Package evaluation of AstroChemistry on Julia 1.11.4 (a71dd056e0*) started at 2025-04-09T00:00:06.914


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.68s


################################################################################
# Installation
#

Installing AstroChemistry...
   Resolving package versions...
   Installed HDF5 ─ v0.15.7
    Updating `~/.julia/environments/v1.11/Project.toml`
  [7f947402] + AstroChemistry v0.2.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
⌅ [47edcb42] + ADTypes v0.2.7
⌅ [c3fe647b] + AbstractAlgebra v0.34.7
  [1520ce14] + AbstractTrees v0.4.5
⌅ [79e6a3ab] + Adapt v3.7.2
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
⌅ [4fba245c] + ArrayInterface v6.0.25
  [30b0a656] + ArrayInterfaceCore v0.1.29
  [6ba088a2] + ArrayInterfaceGPUArrays v0.2.2
  [015c0d05] + ArrayInterfaceOffsetArrays v0.1.7
  [b0d46f97] + ArrayInterfaceStaticArrays v0.1.5
  [dd5226c6] + ArrayInterfaceStaticArraysCore v0.1.4
⌃ [4c555306] + ArrayLayouts v0.8.19
  [7f947402] + AstroChemistry v0.2.1
⌅ [aae01518] + BandedMatrices v0.17.18
  [e2ed5e7c] + Bijections v0.1.9
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [a74b3585] + Blosc v0.7.3
⌅ [764a87c0] + BoundaryValueDiffEq v2.11.0
⌅ [fa961155] + CEnum v0.4.2
  [3b1b4be9] + CFITSIO v1.4.2
  [2a0fbf3d] + CPUSummary v0.2.6
  [00ebfdb7] + CSTParser v3.4.3
  [d360d2e6] + ChainRulesCore v1.25.1
⌃ [fb6a15b2] + CloseOpenIntervals v0.1.11
  [861a8166] + Combinatorics v1.0.2
⌅ [a80b9123] + CommonMark v0.8.16
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
⌅ [34da2185] + Compat v3.47.0
  [b152e2b5] + CompositeTypes v0.1.4
⌅ [187b0558] + ConstructionBase v1.5.6
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
⌃ [bcd4f6db] + DelayDiffEq v5.41.1
  [8bb1440f] + DelimitedFiles v1.9.1
⌃ [2b5f629d] + DiffEqBase v6.119.0
⌅ [459566f4] + DiffEqCallbacks v2.26.1
  [5a0ffddc] + DiffEqFinancial v2.6.0
  [c894b116] + DiffEqJump v8.6.3
  [77a26b50] + DiffEqNoiseProcess v5.24.1
  [055956cb] + DiffEqPhysics v3.15.0
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
⌅ [0c46a032] + DifferentialEquations v6.21.0
  [c619ae07] + DimensionalPlotRecipes v1.2.0
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.118
  [ffbed154] + DocStringExtensions v0.9.4
⌅ [5b8099bc] + DomainSets v0.6.7
⌅ [7c1d4256] + DynamicPolynomials v0.5.7
  [4e289a0a] + EnumX v1.0.5
⌃ [d4d017d3] + ExponentialUtilities v1.23.0
  [e2ba6199] + ExprTools v0.1.10
⌅ [525bcba6] + FITSIO v0.16.13
⌅ [7034ab61] + FastBroadcast v0.2.4
  [9aa1b823] + FastClosures v0.3.2
⌅ [29a986be] + FastLapackInterface v1.2.9
⌅ [1a297f60] + FillArrays v0.13.11
⌃ [6a86dc24] + FiniteDiff v2.17.0
  [1fa38f19] + Format v1.3.7
⌅ [f6369f11] + ForwardDiff v0.10.38
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
⌅ [46192b85] + GPUArraysCore v0.1.5
  [c145ed77] + GenericSchur v0.5.4
  [c27321d9] + Glob v1.3.1
  [86223c79] + Graphs v1.12.1
⌅ [0b43b601] + Groebner v0.5.1
⌅ [d5909c97] + GroupsCore v0.4.2
⌅ [f67ccb44] + HDF5 v0.15.7
⌅ [9f4e344d] + Healpix v2.3.0
  [3e5b6fbb] + HostCPUFeatures v0.1.17
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  [82899510] + IteratorInterfaceExtensions v1.0.0
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⌅ [98e50ef6] + JuliaFormatter v1.0.62
⌃ [ccbc3e58] + JumpProcesses v9.5.1
⌅ [ef3ab10e] + KLU v0.4.1
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⌅ [0b1a1467] + KrylovKit v0.6.1
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⌃ [2ee39098] + LabelledArrays v1.13.0
⌅ [984bce1d] + LambertW v0.4.6
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⌃ [10f19ff3] + LayoutPointers v0.1.13
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⌅ [7ed4a6bd] + LinearSolve v1.37.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
⌃ [bdcacae8] + LoopVectorization v0.12.150
  [d8e11817] + MLStyle v0.4.17
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  [e1d29d7a] + Missings v1.2.0
⌅ [961ee093] + ModelingToolkit v8.70.0
  [46d2c3a1] + MuladdMacro v0.2.4
  [f9640e96] + MultiScaleArrays v1.13.0
  [102ac46a] + MultivariatePolynomials v0.5.7
  [d8a4904e] + MutableArithmetics v1.6.4
⌃ [d41bc354] + NLSolversBase v7.8.3
  [2774e3e8] + NLsolve v4.5.1
  [77ba4419] + NaNMath v1.1.3
⌅ [8913a72c] + NonlinearSolve v1.6.0
  [6fe1bfb0] + OffsetArrays v1.16.0
⌃ [429524aa] + Optim v1.11.0
  [bac558e1] + OrderedCollections v1.8.0
⌃ [1dea7af3] + OrdinaryDiffEq v6.44.1
  [90014a1f] + PDMats v0.11.33
⌃ [65888b18] + ParameterizedFunctions v5.16.0
  [d96e819e] + Parameters v0.12.3
  [e409e4f3] + PoissonRandom v0.4.4
⌃ [f517fe37] + Polyester v0.7.2
  [1d0040c9] + PolyesterWeave v0.2.2
  [85a6dd25] + PositiveFactorizations v0.2.4
⌃ [d236fae5] + PreallocationTools v0.4.11
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [27ebfcd6] + Primes v0.5.7
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [74087812] + Random123 v1.7.0
  [fb686558] + RandomExtensions v0.4.4
  [e6cf234a] + RandomNumbers v1.6.0
  [3cdcf5f2] + RecipesBase v1.3.4
⌅ [731186ca] + RecursiveArrayTools v2.37.0
⌃ [f2c3362d] + RecursiveFactorization v0.2.22
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [ae5879a3] + ResettableStacks v1.1.1
  [79098fc4] + Rmath v0.8.0
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.13
  [fdea26ae] + SIMD v3.7.1
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
⌅ [0bca4576] + SciMLBase v1.97.0
  [e9a6253c] + SciMLNLSolve v0.1.9
⌅ [c0aeaf25] + SciMLOperators v0.1.21
  [efcf1570] + Setfield v1.1.2
⌅ [727e6d20] + SimpleNonlinearSolve v0.1.14
  [699a6c99] + SimpleTraits v0.9.4
  [ce78b400] + SimpleUnPack v1.1.0
  [66db9d55] + SnoopPrecompile v1.0.3
  [a2af1166] + SortingAlgorithms v1.2.1
⌅ [47a9eef4] + SparseDiffTools v1.30.0
  [e56a9233] + Sparspak v0.3.9
  [276daf66] + SpecialFunctions v2.5.0
⌅ [aedffcd0] + Static v0.8.10
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.4.0
⌅ [9672c7b4] + SteadyStateDiffEq v1.13.0
⌃ [789caeaf] + StochasticDiffEq v6.58.0
⌅ [7792a7ef] + StrideArraysCore v0.4.7
  [892a3eda] + StringManipulation v0.4.1
⌃ [c3572dad] + Sundials v4.15.1
⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2
⌅ [d1185830] + SymbolicUtils v1.4.0
⌅ [0c5d862f] + Symbolics v5.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [8290d209] + ThreadingUtilities v0.5.2
  [a759f4b9] + TimerOutputs v0.5.28
  [0796e94c] + Tokenize v0.5.29
  [a2a6695c] + TreeViews v0.3.0
⌅ [d5829a12] + TriangularSolve v0.1.21
  [410a4b4d] + Tricks v0.1.10
  [781d530d] + TruncatedStacktraces v1.4.0
  [5c2747f8] + URIs v1.5.2
  [3a884ed6] + UnPack v1.0.2
  [1986cc42] + Unitful v1.22.0
  [a7c27f48] + Unityper v0.1.6
⌃ [3d5dd08c] + VectorizationBase v0.21.58
  [19fa3120] + VertexSafeGraphs v0.2.0
  [700de1a5] + ZygoteRules v0.2.7
  [0b7ba130] + Blosc_jll v1.21.7+0
  [b3e40c51] + CFITSIO_jll v4.4.0+0
⌅ [0234f1f7] + HDF5_jll v1.12.2+2
  [5ced341a] + Lz4_jll v1.10.1+0
⌅ [458c3c95] + OpenSSL_jll v1.1.23+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
⌅ [fb77eaff] + Sundials_jll v5.2.3+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
    Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/698c099c6613d7b7f151832868728f426abe698b/build.log`

Installation completed after 12.8s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 12 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#731 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#816 at ./asyncevent.jl:311
jfptr_YY.816_67229.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x00007a4f7e816ef0 Total snapshots: 257. Utilization: 0%
   ╎257 @Base/asyncevent.jl:311; (::Base.var"#816#817"{FileWatching.Pidfile.var…
   ╎ 257 @Base/asyncevent.jl:145; _trywait(t::Timer)
   ╎  257 @Base/condition.jl:125; wait
   ╎   257 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S…
   ╎    257 @Base/task.jl:1021; wait()
256╎     257 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronize…


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
task_done_hook at ./task.jl:694
jfptr_task_done_hook_66630.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
jl_finish_task at /source/src/task.c:319
start_task at /source/src/task.c:1213
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x00007f468f803530 Total snapshots: 309. Utilization: 0%
   ╎309 @Base/task.jl:694; task_done_hook(t::Task)
   ╎ 309 @Base/task.jl:1021; wait()
308╎  309 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T…


[12] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#731 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#816 at ./asyncevent.jl:311

PkgEval terminated after 2748.57s: test duration exceeded the time limit