib not found in current path.
- Run `import Pkg; Pkg.add("CodecZlib")` to install the CodecZlib package.
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2296 [inlined]
  [2] macro expansion
    @ ./lock.jl:273 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2271
  [4] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
  [5] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2260
  [7] eval
    @ ./boot.jl:430 [inlined]
  [8] (::JLD2.var"#106#107"{Symbol})()
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/compression.jl:43
  [9] lock(f::JLD2.var"#106#107"{Symbol}, l::ReentrantLock)
    @ Base ./lock.jl:232
 [10] checked_import
    @ ~/.julia/packages/JLD2/wLPAN/src/compression.jl:38 [inlined]
 [11] get_decompressor(filters::JLD2.FilterPipeline)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/compression.jl:111
 [12] read_compressed_array!(v::Matrix{Float64}, f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Float64, Float64}, data_length::Int64, filters::JLD2.FilterPipeline)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/compression.jl:219
 [13] read_array(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:248
 [14] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:100
 [15] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86
 [16] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50
 [17] jlconvert(::JLD2.ReadRepresentation{Matrix{Float64}, JLD2.RelOffset}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, ::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320
 [18] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/data/reconstructing_datatypes.jl:781 [inlined]
 [19] jlconvert(::JLD2.ReadRepresentation{Pair{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, JLD2.OnDiskRepresentation{(0, 8), Tuple{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, Tuple{JLD2.RelOffset, JLD2.RelOffset}, 16}()}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/reconstructing_datatypes.jl:700
 [20] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37
 [21] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98
 [22] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86
 [23] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50
 [24] jlconvert(::JLD2.ReadRepresentation{Pair{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, JLD2.RelOffset}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, ::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320
 [25] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:70 [inlined]
 [26] macro expansion
    @ ./simdloop.jl:77 [inlined]
 [27] read_array!(v::Vector{Pair{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}}, f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Pair{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, JLD2.RelOffset})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:68
 [28] read_array(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:250
 [29] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Any, JLD2.RelOffset}, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:136
 [30] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86
 [31] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50
 [32] jlconvert(::JLD2.ReadRepresentation{Dict{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, JLD2.CustomSerialization{Array, JLD2.RelOffset}}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/custom_serialization.jl:60
 [33] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37
 [34] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98
--- the above 20 lines are repeated 1 more time ---
 [55] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86
 [56] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50
 [57] jlconvert
    @ ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320 [inlined]
 [58] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/data/reconstructing_datatypes.jl:781 [inlined]
 [59] jlconvert(::JLD2.ReadRepresentation{Pair{String, Any}, JLD2.OnDiskRepresentation{(0, 16), Tuple{String, Any}, Tuple{JLD2.Vlen{String}, JLD2.RelOffset}, 24}()}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/reconstructing_datatypes.jl:700
 [60] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37
 [61] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98
 [62] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86
 [63] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50
 [64] jlconvert(::JLD2.ReadRepresentation{Pair{String, Any}, JLD2.RelOffset}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, ::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320
 [65] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:70 [inlined]
 [66] macro expansion
    @ ./simdloop.jl:77 [inlined]
 [67] read_array!(v::Vector{Pair{String, Any}}, f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Pair{String, Any}, JLD2.RelOffset})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:68
 [68] read_array(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:250
 [69] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Any, JLD2.RelOffset}, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:136
 [70] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86
 [71] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50
 [72] jlconvert(::JLD2.ReadRepresentation{Dict{String, Any}, JLD2.CustomSerialization{Array, JLD2.RelOffset}}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/custom_serialization.jl:60
 [73] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37
 [74] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98
 [75] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86
 [76] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50
 [77] getindex(g::JLD2.Group{JLD2.JLDFile{JLD2.MmapIO}}, name::String)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/groups.jl:99
 [78] read
    @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:368 [inlined]
 [79] (::Main.DCAUtilsTests.var"#1#2")(f::JLD2.JLDFile{JLD2.MmapIO})
    @ Main.DCAUtilsTests ~/.julia/packages/JLD2/wLPAN/src/loadsave.jl:153
 [80] jldopen(f::Function, args::String; kws::@Kwargs{})
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/loadsave.jl:4
 [81] jldopen(f::Function, args::String)
    @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/loadsave.jl:1
 [82] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/loadsave.jl:152 [inlined]
 [83] top-level scope
    @ ~/.julia/packages/DCAUtils/kq0WV/test/runtests.jl:14
 [84] include(fname::String)
    @ Main ./sysimg.jl:38
in expression starting at /home/pkgeval/.julia/packages/DCAUtils/kq0WV/test/runtests.jl:1

Testing failed after 117.89s

ERROR: LoadError: Package DCAUtils errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 154.42s: package is using an unknown package