Package evaluation of DANDIArchive on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T10:45:04.036 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.15s ################################################################################ # Installation # Installing DANDIArchive... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [47d7f1a7] + DANDIArchive v0.51.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [992eb4ea] + CondaPkg v0.2.27 [47d7f1a7] + DANDIArchive v0.51.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.2 [1914dd2f] + MacroTools v0.5.15 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [fa939f87] + Pidfile v1.3.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.24 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.99s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 72.35s ################################################################################ # Testing # Testing DANDIArchive Status `/tmp/jl_HMAHqG/Project.toml` [47d7f1a7] DANDIArchive v0.51.0 [f43a241f] Downloads v1.6.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HMAHqG/Manifest.toml` [992eb4ea] CondaPkg v0.2.27 [47d7f1a7] DANDIArchive v0.51.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.2 [1914dd2f] MacroTools v0.5.15 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.24 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [e17b2a0c] UnsafePointers v1.0.0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [83775a58] Zlib_jll v1.2.13+1 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/CondaPkg.toml CondaPkg Resolving changes + dandi + h5py + libstdcxx-ng + pynwb + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_HMAHqG/.CondaPkg ✔ Created /tmp/jl_HMAHqG/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_HMAHqG/.CondaPkg/pixi.toml │ [dependencies] │ dandi = "==0.51" │ libstdcxx-ng = ">=3.4,<13.0" │ h5py = "*" │ pynwb = "*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_HMAHqG/.CondaPkg/pixi.toml ✔ The default environment has been installed. ERROR: LoadError: InitError: Python: ImportError: cannot import name 'inspect_nwb' from 'nwbinspector' (/tmp/jl_HMAHqG/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/nwbinspector/__init__.py) Python stacktrace: [1] @ /tmp/jl_HMAHqG/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/bases.py:22 [2] @ /tmp/jl_HMAHqG/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/_private.py:17 [3] @ /tmp/jl_HMAHqG/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/__init__.py:23 [4] @ /tmp/jl_HMAHqG/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/download.py:52 Stacktrace: [1] pythrow() @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:92 [2] errcheck @ ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:10 [inlined] [3] pyimport(m::String) @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/builtins.jl:1561 [4] top-level scope @ none:1 [5] eval @ ./boot.jl:430 [inlined] [6] eval @ ~/.julia/packages/DANDIArchive/B2vzr/src/DANDIArchive.jl:1 [inlined] [7] |> @ ./operators.jl:926 [inlined] [8] _broadcast_getindex_evalf @ ./broadcast.jl:678 [inlined] [9] _broadcast_getindex @ ./broadcast.jl:651 [inlined] [10] getindex @ ./broadcast.jl:610 [inlined] [11] copyto_nonleaf!(dest::Vector{PythonCall.Core.Py}, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(|>), Tuple{Base.Broadcast.Extruded{Vector{Expr}, Tuple{Bool}, Tuple{Int64}}, Base.RefValue{typeof(DANDIArchive.eval)}}}, iter::Base.OneTo{Int64}, state::Int64, count::Int64) @ Base.Broadcast ./broadcast.jl:1082 [12] copy @ ./broadcast.jl:919 [inlined] [13] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(|>), Tuple{Vector{Expr}, Base.RefValue{typeof(DANDIArchive.eval)}}}) @ Base.Broadcast ./broadcast.jl:872 [14] __init__() @ DANDIArchive ~/.julia/packages/DANDIArchive/B2vzr/src/DANDIArchive.jl:14 [15] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [16] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [17] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [18] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [19] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [20] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [21] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [22] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [23] invoke_in_world @ ./essentials.jl:1086 [inlined] [24] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [25] macro expansion @ ./loading.jl:2314 [inlined] [26] macro expansion @ ./lock.jl:273 [inlined] [27] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [28] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [29] invoke_in_world @ ./essentials.jl:1086 [inlined] [30] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [31] include(fname::String) @ Main ./sysimg.jl:38 [32] top-level scope @ none:6 during initialization of module DANDIArchive in expression starting at /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/test/runtests.jl:1 Testing failed after 70.81s ERROR: LoadError: Package DANDIArchive errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 222.37s: package tests unexpectedly errored