Package evaluation of Cthonios on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T20:35:20.641 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.01s ################################################################################ # Installation # Installing Cthonios... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [a67e86c2] + Cthonios v0.2.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [14f7f29c] + AMD v0.5.3 [79e6a3ab] + Adapt v4.3.0 [c7e460c6] + ArgParse v1.2.0 [4fba245c] + ArrayInterface v7.18.0 ⌅ [a9b6321e] + Atomix v0.1.0 [fa961155] + CEnum v0.5.0 [d360d2e6] + ChainRulesCore v1.25.1 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b0b7db55] + ComponentArrays v0.15.26 [fc6ee7eb] + ConstitutiveModels v0.1.4 [187b0558] + ConstructionBase v1.5.8 [a67e86c2] + Cthonios v0.2.2 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.4 [7da242da] + Enzyme v0.13.35 [f151be2c] + EnzymeCore v0.8.8 [f57ae99e] + Exodus v0.13.7 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.0.2 [d08262e4] + FiniteElementContainers v0.5.9 ⌅ [f6369f11] + ForwardDiff v0.10.38 [d9f16b24] + Functors v0.5.2 [61eb1bfa] + GPUCompiler v1.3.2 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [40e66cde] + LDLFactorizations v0.10.1 [929cbde3] + LLVM v9.2.0 [f5a24dde] + LimitedLDLFactorizations v0.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [c03570c3] + Memoize v0.4.4 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [d8793406] + ObjectFile v0.4.4 [bac558e1] + OrderedCollections v1.8.0 [d96e819e] + Parameters v0.12.3 [f27b6e38] + Polynomials v4.0.19 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [6dc62d09] + ReferenceFiniteElements v0.12.3 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [fdea26ae] + SIMD v3.7.1 [6c6a2e73] + Scratch v1.2.1 [efcf1570] + Setfield v1.1.2 [276daf66] + SpecialFunctions v2.5.0 ⌅ [a25cea48] + SpecialPolynomials v0.4.13 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 ⌅ [09ab397b] + StructArrays v0.6.21 [53d494c1] + StructIO v0.3.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [48a634ad] + Tensors v1.16.2 [b718987f] + TextWrap v1.0.2 [a759f4b9] + TimerOutputs v0.5.28 [3a884ed6] + UnPack v1.0.2 ⌅ [013be700] + UnsafeAtomics v0.2.1 [ddb6d928] + YAML v0.4.13 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [7cc45869] + Enzyme_jll v0.0.173+0 [fc7263ad] + Exodus_jll v8.19.1+0 ⌅ [5dc1e892] + Fmt_jll v9.1.0+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.12.0+0 [dad2f222] + LLVMExtra_jll v0.0.35+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 ⌃ [7243133f] + NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.56s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 340.28s ################################################################################ # Testing # Testing Cthonios Status `/tmp/jl_cPRCDj/Project.toml` [4c88cf16] Aqua v0.8.11 [c7e460c6] ArgParse v1.2.0 [b0b7db55] ComponentArrays v0.15.26 [fc6ee7eb] ConstitutiveModels v0.1.4 [a67e86c2] Cthonios v0.2.2 [ffbed154] DocStringExtensions v0.9.4 [7da242da] Enzyme v0.13.35 [f57ae99e] Exodus v0.13.7 [d08262e4] FiniteElementContainers v0.5.9 ⌅ [f6369f11] ForwardDiff v0.10.38 [42fd0dbc] IterativeSolvers v0.9.4 ⌅ [c3a54625] JET v0.9.19 [40e66cde] LDLFactorizations v0.10.1 [f5a24dde] LimitedLDLFactorizations v0.5.1 [d96e819e] Parameters v0.12.3 [189a3867] Reexport v1.2.2 [6dc62d09] ReferenceFiniteElements v0.12.3 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [90137ffa] StaticArrays v1.9.13 [48a634ad] Tensors v1.16.2 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.28 [ddb6d928] YAML v0.4.13 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_cPRCDj/Manifest.toml` [14f7f29c] AMD v0.5.3 [79e6a3ab] Adapt v4.3.0 [4c88cf16] Aqua v0.8.11 [c7e460c6] ArgParse v1.2.0 [4fba245c] ArrayInterface v7.18.0 ⌅ [a9b6321e] Atomix v0.1.0 [fa961155] CEnum v0.5.0 [d360d2e6] ChainRulesCore v1.25.1 [da1fd8a2] CodeTracking v1.3.9 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [b0b7db55] ComponentArrays v0.15.26 [fc6ee7eb] ConstitutiveModels v0.1.4 [187b0558] ConstructionBase v1.5.8 [a67e86c2] Cthonios v0.2.2 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.4 [7da242da] Enzyme v0.13.35 [f151be2c] EnzymeCore v0.8.8 [f57ae99e] Exodus v0.13.7 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.0.2 [d08262e4] FiniteElementContainers v0.5.9 ⌅ [f6369f11] ForwardDiff v0.10.38 [d9f16b24] Functors v0.5.2 [61eb1bfa] GPUCompiler v1.3.2 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.4 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.9.19 [692b3bcd] JLLWrappers v1.7.0 [aa1ae85d] JuliaInterpreter v0.9.42 ⌅ [70703baa] JuliaSyntax v0.4.10 [40e66cde] LDLFactorizations v0.10.1 [929cbde3] LLVM v9.2.0 [f5a24dde] LimitedLDLFactorizations v0.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [c03570c3] Memoize v0.4.4 [46d2c3a1] MuladdMacro v0.2.4 [77ba4419] NaNMath v1.1.3 [d8793406] ObjectFile v0.4.4 [bac558e1] OrderedCollections v1.8.0 [d96e819e] Parameters v0.12.3 [f27b6e38] Polynomials v4.0.19 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [6dc62d09] ReferenceFiniteElements v0.12.3 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [fdea26ae] SIMD v3.7.1 [6c6a2e73] Scratch v1.2.1 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.5.0 ⌅ [a25cea48] SpecialPolynomials v0.4.13 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 ⌅ [09ab397b] StructArrays v0.6.21 [53d494c1] StructIO v0.3.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [48a634ad] Tensors v1.16.2 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [b718987f] TextWrap v1.0.2 [a759f4b9] TimerOutputs v0.5.28 [3a884ed6] UnPack v1.0.2 ⌅ [013be700] UnsafeAtomics v0.2.1 [ddb6d928] YAML v0.4.13 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [7cc45869] Enzyme_jll v0.0.173+0 [fc7263ad] Exodus_jll v8.19.1+0 ⌅ [5dc1e892] Fmt_jll v9.1.0+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [e33a78d0] Hwloc_jll v2.12.0+0 [dad2f222] LLVMExtra_jll v0.0.35+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 ⌃ [7243133f] NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] OpenMPI_jll v4.1.8+1 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling Cthonios... 2910.3 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 10349.6 ms ✓ SpecialPolynomials 5656.2 ms ✓ Exodus 67767.7 ms ✓ ConstitutiveModels → ConstitutiveModelsEnzymeExt 21424.7 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 65891.1 ms ✓ Enzyme → EnzymeStaticArraysExt 20483.7 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 6427.0 ms ✓ SpecialPolynomials → SpecialPolynomialsFastGaussQuadratureExt 3403.0 ms ✓ Exodus → ExodusAdaptExt 7053.5 ms ✓ ReferenceFiniteElements 4765.9 ms ✓ ReferenceFiniteElements → ReferenceFiniteElementsAdaptExt 8074.7 ms ✓ ReferenceFiniteElements → ReferenceFiniteElementsExodusExt 91161.8 ms ✓ FiniteElementContainers 9848.3 ms ✓ FiniteElementContainers → FiniteElementContainersExodusExt 6210.8 ms ✓ FiniteElementContainers → FiniteElementContainersAdaptExt 744616.1 ms ✓ Cthonios 16 dependencies successfully precompiled in 1079 seconds. 149 already precompiled. bc_input = DirichletBC: Node set = nset_inner_top Dofs = [1] Function = #1 ......bc = DirichletBCInternal: Numbe of active dofs = 54 Function = #2 .. Test Summary: | Pass Total Time Dirichlet Boundary Conditions | 8 8 6.3s bc_input = NeumannBC: Side set = sset_inner_top Function = #9 ..bc = NeumannBCInternal: Numbe of active elements = 26 Function = #9 . Test Summary: | Pass Total Time Neumann Boundary Conditions | 3 3 1.4s [ Info: Reading mesh from window_pain_tri3.g .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Test Summary: | Pass Total Time Domains | 580 580 27.7s time = QuasiStatic{Vector{Int64}, Float64, Vector{Float64}}: Start time = 0.0 End time = 1.0 Time step = [0.1] ............................................................ Test Summary: | Pass Total Time TimeSteppers | 60 60 0.5s [ Info: Reading mesh from window_pain_tri3.g ................................................................................................................................................................................................................................................................................................ Test Summary: | Pass Total Time Objectives | 288 288 18.3s ...... Test Summary: | Pass Total Time PostProcessors | 6 6 1.4s [ Info: Reading mesh from window_pain_tri3.g [ Info: ================================================================================================ [ Info: = Load step 1 [ Info: = Old Time 0.0 [ Info: = New Time 0.05 [ Info: = End Time 1.0 [ Info: = % Completete 5.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 5.636188e-06 [ Info: Initial residual = 2.127941e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.733012e-08 -1.734842e-08 3.602928e-07 2.131373e-04 2 2.000000e+00 interior true [ Info: -4.695232e-14 -4.695256e-14 1.915105e-10 3.602995e-07 2 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 2 [ Info: = Old Time 0.05 [ Info: = New Time 0.1 [ Info: = End Time 1.0 [ Info: = % Completete 10.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 2.258074e-05 [ Info: Initial residual = 2.177706e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.828932e-08 -1.830950e-08 3.843980e-07 2.181354e-04 2 2.000000e+00 interior true [ Info: -5.493547e-14 -5.493619e-14 1.441165e-12 3.843968e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 3 [ Info: = Old Time 0.1 [ Info: = New Time 0.15000000000000002 [ Info: = End Time 1.0 [ Info: = % Completete 15.000000000000002 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 5.097392e-05 [ Info: Initial residual = 2.230977e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.948752e-08 -1.951016e-08 4.152824e-07 2.234876e-04 2 2.000000e+00 interior true [ Info: -6.757531e-14 -6.757592e-14 1.788147e-12 4.152814e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 4 [ Info: = Old Time 0.15000000000000002 [ Info: = New Time 0.2 [ Info: = End Time 1.0 [ Info: = % Completete 20.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 9.092419e-05 [ Info: Initial residual = 2.288928e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -2.110301e-08 -2.112913e-08 4.613252e-07 2.293122e-04 2 2.000000e+00 interior true [ Info: -9.242661e-14 -9.242529e-14 3.854802e-12 4.613260e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 5 [ Info: = Old Time 0.2 [ Info: = New Time 0.25 [ Info: = End Time 1.0 [ Info: = % Completete 25.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 1.425114e-04 [ Info: Initial residual = 2.353653e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -2.351138e-08 -2.354274e-08 5.506185e-07 2.358190e-04 2 2.000000e+00 interior true [ Info: -1.585085e-13 -1.585074e-13 1.585619e-11 5.506288e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 6 [ Info: = Old Time 0.25 [ Info: = New Time 0.3 [ Info: = End Time 1.0 [ Info: = % Completete 30.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 2.057610e-04 [ Info: Initial residual = 2.429429e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -2.754838e-08 -2.758771e-08 7.801307e-07 2.434279e-04 2 2.000000e+00 interior true [ Info: -4.016923e-13 -4.016881e-13 6.662327e-11 7.801705e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 7 [ Info: = Old Time 0.3 [ Info: = New Time 0.35 [ Info: = End Time 1.0 [ Info: = % Completete 35.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 2.805898e-04 [ Info: Initial residual = 2.526799e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -3.510029e-08 -3.514725e-08 1.425949e-06 2.531419e-04 2 2.000000e+00 interior true [ Info: -1.544492e-12 -1.544478e-12 9.932273e-12 1.425942e-06 4 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 8 [ Info: = Old Time 0.35 [ Info: = New Time 0.39999999999999997 [ Info: = End Time 1.0 [ Info: = % Completete 40.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 3.666943e-04 [ Info: Initial residual = 2.678046e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -4.994487e-08 -4.995589e-08 3.009193e-06 2.679297e-04 2 2.000000e+00 interior true [ Info: -7.100815e-12 -7.100798e-12 1.666755e-11 3.009193e-06 4 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 9 [ Info: = Old Time 0.39999999999999997 [ Info: = New Time 0.44999999999999996 [ Info: = End Time 1.0 [ Info: = % Completete 44.99999999999999 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 4.633323e-04 [ Info: Initial residual = 2.991599e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -7.611204e-08 -7.578668e-08 5.451498e-06 2.979321e-04 2 2.000000e+00 interior true [ Info: -2.474247e-11 -2.474133e-11 1.765130e-10 5.451377e-06 4 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 10 [ Info: = Old Time 0.44999999999999996 [ Info: = New Time 0.49999999999999994 [ Info: = End Time 1.0 [ Info: = % Completete 49.99999999999999 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 5.690510e-04 [ Info: Initial residual = 3.708219e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.095532e-07 -1.084087e-07 5.285116e-06 3.683528e-04 2 2.000000e+00 interior true [ Info: -4.698564e-11 -4.696623e-11 3.281726e-09 5.281932e-06 4 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 11 [ Info: = Old Time 0.49999999999999994 [ Info: = New Time 0.5499999999999999 [ Info: = End Time 1.0 [ Info: = % Completete 54.99999999999999 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 6.817581e-04 [ Info: Initial residual = 4.742108e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.474328e-07 -1.467589e-07 1.708442e-06 4.736365e-04 2 2.000000e+00 interior true [ Info: -3.788267e-11 -3.788657e-11 4.162066e-09 1.705303e-06 4 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 12 [ Info: = Old Time 0.5499999999999999 [ Info: = New Time 0.6 [ Info: = End Time 1.0 [ Info: = % Completete 60.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 7.993434e-04 [ Info: Initial residual = 5.274693e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.773321e-07 -1.773624e-07 6.628497e-07 5.278832e-04 2 2.000000e+00 interior true [ Info: -6.801716e-13 -6.801887e-13 1.232871e-10 6.627250e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 13 [ Info: = Old Time 0.6 [ Info: = New Time 0.65 [ Info: = End Time 1.0 [ Info: = % Completete 65.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 9.202123e-04 [ Info: Initial residual = 5.075574e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.702002e-07 -1.700925e-07 6.407109e-07 5.076850e-04 2 2.000000e+00 interior true [ Info: -7.545685e-12 -7.544577e-12 5.734998e-10 6.405392e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 14 [ Info: = Old Time 0.65 [ Info: = New Time 0.7000000000000001 [ Info: = End Time 1.0 [ Info: = % Completete 70.0 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 1.043369e-03 [ Info: Initial residual = 4.564996e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.413952e-07 -1.411854e-07 6.922196e-07 4.564057e-04 2 2.000000e+00 interior true [ Info: -1.004362e-11 -1.004207e-11 6.325648e-10 6.918866e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 15 [ Info: = Old Time 0.7000000000000001 [ Info: = New Time 0.7500000000000001 [ Info: = End Time 1.0 [ Info: = % Completete 75.00000000000001 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 1.168198e-03 [ Info: Initial residual = 4.032164e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -1.116402e-07 -1.114513e-07 6.285350e-07 4.030772e-04 2 2.000000e+00 interior true [ Info: -6.803744e-12 -6.802988e-12 3.639641e-10 6.283120e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 16 [ Info: = Old Time 0.7500000000000001 [ Info: = New Time 0.8000000000000002 [ Info: = End Time 1.0 [ Info: = % Completete 80.00000000000001 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 1.294290e-03 [ Info: Initial residual = 3.568510e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -8.765048e-08 -8.751110e-08 5.258462e-07 3.567331e-04 2 2.000000e+00 interior true [ Info: -3.865974e-12 -3.865687e-12 1.803182e-10 5.257294e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 17 [ Info: = Old Time 0.8000000000000002 [ Info: = New Time 0.8500000000000002 [ Info: = End Time 1.0 [ Info: = % Completete 85.00000000000001 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 1.421366e-03 [ Info: Initial residual = 3.184993e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -6.960728e-08 -6.951027e-08 4.306623e-07 3.184153e-04 2 2.000000e+00 interior true [ Info: -2.121583e-12 -2.121477e-12 8.836684e-11 4.306036e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 18 [ Info: = Old Time 0.8500000000000002 [ Info: = New Time 0.9000000000000002 [ Info: = End Time 1.0 [ Info: = % Completete 90.00000000000003 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 1.549224e-03 [ Info: Initial residual = 2.870683e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -5.620305e-08 -5.613617e-08 3.541162e-07 2.870141e-04 2 2.000000e+00 interior true [ Info: -1.180711e-12 -1.180676e-12 4.486272e-11 3.540859e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 19 [ Info: = Old Time 0.9000000000000002 [ Info: = New Time 0.9500000000000003 [ Info: = End Time 1.0 [ Info: = % Completete 95.00000000000003 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 1.677717e-03 [ Info: Initial residual = 2.611685e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -4.616359e-08 -4.611708e-08 2.950774e-07 2.611373e-04 2 2.000000e+00 interior true [ Info: -6.778384e-13 -6.778239e-13 2.393858e-11 2.950611e-07 3 2.000000e+00 interior true [ Info: Converged [ Info: ================================================================================================ [ Info: = Load step 20 [ Info: = Old Time 0.9500000000000003 [ Info: = New Time 1.0000000000000002 [ Info: = End Time 1.0 [ Info: = % Completete 100.00000000000003 [ Info: ================================================================================================ [ Info: Warm start [ Info: Initial objective = 1.806735e-03 [ Info: Initial residual = 2.396011e-04 [ Info: Updating preconditioner, attempt = 1 [ Info: ============================================================================================================================== [ Info: Objective Model Objective Residual Model Residual CG TR size [ Info: ============================================================================================================================== [ Info: -3.852848e-08 -3.849564e-08 2.497946e-07 2.395865e-04 2 2.000000e+00 interior true [ Info: -4.033807e-13 -4.033729e-13 1.345819e-11 2.497854e-07 3 2.000000e+00 interior true [ Info: Converged ────────────────────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 164s / 6.6% 3.96GiB / 8.2% Section ncalls time %tot avg alloc %tot avg ────────────────────────────────────────────────────────────────────────────────────────────────────────────────── Problem - solve! 1 9.13s 84.1% 9.13s 283MiB 84.9% 283MiB Integrator step 20 9.12s 84.0% 456ms 282MiB 84.8% 14.1MiB TrustRegionSolver - solve! 20 9.11s 83.9% 456ms 282MiB 84.6% 14.1MiB TrustRegionSolver - minimization 40 1.62s 14.9% 40.5ms 17.9MiB 5.4% 458KiB Objective - hvp 128 769ms 7.1% 6.01ms 1.43MiB 0.4% 11.5KiB Objective - hvp! 128 768ms 7.1% 6.00ms 0.00B 0.0% 0.00B TrustRegionSolver - cauchy point 40 996ms 9.2% 24.9ms 10.7MiB 3.2% 275KiB Objective - hvp 40 241ms 2.2% 6.03ms 459KiB 0.1% 11.5KiB Objective - hvp! 40 241ms 2.2% 6.01ms 0.00B 0.0% 0.00B TrustRegionSolver - warm start 20 662ms 6.1% 33.1ms 42.6MiB 12.8% 2.13MiB Warm start - solve! 20 662ms 6.1% 33.1ms 42.6MiB 12.8% 2.13MiB Objective - hessian! 20 162ms 1.5% 8.10ms 8.51MiB 2.6% 436KiB WarmStart - solve 20 118ms 1.1% 5.90ms 32.6MiB 9.8% 1.63MiB WarmStart - AD 20 47.6ms 0.4% 2.38ms 0.00B 0.0% 0.00B Objective - hvp 40 241ms 2.2% 6.02ms 459KiB 0.1% 11.5KiB Objective - hvp! 40 240ms 2.2% 6.01ms 0.00B 0.0% 0.00B CholeskyPreconditioner - update_preconditioner! 20 236ms 2.2% 11.8ms 39.4MiB 11.8% 1.97MiB Objective - hessian! 20 183ms 1.7% 9.17ms 8.51MiB 2.6% 436KiB Objective - objective 80 91.6ms 0.8% 1.15ms 5.69KiB 0.0% 72.8B Objective - objective! 80 91.5ms 0.8% 1.14ms 0.00B 0.0% 0.00B Objective - gradient 60 80.1ms 0.7% 1.33ms 704B 0.0% 11.7B Objectives - gradient! 60 79.4ms 0.7% 1.32ms 0.00B 0.0% 0.00B ExodusPostProcessor - write_output 21 7.91ms 0.1% 377μs 242KiB 0.1% 11.5KiB TrustRegionSolver - setup 1 1.73s 15.9% 1.73s 50.3MiB 15.1% 50.3MiB CholeskyPreconditioner - setup 1 326ms 3.0% 326ms 6.30MiB 1.9% 6.30MiB Objective - hessian! 1 7.58ms 0.1% 7.58ms 703KiB 0.2% 703KiB ────────────────────────────────────────────────────────────────────────────────────────────────────────────────── Test Summary: | Total Time Problems - Problem - TrustRegionSolver | 0 2m44.9s sections = Section[Section{Poisson{ScalarFormulation, Cthonios.Source{1, var"#23#28"}}, MaterialProperties{Dict{Symbol, Any}}}("unnamed_block_1", 1, Poisson{ScalarFormulation, Cthonios.Source{1, var"#23#28"}}(ScalarFormulation(), Cthonios.Laplacian{1}(), Cthonios.Source{1, var"#23#28"}(var"#23#28"())), MaterialProperties{Dict{Symbol, Any}}(Dict{Symbol, Any}()))] ........section = Cthonios.SectionInternal{NonAllocatedFunctionSpace{2, Vector{Int64}, FiniteElementContainers.VectorizedElementField{Int64, 2, 3, 1212, Vector{Int64}}, FiniteElementContainers.VectorizedElementField{Int64, 2, 6, 1212, Vector{Int64}}, ReferenceFiniteElements.ReferenceFE{Int64, Float64, ReferenceFiniteElements.Tri3{SpecialPolynomials.Lagrange, 2}, ReferenceFiniteElements.Edge{2, SpecialPolynomials.Lagrange, 1, 2}, ReferenceFiniteElements.ArrayBackend{SArray}, Vector{SVector{2, Int64}}, Vector{SVector{0, Union{}}}, Vector{Int64}, Vector{SVector{2, Float64}}, ReferenceFiniteElements.CellInterpolants{StructArrays.StructVector{ReferenceFiniteElements.Interpolants, @NamedTuple{ξ::Vector{SVector{2, Float64}}, w::Vector{Float64}, N::Vector{SVector{3, Float64}}, ∇N_ξ::Vector{SMatrix{3, 2, Float64, 6}}, ∇∇N_ξ::Vector{SArray{Tuple{3, 2, 2}, Float64, 3, 12}}}, Int64}}, Vector{Vector{SVector{2, Float64}}}, ReferenceFiniteElements.SurfaceInterpolants{StructArrays.StructArray{ReferenceFiniteElements.Interpolants, 2, @NamedTuple{ξ::Matrix{SVector{2, Float64}}, w::Matrix{Float64}, N::Matrix{SVector{3, Float64}}, ∇N_ξ::Matrix{SMatrix{3, 2, Float64, 6}}, ∇∇N_ξ::Matrix{SArray{Tuple{3, 2, 2}, Float64, 3, 12}}}, Int64}}}}, SolidMechanics{2, 2, 0, NeoHookean, PlaneStrain, Cthonios.StressDivergence{2, 2, 0, NeoHookean, PlaneStrain}}, SVector{2, Float64}}(1, 2, NonAllocatedFunctionSpace Reference finite element = ReferenceFE: Element Type = ReferenceFiniteElements.Tri3{SpecialPolynomials.Lagrange, 2} Surface Element Type = ReferenceFiniteElements.Edge{2, SpecialPolynomials.Lagrange, 1, 2} Interpolation Type = SpecialPolynomials.Lagrange Polynomial Degree = 1 Quadrature Degree = 2 Array Backend Type = ReferenceFiniteElements.ArrayBackend{SArray}() Edge Nodes Storage Type = Vector{SVector{2, Int64}} Face Nodes Storage Type = Vector{SVector{0, Union{}}} Interior Nodes Storage Type = Vector{Int64} Nodal Coordinates Storage Type = Vector{SVector{2, Float64}} CellInterpolants: Quadrature Point Storage Type = Vector{SVector{2, Float64}} Quadrature Weights Storage Type = Vector{Float64} Shape Function Values Storage Type = Vector{SVector{3, Float64}} Shape Function Gradients Storage Type = Vector{SMatrix{3, 2, Float64, 6}} Shape Function Hessians Storage Type = Vector{SArray{Tuple{3, 2, 2}, Float64, 3, 12}} Surface Nodal Coordinates Storage Type = Vector{Vector{SVector{2, Float64}}} CellInterpolants: Quadrature Point Storage Type = Matrix{SVector{2, Float64}} Quadrature Weights Storage Type = Matrix{Float64} Shape Function Values Storage Type = Matrix{SVector{3, Float64}} Shape Function Gradients Storage Type = Matrix{SMatrix{3, 2, Float64, 6}} Shape Function Hessians Storage Type = Matrix{SArray{Tuple{3, 2, 2}, Float64, 3, 12}} , SolidMechanics{2, 2, 0, NeoHookean, PlaneStrain, Cthonios.StressDivergence{2, 2, 0, NeoHookean, PlaneStrain}}(NeoHookean(), PlaneStrain(), Cthonios.StressDivergence{2, 2, 0, NeoHookean, PlaneStrain}(NeoHookean(), PlaneStrain())), [0.833, 0.3846]) ...... Test Summary: | Pass Total Time Sections | 14 14 3.0s ......... Test Summary: | Pass Total Time Aqua.jl | 9 9 2m58.6s JET.jl: JET-test failed at /home/pkgeval/.julia/packages/JET/yNWjn/src/JETBase.jl:1046 Expression: (JET.report_package)(Cthonios; toplevel_logger = nothing, target_defined_modules = true) ═════ 2 possible errors found ═════ ┌ @ Cthonios /home/pkgeval/.julia/packages/Cthonios/VFaSm/src/solvers/linear_solvers/Preconditioners.jl:99 │ no matching method found `kwcall(::@NamedTuple{α::Float64, α_increase_factor::Int64}, ::typeof(LimitedLDLFactorizations.lldl), ::Tuple{SparseArrays.SparseMatrixCSC, SparseArrays.SparseMatrixCSC})` (1/2 union split): Core.kwcall(NamedTuple{(:α, :α_increase_factor)}(tuple(1.0e-5, 10)::Tuple{Float64, Int64})::@NamedTuple{α::Float64, α_increase_factor::Int64}, Cthonios.lldl, H::Union{Tuple{SparseArrays.SparseMatrixCSC, SparseArrays.SparseMatrixCSC}, SparseArrays.SparseMatrixCSC}) └──────────────────── ┌ update_preconditioner!(P::Cthonios.LDLPreconditioner, obj::Any, Uu::Any, p::Any) @ Cthonios /home/pkgeval/.julia/packages/Cthonios/VFaSm/src/solvers/linear_solvers/Preconditioners.jl:137 │ no matching method found `ldl_factorize!(::Tuple{SparseArrays.SparseMatrixCSC, SparseArrays.SparseMatrixCSC}, ::Any)` (1/2 union split): val#48289 = Cthonios.ldl_factorize!(SparseArrays.sparse!((P::Cthonios.LDLPreconditioner).assembler::Any)::Union{Tuple{SparseArrays.SparseMatrixCSC, SparseArrays.SparseMatrixCSC}, SparseArrays.SparseMatrixCSC}, (P::Cthonios.LDLPreconditioner).preconditioner::Any) └──────────────────── Test Summary: | Fail Total Time JET.jl | 1 1 3m24.1s ERROR: LoadError: Some tests did not pass: 0 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Cthonios/VFaSm/test/runtests.jl:24 Testing failed after 1854.84s ERROR: LoadError: Package Cthonios errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2240.08s: package has test failures