Package evaluation of Cclib on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T12:06:01.929


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.89s


################################################################################
# Installation
#

Installing Cclib...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [6bf0c929] + Cclib v0.4.0
    Updating `~/.julia/environments/v1.11/Manifest.toml`
⌅ [a963bdd2] + AtomsBase v0.3.5
  [6bf0c929] + Cclib v0.4.0
  [992eb4ea] + CondaPkg v0.2.27
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [0f8b85d8] + JSON3 v1.14.2
  [1914dd2f] + MacroTools v0.5.15
  [0b3b1443] + MicroMamba v0.1.14
  [bac558e1] + OrderedCollections v1.8.0
  [69de0a69] + Parsers v2.8.1
  [7b2266bf] + PeriodicTable v1.2.1
  [fa939f87] + Pidfile v1.3.0
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [6099a3de] + PythonCall v0.9.24
  [ae029012] + Requires v1.3.1
  [6c6a2e73] + Scratch v1.2.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [1986cc42] + Unitful v1.22.0
  [a7773ee8] + UnitfulAtomic v1.0.0
  [e17b2a0c] + UnsafePointers v1.0.0
  [f8abcde7] + micromamba_jll v1.5.8+0
  [4d7b5844] + pixi_jll v0.41.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 2.55s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 60.4s


################################################################################
# Testing
#

     Testing Cclib
      Status `/tmp/jl_mVND4g/Project.toml`
⌅ [a963bdd2] AtomsBase v0.3.5
  [6bf0c929] Cclib v0.4.0
  [992eb4ea] CondaPkg v0.2.27
  [8bb1440f] DelimitedFiles v1.9.1
  [6099a3de] PythonCall v0.9.24
  [1986cc42] Unitful v1.22.0
  [a7773ee8] UnitfulAtomic v1.0.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_mVND4g/Manifest.toml`
⌅ [a963bdd2] AtomsBase v0.3.5
  [6bf0c929] Cclib v0.4.0
  [992eb4ea] CondaPkg v0.2.27
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [0f8b85d8] JSON3 v1.14.2
  [1914dd2f] MacroTools v0.5.15
  [0b3b1443] MicroMamba v0.1.14
  [bac558e1] OrderedCollections v1.8.0
  [69de0a69] Parsers v2.8.1
  [7b2266bf] PeriodicTable v1.2.1
  [fa939f87] Pidfile v1.3.0
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [6099a3de] PythonCall v0.9.24
  [ae029012] Requires v1.3.1
  [6c6a2e73] Scratch v1.2.1
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [856f2bd8] StructTypes v1.11.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [1986cc42] Unitful v1.22.0
  [a7773ee8] UnitfulAtomic v1.0.0
  [e17b2a0c] UnsafePointers v1.0.0
  [f8abcde7] micromamba_jll v1.5.8+0
  [4d7b5844] pixi_jll v0.41.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
    CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml
    CondaPkg Found dependencies: /home/pkgeval/.julia/packages/Cclib/k8BWz/CondaPkg.toml
    CondaPkg Resolving changes
             + cclib (pip)
             + libstdcxx-ng
             + python
             + uv
    CondaPkg Initialising pixi
             │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
             │ init
             │ --format pixi
             └ /tmp/jl_mVND4g/.CondaPkg
✔ Created /tmp/jl_mVND4g/.CondaPkg/pixi.toml
    CondaPkg Wrote /tmp/jl_mVND4g/.CondaPkg/pixi.toml
             │ [dependencies]
             │ uv = ">=0.4"
             │ libstdcxx-ng = ">=3.4,<13.0"
             │ 
             │     [dependencies.python]
             │     channel = "conda-forge"
             │     build = "*cpython*"
             │     version = ">=3.8,<4"
             │ 
             │ [project]
             │ name = ".CondaPkg"
             │ platforms = ["linux-64"]
             │ channels = ["conda-forge"]
             │ channel-priority = "strict"
             │ description = "automatically generated by CondaPkg.jl"
             │ 
             │ [pypi-dependencies]
             └ cclib = "*"
    CondaPkg Installing packages
             │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
             │ install
             └ --manifest-path /tmp/jl_mVND4g/.CondaPkg/pixi.toml
✔ The default environment has been installed.
/tmp/jl_mVND4g/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/cclib/method/volume.py:14: SyntaxWarning: invalid escape sequence '\p'
  """ In the dictionary sym2powerlist below, each element is a list that contain the combinations of
Unable to determine the type of logfile ['./data/uracil_two.xyz'], try the fallback mechanism
Could not import `openbabel`, fallback mechanism might not work.
Cclib.jl: Error During Test at /home/pkgeval/.julia/packages/Cclib/k8BWz/test/runtests.jl:9
  Got exception outside of a @test
  ArgumentError: Unsupported file format
  Stacktrace:
   [1] ccread(file::String)
     @ Cclib ~/.julia/packages/Cclib/k8BWz/src/functions.jl:109
   [2] macro expansion
     @ ~/.julia/packages/Cclib/k8BWz/test/runtests.jl:11 [inlined]
   [3] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
   [4] top-level scope
     @ ~/.julia/packages/Cclib/k8BWz/test/runtests.jl:10
   [5] include(fname::String)
     @ Main ./sysimg.jl:38
   [6] top-level scope
     @ none:6
   [7] eval
     @ ./boot.jl:430 [inlined]
   [8] exec_options(opts::Base.JLOptions)
     @ Base ./client.jl:296
   [9] _start()
     @ Base ./client.jl:531
  
  caused by: Python: AttributeError: 'NoneType' object has no attribute '__dict__'
  Python stacktrace: none
  Stacktrace:
    [1] pythrow()
      @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:92
    [2] errcheck
      @ ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:10 [inlined]
    [3] pygetattr(x::Py, k::String)
      @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/builtins.jl:62
    [4] getproperty
      @ ~/.julia/packages/PythonCall/WMWY0/src/Core/Py.jl:273 [inlined]
    [5] pyccread(file::String)
      @ Cclib ~/.julia/packages/Cclib/k8BWz/src/functions.jl:9
    [6] get_data(file::String)
      @ Cclib ~/.julia/packages/Cclib/k8BWz/src/functions.jl:15
    [7] ccread(file::String)
      @ Cclib ~/.julia/packages/Cclib/k8BWz/src/functions.jl:105
    [8] macro expansion
      @ ~/.julia/packages/Cclib/k8BWz/test/runtests.jl:11 [inlined]
    [9] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
   [10] top-level scope
      @ ~/.julia/packages/Cclib/k8BWz/test/runtests.jl:10
   [11] include(fname::String)
      @ Main ./sysimg.jl:38
   [12] top-level scope
      @ none:6
   [13] eval
      @ ./boot.jl:430 [inlined]
   [14] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:296
   [15] _start()
      @ Base ./client.jl:531
Test Summary: | Error  Total  Time
Cclib.jl      |     1      1  5.4s
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Cclib/k8BWz/test/runtests.jl:9

Testing failed after 71.75s

ERROR: LoadError: Package Cclib errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 168.85s: package tests unexpectedly errored