Package evaluation of BaytesPMCMC on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T13:52:54.225 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.09s ################################################################################ # Installation # Installing BaytesPMCMC... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [c4a8eb41] + BaytesPMCMC v0.3.3 Updating `~/.julia/environments/v1.11/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [e5a8efeb] + BaytesCore v0.2.0 [12a76ff9] + BaytesDiff v0.3.1 [26b78818] + BaytesFilters v0.3.6 [8e6e46a0] + BaytesMCMC v0.3.4 [c4a8eb41] + BaytesPMCMC v0.3.3 ⌅ [76274a88] + Bijectors v0.13.18 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [9e997f8a] + ChangesOfVariables v0.1.9 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [fdbdab4c] + ElasticArrays v1.2.12 [1a297f60] + FillArrays v1.13.0 ⌅ [d9f16b24] + Functors v0.4.12 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [dbb5928d] + MappedArrays v0.4.2 [e1d29d7a] + Missings v1.2.0 [44c54197] + ModelWrappers v0.5.6 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.7 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 38.7s ################################################################################ # Testing # Testing BaytesPMCMC Status `/tmp/jl_Q65duF/Project.toml` [dce04be8] ArgCheck v2.5.0 [e5a8efeb] BaytesCore v0.2.0 [12a76ff9] BaytesDiff v0.3.1 [26b78818] BaytesFilters v0.3.6 [8e6e46a0] BaytesMCMC v0.3.4 [c4a8eb41] BaytesPMCMC v0.3.3 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 ⌃ [f6369f11] ForwardDiff v0.10.38 [44c54197] ModelWrappers v0.5.6 [ce78b400] SimpleUnPack v1.1.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Q65duF/Manifest.toml` [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [e5a8efeb] BaytesCore v0.2.0 [12a76ff9] BaytesDiff v0.3.1 [26b78818] BaytesFilters v0.3.6 [8e6e46a0] BaytesMCMC v0.3.4 [c4a8eb41] BaytesPMCMC v0.3.3 ⌅ [76274a88] Bijectors v0.13.18 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [9e997f8a] ChangesOfVariables v0.1.9 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [fdbdab4c] ElasticArrays v1.2.12 [1a297f60] FillArrays v1.13.0 ⌃ [f6369f11] ForwardDiff v0.10.38 ⌅ [d9f16b24] Functors v0.4.12 [46192b85] GPUArraysCore v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [dbb5928d] MappedArrays v0.4.2 [e1d29d7a] Missings v1.2.0 [44c54197] ModelWrappers v0.5.6 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling BaytesCore... 2986.9 ms ✓ BaytesCore 1 dependency successfully precompiled in 3 seconds. 6 already precompiled. Precompiling ModelWrappers... 12246.3 ms ✓ ChainRules 12316.7 ms ✓ Bijectors 6419.6 ms ✓ ModelWrappers 3 dependencies successfully precompiled in 33 seconds. 90 already precompiled. Precompiling BaytesMCMC... 5506.0 ms ✓ BaytesDiff 6256.4 ms ✓ BaytesMCMC 2 dependencies successfully precompiled in 13 seconds. 93 already precompiled. Precompiling BaytesFilters... 5957.4 ms ✓ BaytesFilters 1 dependency successfully precompiled in 7 seconds. 94 already precompiled. Precompiling BaytesPMCMC... 5304.5 ms ✓ BaytesPMCMC 1 dependency successfully precompiled in 7 seconds. 97 already precompiled. Precompiling ForwardDiff... 7458.6 ms ✓ ForwardDiff 1 dependency successfully precompiled in 8 seconds. 19 already precompiled. Precompiling RootsForwardDiffExt... 1600.9 ms ✓ Roots → RootsForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 31 already precompiled. Precompiling BijectorsForwardDiffExt... 4185.3 ms ✓ Bijectors → BijectorsForwardDiffExt 1 dependency successfully precompiled in 6 seconds. 97 already precompiled. Precompiling BaytesDiffForwardDiffExt... 4651.2 ms ✓ BaytesDiff → BaytesDiffForwardDiffExt 1 dependency successfully precompiled in 6 seconds. 102 already precompiled. ### Metropolis parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 0.0%. Avg. initial ℓposterior: -2392.01, Avg. final ℓposterior: -2392.01. Metropolis sampler has average (final) stepsize of 0.1 (0.1). Divergences in: Warmup: 0, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1906.68, final ℓlikelihood: -1906.68. Avg. number of used particles: 500.0. Avg. resampling steps: 24.4%. ### NUTS parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 100.0%. Avg. initial ℓposterior: -1656.76, Avg. final ℓposterior: -1656.76. NUTS sampler had 0 divergent transitions. Average (final) stepsize of 0.1 (0.1) with 1.0 (1) number of steps and depth of 1.0 (1). Divergences in: Warmup: 0, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1624.68, final ℓlikelihood: -1624.68. Avg. number of used particles: 500.0. Avg. resampling steps: 18.4%. ### NUTS parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 100.0%. Avg. initial ℓposterior: -1657.66, Avg. final ℓposterior: -1657.66. NUTS sampler had 1 divergent transitions. Average (final) stepsize of 0.1 (0.1) with 2.0 (2) number of steps and depth of 1.0 (1). Divergences in: Warmup: 1, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1624.65, final ℓlikelihood: -1624.65. Avg. number of used particles: 500.0. Avg. resampling steps: 18.6%. ### HMC parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 0.0%. Avg. initial ℓposterior: -1657.81, Avg. final ℓposterior: -1657.81. HMC sampler has average (final) stepsize of 0.1 (0.1) with 10.0 (10) number of steps. Divergences in: Warmup: 1, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1622.01, final ℓlikelihood: -1622.01. Avg. number of used particles: 500.0. Avg. resampling steps: 18.0%. ### HMC parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 0.0%. Avg. initial ℓposterior: -1665.6, Avg. final ℓposterior: -1665.6. HMC sampler has average (final) stepsize of 0.1 (0.1) with 10.0 (10) number of steps. Divergences in: Warmup: 1, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1624.97, final ℓlikelihood: -1624.97. Avg. number of used particles: 500.0. Avg. resampling steps: 18.3%. ### MALA parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 0.0%. Avg. initial ℓposterior: -1663.46, Avg. final ℓposterior: -1663.46. MALA sampler has average (final) stepsize of 0.1 (0.1). Divergences in: Warmup: 1, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1622.39, final ℓlikelihood: -1622.39. Avg. number of used particles: 500.0. Avg. resampling steps: 18.5%. ### MALA parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 0.0%. Avg. initial ℓposterior: -1654.9, Avg. final ℓposterior: -1654.9. MALA sampler has average (final) stepsize of 0.1 (0.1). Divergences in: Warmup: 1, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1624.65, final ℓlikelihood: -1624.65. Avg. number of used particles: 500.0. Avg. resampling steps: 18.0%. ### Custom parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 0.0%. Avg. initial ℓposterior: -1664.35, Avg. final ℓposterior: -1664.35. Divergences in: Warmup: 0, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1620.7, final ℓlikelihood: -1620.7. Avg. number of used particles: 500.0. Avg. resampling steps: 18.5%. ### Custom parameter target: (:μ, :σ, :p) Sampler finished after 1 iterations with acceptance rates of 0.0%. Avg. initial ℓposterior: -1662.59, Avg. final ℓposterior: -1662.59. Divergences in: Warmup: 0, Adaptionˢˡᵒʷ: 0, Adaptionᶠᵃˢᵗ: 0, Exploration: 0. ### ParticleFilter parameter target: (:latent,) Initial ℓlikelihood: -1624.18, final ℓlikelihood: -1624.18. Avg. number of used particles: 500.0. Avg. resampling steps: 18.5%. Test Summary: | Pass Total Time All tests | 63 63 1m08.4s Testing BaytesPMCMC tests passed Testing completed after 182.13s PkgEval succeeded after 243.2s