Package evaluation of BEAST on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T19:27:33.853


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 6.44s


################################################################################
# Installation
#

Installing BEAST...
   Resolving package versions...
   Installed GmshTools ─ v0.5.2
    Updating `~/.julia/environments/v1.11/Project.toml`
  [bb4162c7] + BEAST v2.5.0
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [1520ce14] + AbstractTrees v0.4.5
  [4c555306] + ArrayLayouts v1.11.1
  [bb4162c7] + BEAST v2.5.0
⌅ [8e7c35d0] + BlockArrays v0.16.43
  [5100927d] + ClusterTrees v0.2.1
  [2b5bf9a6] + CollisionDetection v0.1.6
  [861a8166] + Combinatorics v1.0.2
⌅ [3e66a162] + CompScienceMeshes v0.8.3
  [34da2185] + Compat v4.16.0
  [15927181] + ConvolutionOperators v0.4.1
  [864edb3b] + DataStructures v0.18.22
  [8bb1440f] + DelimitedFiles v1.9.1
  [ffbed154] + DocStringExtensions v0.9.4
  [95c220a8] + ExtendableSparse v1.7.1
  [7a1cc6ca] + FFTW v1.8.1
  [442a2c76] + FastGaussQuadrature v1.0.2
  [1a297f60] + FillArrays v1.13.0
  [82e2f556] + GmshTools v0.5.2
  [36aa67b7] + GrundmannMoeller v0.1.2
  [88f59080] + ILUZero v0.2.0
  [5903a43b] + Infiltrator v1.8.7
  [92d709cd] + IrrationalConstants v0.2.4
  [42fd0dbc] + IterativeSolvers v0.9.4
  [692b3bcd] + JLLWrappers v1.7.0
  [d22a30c1] + LiftedMaps v0.5.1
  [7a12625a] + LinearMaps v3.11.4
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [032820ab] + NestedUnitRanges v0.2.1
  [6fe1bfb0] + OffsetArrays v1.16.0
  [bac558e1] + OrderedCollections v1.8.0
  [2ae35dd2] + Permutations v0.4.23
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [0a13313b] + SauterSchwab3D v0.1.4
  [535c7bfe] + SauterSchwabQuadrature v2.4.1
  [164309f2] + ShunnHamQuadrature v0.1.0
  [e56a9233] + Sparspak v0.3.9
  [276daf66] + SpecialFunctions v2.5.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
⌅ [1c621080] + TestItems v0.1.1
  [a3e2863e] + WiltonInts84 v0.2.8
  [6e34b625] + Bzip2_jll v1.0.9+0
  [83423d85] + Cairo_jll v1.18.4+0
  [2e619515] + Expat_jll v2.6.5+0
  [f5851436] + FFTW_jll v3.3.11+0
  [4fce6fc7] + FLTK_jll v1.3.8+0
  [a3f928ae] + Fontconfig_jll v2.16.0+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [bd17208b] + GLU_jll v9.0.1+0
  [78b55507] + Gettext_jll v0.21.0+0
  [7746bdde] + Glib_jll v2.84.0+0
⌅ [0234f1f7] + HDF5_jll v1.14.3+3
  [e33a78d0] + Hwloc_jll v2.12.0+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [aacddb02] + JpegTurbo_jll v3.1.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.7+0
  [dd4b983a] + LZO_jll v2.10.3+0
  [e9f186c6] + Libffi_jll v3.4.7+0
  [d4300ac3] + Libgcrypt_jll v1.11.1+0
  [7e76a0d4] + Libglvnd_jll v1.7.0+0
  [7add5ba3] + Libgpg_error_jll v1.51.1+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.0+0
  [38a345b3] + Libuuid_jll v2.41.0+0
  [18c40d15] + LinearElasticity_jll v5.0.0+0
  [d00139f3] + METIS_jll v5.1.3+0
  [856f044c] + MKL_jll v2025.0.1+1
  [86086c02] + MMG_jll v5.6.0+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [baad4e97] + OCCT_jll v7.7.2+0
⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [30392449] + Pixman_jll v0.44.2+0
⌅ [a8d0f55d] + SCOTCH_jll v6.1.3+0
  [02c8fc9c] + XML2_jll v2.13.6+1
  [aed1982a] + XSLT_jll v1.1.43+0
  [4f6342f7] + Xorg_libX11_jll v1.8.6+3
  [0c0b7dd1] + Xorg_libXau_jll v1.0.12+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.5+0
  [1082639a] + Xorg_libXext_jll v1.3.6+3
  [d091e8ba] + Xorg_libXfixes_jll v6.0.0+0
  [2c808117] + Xorg_libXft_jll v2.3.3+1
  [d1454406] + Xorg_libXinerama_jll v1.1.5+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.11+1
  [14d82f49] + Xorg_libpthread_stubs_jll v0.1.2+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.0+3
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [630162c2] + gmsh_jll v4.13.1+0
  [477f73a3] + libaec_jll v1.1.3+0
  [b53b4c65] + libpng_jll v1.6.47+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [781609d7] + GMP_jll v6.3.0+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [efcefdf7] + PCRE2_jll v10.42.0+1
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building GmshTools → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/299aa66053646db77f8aa7fafcebe0f9e5c0d1dc/build.log`

Installation completed after 18.65s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 22.49s


################################################################################
# Testing
#

     Testing BEAST
┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1920
      Status `/tmp/jl_sVUKWz/Project.toml`
⌃ [bb4162c7] BEAST v2.4.0
⌅ [8e7c35d0] BlockArrays v0.16.43
  [861a8166] Combinatorics v1.0.2
⌅ [3e66a162] CompScienceMeshes v0.7.0
  [8bb1440f] DelimitedFiles v1.9.1
  [535c7bfe] SauterSchwabQuadrature v2.4.1
  [1a9ea918] SphericalScattering v0.7.2
  [90137ffa] StaticArrays v1.9.13
  [f8b46487] TestItemRunner v1.1.0
  [1c621080] TestItems v1.0.0
  [a3e2863e] WiltonInts84 v0.2.8
  [8ba89e20] Distributed v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [44cfe95a] Pkg v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_sVUKWz/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [4c555306] ArrayLayouts v1.11.1
⌃ [bb4162c7] BEAST v2.4.0
⌅ [8e7c35d0] BlockArrays v0.16.43
  [5100927d] ClusterTrees v0.2.1
  [2b5bf9a6] CollisionDetection v0.1.6
  [861a8166] Combinatorics v1.0.2
⌅ [3e66a162] CompScienceMeshes v0.7.0
  [34da2185] Compat v4.16.0
  [15927181] ConvolutionOperators v0.4.1
  [864edb3b] DataStructures v0.18.22
  [8bb1440f] DelimitedFiles v1.9.1
  [ffbed154] DocStringExtensions v0.9.4
  [95c220a8] ExtendableSparse v1.7.1
  [7a1cc6ca] FFTW v1.8.1
  [442a2c76] FastGaussQuadrature v1.0.2
  [1a297f60] FillArrays v1.13.0
  [82e2f556] GmshTools v0.5.2
  [36aa67b7] GrundmannMoeller v0.1.2
  [88f59080] ILUZero v0.2.0
  [92d709cd] IrrationalConstants v0.2.4
  [42fd0dbc] IterativeSolvers v0.9.4
  [692b3bcd] JLLWrappers v1.7.0
  [3db4a2ba] LegendrePolynomials v0.4.5
  [d22a30c1] LiftedMaps v0.5.1
  [7a12625a] LinearMaps v3.11.4
  [2ab3a3ac] LogExpFunctions v0.3.29
  [3da0fdf6] MPIPreferences v0.1.11
  [032820ab] NestedUnitRanges v0.2.1
  [6fe1bfb0] OffsetArrays v1.16.0
  [bac558e1] OrderedCollections v1.8.0
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [0a13313b] SauterSchwab3D v0.1.4
  [535c7bfe] SauterSchwabQuadrature v2.4.1
  [164309f2] ShunnHamQuadrature v0.1.0
  [e56a9233] Sparspak v0.3.9
  [276daf66] SpecialFunctions v2.5.0
  [1a9ea918] SphericalScattering v0.7.2
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [f8b46487] TestItemRunner v1.1.0
  [1c621080] TestItems v1.0.0
  [a3e2863e] WiltonInts84 v0.2.8
  [6e34b625] Bzip2_jll v1.0.9+0
  [83423d85] Cairo_jll v1.18.4+0
  [2e619515] Expat_jll v2.6.5+0
  [f5851436] FFTW_jll v3.3.11+0
  [4fce6fc7] FLTK_jll v1.3.8+0
  [a3f928ae] Fontconfig_jll v2.16.0+0
  [d7e528f0] FreeType2_jll v2.13.4+0
  [bd17208b] GLU_jll v9.0.1+0
  [78b55507] Gettext_jll v0.21.0+0
  [7746bdde] Glib_jll v2.84.0+0
⌅ [0234f1f7] HDF5_jll v1.14.3+3
  [e33a78d0] Hwloc_jll v2.12.0+0
  [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
  [aacddb02] JpegTurbo_jll v3.1.1+0
  [1d63c593] LLVMOpenMP_jll v18.1.7+0
  [dd4b983a] LZO_jll v2.10.3+0
  [e9f186c6] Libffi_jll v3.4.7+0
  [d4300ac3] Libgcrypt_jll v1.11.1+0
  [7e76a0d4] Libglvnd_jll v1.7.0+0
  [7add5ba3] Libgpg_error_jll v1.51.1+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [4b2f31a3] Libmount_jll v2.41.0+0
  [38a345b3] Libuuid_jll v2.41.0+0
  [18c40d15] LinearElasticity_jll v5.0.0+0
  [d00139f3] METIS_jll v5.1.3+0
  [856f044c] MKL_jll v2025.0.1+1
  [86086c02] MMG_jll v5.6.0+0
  [7cb0a576] MPICH_jll v4.3.0+1
  [f1f71cc9] MPItrampoline_jll v5.5.3+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [baad4e97] OCCT_jll v7.7.2+0
⌅ [fe0851c0] OpenMPI_jll v4.1.8+1
  [458c3c95] OpenSSL_jll v3.0.16+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [30392449] Pixman_jll v0.44.2+0
⌅ [a8d0f55d] SCOTCH_jll v6.1.3+0
  [02c8fc9c] XML2_jll v2.13.6+1
  [aed1982a] XSLT_jll v1.1.43+0
  [4f6342f7] Xorg_libX11_jll v1.8.6+3
  [0c0b7dd1] Xorg_libXau_jll v1.0.12+0
  [a3789734] Xorg_libXdmcp_jll v1.1.5+0
  [1082639a] Xorg_libXext_jll v1.3.6+3
  [d091e8ba] Xorg_libXfixes_jll v6.0.0+0
  [2c808117] Xorg_libXft_jll v2.3.3+1
  [d1454406] Xorg_libXinerama_jll v1.1.5+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.11+1
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.2+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.0+3
  [c5fb5394] Xorg_xtrans_jll v1.6.0+0
  [630162c2] gmsh_jll v4.13.1+0
  [477f73a3] libaec_jll v1.1.3+0
  [b53b4c65] libpng_jll v1.6.47+0
  [1317d2d5] oneTBB_jll v2022.0.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
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  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [efcefdf7] PCRE2_jll v10.42.0+1
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling BEAST...
   3284.8 ms  ✓ OpenMPI_jll
   2111.2 ms  ✓ SauterSchwabQuadrature
  10172.1 ms  ✓ CompScienceMeshes
  18312.6 ms  ✓ BEAST
  4 dependencies successfully precompiled in 35 seconds. 136 already precompiled.
dots out of 10: ..
  9.952153 seconds (4.73 M allocations: 240.281 MiB, 0.64% gc time, 99.98% compilation time)
  5.469382 seconds (8.77 M allocations: 451.153 MiB, 2.85% gc time, 99.99% compilation time)
Error During Test at /home/pkgeval/.julia/packages/BEAST/0V7WZ/test/test_basis.jl:25
  Test threw exception
  Expression: rank(I) == numfunctions(X)
  SparseArrays.CHOLMOD.CHOLMODException("dtype=0 not supported")
  Stacktrace:
   [1] SparseArrays.CHOLMOD.Dense{Float32}(ptr::Ptr{SparseArrays.LibSuiteSparse.cholmod_dense_struct})
     @ SparseArrays.CHOLMOD /opt/julia/share/julia/stdlib/v1.11/SparseArrays/src/solvers/cholmod.jl:276
   [2] qr(A::SparseArrays.SparseMatrixCSC{Float32, Int64}; tol::Float64, ordering::Int32)
     @ SparseArrays.SPQR /opt/julia/share/julia/stdlib/v1.11/SparseArrays/src/solvers/spqr.jl:208
   [3] qr
     @ /opt/julia/share/julia/stdlib/v1.11/SparseArrays/src/solvers/spqr.jl:195 [inlined]
   [4] rank(S::SparseArrays.SparseMatrixCSC{Float32, Int64}; tol::Float64)
     @ SparseArrays.SPQR /opt/julia/share/julia/stdlib/v1.11/SparseArrays/src/solvers/spqr.jl:381
   [5] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:676 [inlined]
   [6] top-level scope
     @ ~/.julia/packages/BEAST/0V7WZ/test/test_basis.jl:25
ERROR: LoadError: There was an error during testing
in expression starting at /home/pkgeval/.julia/packages/BEAST/0V7WZ/test/test_basis.jl:9
in expression starting at /home/pkgeval/.julia/packages/BEAST/0V7WZ/test/runtests.jl:5

Testing failed after 112.89s

ERROR: LoadError: Package BEAST errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 171.33s: package tests unexpectedly errored