Package evaluation of Colocalization on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T23:12:12.991


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.59s


################################################################################
# Installation
#

Installing Colocalization...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [5deedb61] + Colocalization v0.2.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
⌅ [79e6a3ab] + Adapt v3.7.2
  [66dad0bd] + AliasTables v1.1.3
  [c7e460c6] + ArgParse v1.2.0
  [ec485272] + ArnoldiMethod v0.4.0
⌃ [13072b0f] + AxisAlgorithms v1.0.1
  [39de3d68] + AxisArrays v0.4.7
  [fa961155] + CEnum v0.5.0
  [336ed68f] + CSV v0.10.15
  [aafaddc9] + CatIndices v0.2.2
  [d360d2e6] + ChainRulesCore v1.25.1
  [aaaa29a8] + Clustering v0.15.8
  [da1fd8a2] + CodeTracking v1.3.9
  [944b1d66] + CodecZlib v0.7.8
  [5deedb61] + Colocalization v0.2.1
⌃ [35d6a980] + ColorSchemes v3.26.0
⌅ [3da002f7] + ColorTypes v0.11.5
⌅ [c3611d14] + ColorVectorSpace v0.9.10
⌅ [5ae59095] + Colors v0.12.11
  [34da2185] + Compat v4.16.0
  [ed09eef8] + ComputationalResources v0.3.2
  [150eb455] + CoordinateTransformations v0.6.4
  [a8cc5b0e] + Crayons v4.1.1
  [dc8bdbbb] + CustomUnitRanges v1.0.2
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.118
  [ffbed154] + DocStringExtensions v0.9.4
  [4f61f5a4] + FFTViews v0.3.2
  [7a1cc6ca] + FFTW v1.8.1
  [5789e2e9] + FileIO v1.17.0
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [a2bd30eb] + Graphics v1.1.3
  [86223c79] + Graphs v1.12.1
  [34004b35] + HypergeometricFunctions v0.3.28
⌃ [2803e5a7] + ImageAxes v0.6.11
⌃ [c817782e] + ImageBase v0.1.5
  [f332f351] + ImageContrastAdjustment v0.3.12
⌅ [a09fc81d] + ImageCore v0.9.4
  [51556ac3] + ImageDistances v0.2.17
⌃ [6a3955dd] + ImageFiltering v0.7.6
⌃ [82e4d734] + ImageIO v0.6.8
⌃ [6218d12a] + ImageMagick v1.2.1
⌃ [bc367c6b] + ImageMetadata v0.9.9
⌅ [787d08f9] + ImageMorphology v0.3.2
  [2996bd0c] + ImageQualityIndexes v0.3.7
⌃ [80713f31] + ImageSegmentation v1.8.1
  [4e3cecfd] + ImageShow v0.3.8
⌅ [02fcd773] + ImageTransformations v0.9.5
⌅ [916415d5] + Images v0.25.3
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.3
  [1d092043] + IntegralArrays v0.1.6
⌅ [a98d9a8b] + Interpolations v0.14.7
  [8197267c] + IntervalSets v0.7.10
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] + JLD2 v0.4.54
  [692b3bcd] + JLLWrappers v1.7.0
  [b835a17e] + JpegTurbo v0.1.6
  [aa1ae85d] + JuliaInterpreter v0.9.42
  [b964fa9f] + LaTeXStrings v1.4.0
  [8cdb02fc] + LazyModules v0.3.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.1.0
  [6f1432cf] + LoweredCodeUtils v3.1.0
  [1914dd2f] + MacroTools v0.5.15
  [dbb5928d] + MappedArrays v0.4.2
⌅ [626554b9] + MetaGraphs v0.7.2
  [e1d29d7a] + Missings v1.2.0
  [e94cdb99] + MosaicViews v0.3.4
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.21
  [f09324ee] + Netpbm v1.1.1
  [6fe1bfb0] + OffsetArrays v1.16.0
  [52e1d378] + OpenEXR v0.3.3
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.33
  [f57f5aa1] + PNGFiles v0.4.4
  [5432bcbf] + PaddedViews v0.5.12
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.1
  [eebad327] + PkgVersion v0.3.3
  [2dfb63ee] + PooledArrays v1.4.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [4b34888f] + QOI v1.0.1
  [1fd47b50] + QuadGK v2.11.2
  [94ee1d12] + Quaternions v0.7.6
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [c1ae055f] + RealDot v0.1.0
  [189a3867] + Reexport v1.2.2
  [dee08c22] + RegionTrees v0.3.2
  [ae029012] + Requires v1.3.1
  [295af30f] + Revise v3.7.3
  [79098fc4] + Rmath v0.8.0
  [6038ab10] + Rotations v1.7.1
  [fdea26ae] + SIMD v3.7.1
  [91c51154] + SentinelArrays v1.4.8
  [699a6c99] + SimpleTraits v0.9.4
  [47aef6b3] + SimpleWeightedGraphs v1.5.0
  [45858cf5] + Sixel v0.1.3
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [cae243ae] + StackViews v0.1.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.4.0
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [62fd8b95] + TensorCore v0.1.1
  [b718987f] + TextWrap v1.0.2
⌅ [731e570b] + TiffImages v0.10.2
⌅ [06e1c1a7] + TiledIteration v0.3.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [3a884ed6] + UnPack v1.0.2
  [ea10d353] + WeakRefStrings v1.4.2
⌅ [efce3f68] + WoodburyMatrices v0.5.6
  [76eceee3] + WorkerUtilities v1.6.1
  [f5851436] + FFTW_jll v3.3.11+0
  [61579ee1] + Ghostscript_jll v9.55.0+4
⌅ [c73af94c] + ImageMagick_jll v6.9.13+0
  [905a6f67] + Imath_jll v3.1.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [aacddb02] + JpegTurbo_jll v3.1.1+0
  [88015f11] + LERC_jll v4.0.1+0
  [89763e89] + Libtiff_jll v4.7.1+0
  [d3a379c0] + LittleCMS_jll v2.16.0+0
  [856f044c] + MKL_jll v2025.0.1+1
  [18a262bb] + OpenEXR_jll v3.2.4+0
  [643b3616] + OpenJpeg_jll v2.5.4+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [b53b4c65] + libpng_jll v1.6.47+0
  [075b6546] + libsixel_jll v1.10.5+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 6.14s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 281.2s


################################################################################
# Testing
#

     Testing Colocalization
      Status `/tmp/jl_jWiNBE/Project.toml`
  [c7e460c6] ArgParse v1.2.0
  [336ed68f] CSV v0.10.15
  [5deedb61] Colocalization v0.2.1
  [a93c6f00] DataFrames v1.7.0
  [31c24e10] Distributions v0.25.118
⌃ [6a3955dd] ImageFiltering v0.7.6
⌅ [787d08f9] ImageMorphology v0.3.2
⌃ [80713f31] ImageSegmentation v1.8.1
⌅ [916415d5] Images v0.25.3
  [e6f89c97] LoggingExtras v1.1.0
  [92933f4c] ProgressMeter v1.10.4
  [295af30f] Revise v3.7.3
  [10745b16] Statistics v1.11.1
  [ade2ca70] Dates v1.11.0
  [56ddb016] Logging v1.11.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_jWiNBE/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
⌅ [79e6a3ab] Adapt v3.7.2
  [66dad0bd] AliasTables v1.1.3
  [c7e460c6] ArgParse v1.2.0
  [ec485272] ArnoldiMethod v0.4.0
⌃ [13072b0f] AxisAlgorithms v1.0.1
  [39de3d68] AxisArrays v0.4.7
  [fa961155] CEnum v0.5.0
  [336ed68f] CSV v0.10.15
  [aafaddc9] CatIndices v0.2.2
  [d360d2e6] ChainRulesCore v1.25.1
  [aaaa29a8] Clustering v0.15.8
  [da1fd8a2] CodeTracking v1.3.9
  [944b1d66] CodecZlib v0.7.8
  [5deedb61] Colocalization v0.2.1
⌃ [35d6a980] ColorSchemes v3.26.0
⌅ [3da002f7] ColorTypes v0.11.5
⌅ [c3611d14] ColorVectorSpace v0.9.10
⌅ [5ae59095] Colors v0.12.11
  [34da2185] Compat v4.16.0
  [ed09eef8] ComputationalResources v0.3.2
  [150eb455] CoordinateTransformations v0.6.4
  [a8cc5b0e] Crayons v4.1.1
  [dc8bdbbb] CustomUnitRanges v1.0.2
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.118
  [ffbed154] DocStringExtensions v0.9.4
  [4f61f5a4] FFTViews v0.3.2
  [7a1cc6ca] FFTW v1.8.1
  [5789e2e9] FileIO v1.17.0
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
  [53c48c17] FixedPointNumbers v0.8.5
  [a2bd30eb] Graphics v1.1.3
  [86223c79] Graphs v1.12.1
  [34004b35] HypergeometricFunctions v0.3.28
⌃ [2803e5a7] ImageAxes v0.6.11
⌃ [c817782e] ImageBase v0.1.5
  [f332f351] ImageContrastAdjustment v0.3.12
⌅ [a09fc81d] ImageCore v0.9.4
  [51556ac3] ImageDistances v0.2.17
⌃ [6a3955dd] ImageFiltering v0.7.6
⌃ [82e4d734] ImageIO v0.6.8
⌃ [6218d12a] ImageMagick v1.2.1
⌃ [bc367c6b] ImageMetadata v0.9.9
⌅ [787d08f9] ImageMorphology v0.3.2
  [2996bd0c] ImageQualityIndexes v0.3.7
⌃ [80713f31] ImageSegmentation v1.8.1
  [4e3cecfd] ImageShow v0.3.8
⌅ [02fcd773] ImageTransformations v0.9.5
⌅ [916415d5] Images v0.25.3
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.5
  [842dd82b] InlineStrings v1.4.3
  [1d092043] IntegralArrays v0.1.6
⌅ [a98d9a8b] Interpolations v0.14.7
  [8197267c] IntervalSets v0.7.10
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] JLD2 v0.4.54
  [692b3bcd] JLLWrappers v1.7.0
  [b835a17e] JpegTurbo v0.1.6
  [aa1ae85d] JuliaInterpreter v0.9.42
  [b964fa9f] LaTeXStrings v1.4.0
  [8cdb02fc] LazyModules v0.3.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.1.0
  [6f1432cf] LoweredCodeUtils v3.1.0
  [1914dd2f] MacroTools v0.5.15
  [dbb5928d] MappedArrays v0.4.2
⌅ [626554b9] MetaGraphs v0.7.2
  [e1d29d7a] Missings v1.2.0
  [e94cdb99] MosaicViews v0.3.4
  [77ba4419] NaNMath v1.1.3
  [b8a86587] NearestNeighbors v0.4.21
  [f09324ee] Netpbm v1.1.1
  [6fe1bfb0] OffsetArrays v1.16.0
  [52e1d378] OpenEXR v0.3.3
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.33
  [f57f5aa1] PNGFiles v0.4.4
  [5432bcbf] PaddedViews v0.5.12
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.1
  [eebad327] PkgVersion v0.3.3
  [2dfb63ee] PooledArrays v1.4.3
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [4b34888f] QOI v1.0.1
  [1fd47b50] QuadGK v2.11.2
  [94ee1d12] Quaternions v0.7.6
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [c1ae055f] RealDot v0.1.0
  [189a3867] Reexport v1.2.2
  [dee08c22] RegionTrees v0.3.2
  [ae029012] Requires v1.3.1
  [295af30f] Revise v3.7.3
  [79098fc4] Rmath v0.8.0
  [6038ab10] Rotations v1.7.1
  [fdea26ae] SIMD v3.7.1
  [91c51154] SentinelArrays v1.4.8
  [699a6c99] SimpleTraits v0.9.4
  [47aef6b3] SimpleWeightedGraphs v1.5.0
  [45858cf5] Sixel v0.1.3
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [cae243ae] StackViews v0.1.1
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.4.0
  [892a3eda] StringManipulation v0.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [62fd8b95] TensorCore v0.1.1
  [b718987f] TextWrap v1.0.2
⌅ [731e570b] TiffImages v0.10.2
⌅ [06e1c1a7] TiledIteration v0.3.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [3a884ed6] UnPack v1.0.2
  [ea10d353] WeakRefStrings v1.4.2
⌅ [efce3f68] WoodburyMatrices v0.5.6
  [76eceee3] WorkerUtilities v1.6.1
  [f5851436] FFTW_jll v3.3.11+0
  [61579ee1] Ghostscript_jll v9.55.0+4
⌅ [c73af94c] ImageMagick_jll v6.9.13+0
  [905a6f67] Imath_jll v3.1.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
  [aacddb02] JpegTurbo_jll v3.1.1+0
  [88015f11] LERC_jll v4.0.1+0
  [89763e89] Libtiff_jll v4.7.1+0
  [d3a379c0] LittleCMS_jll v2.16.0+0
  [856f044c] MKL_jll v2025.0.1+1
  [18a262bb] OpenEXR_jll v3.2.4+0
  [643b3616] OpenJpeg_jll v2.5.4+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [ffd25f8a] XZ_jll v5.8.1+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [b53b4c65] libpng_jll v1.6.47+0
  [075b6546] libsixel_jll v1.10.5+0
  [1317d2d5] oneTBB_jll v2022.0.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...

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┌ Warning: `imhist` will be removed in a future release, please use `build_histogram` instead.
│   caller = otsu_threshold(img::Matrix{Float64}, bins::Int64) at algorithms.jl:140
└ @ Images ~/.julia/packages/Images/Kttvj/src/algorithms.jl:140

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[ Info: Total of 1 objects to compute distance for
[ Info: Total of 1 objects to compute distance for
Test Summary:     | Pass  Total     Time
Colocalization.jl |  280    280  1m36.6s
     Testing Colocalization tests passed 

Testing completed after 237.8s

PkgEval succeeded after 556.55s