Package evaluation of AllenSDK on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T10:44:21.637 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.64s ################################################################################ # Installation # Installing AllenSDK... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [9d22b198] + AllenSDK v0.2.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [9d22b198] + AllenSDK v0.2.0 [992eb4ea] + CondaPkg v0.2.27 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.2 [1914dd2f] + MacroTools v0.5.15 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [fa939f87] + Pidfile v1.3.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.24 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.96s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: AllenSDK Failed to precompile AllenSDK [9d22b198-c11d-497b-9ac7-6add78eade21] to "/home/pkgeval/.julia/compiled/v1.11/AllenSDK/jl_WxXVyK". CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/5o86m/CondaPkg.toml CondaPkg Resolving changes + allensdk (pip) + argschema (pip) + hdmf + libstdcxx-ng + ndx-events (pip) + python + uv + wheel CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_SwJGpY/.CondaPkg ✔ Created /tmp/jl_SwJGpY/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_SwJGpY/.CondaPkg/pixi.toml │ [dependencies] │ uv = ">=0.4" │ libstdcxx-ng = ">=3.4,<13.0" │ hdmf = ">3.6" │ wheel = "*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4, >=3.9,<=3.11" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" │ description = "automatically generated by CondaPkg.jl" │ │ [pypi-dependencies.ndx-events] │ url = "https://github.com/rly/ndx-events/archive/refs/tags/0.2.0.zip" │ │ [pypi-dependencies.allensdk] │ url = "https://github.com/AllenInstitute/AllenSDK/archive/refs/tags/v2.16.2.zip" │ │ [pypi-dependencies.argschema] └ url = "https://github.com/AllenInstitute/argschema/archive/refs/tags/v3.0.1.zip" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_SwJGpY/.CondaPkg/pixi.toml Error: × failed to solve the pypi requirements of 'default' 'linux-64' ├─▶ failed to resolve pypi dependencies ╰─▶ Because allensdk==2.16.2 depends on scipy<1.11 and scipy==1.15.2, we can conclude that allensdk==2.16.2 cannot be used. And because only allensdk==2.16.2 is available and you require allensdk, we can conclude that your requirements are unsatisfiable. ERROR: LoadError: InitError: failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi install --manifest-path /tmp/jl_SwJGpY/.CondaPkg/pixi.toml`,["PYTHON=", "PIXI_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "PATH=/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=/tmp/jl_SwJGpY/Project.toml:/home/pkgeval/.julia/environments/v1.11/Project.toml:/opt/julia/share/julia/stdlib/v1.11", "PKGEVAL=true", "HOME=/home/pkgeval", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "RATTLER_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any) @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:679 [5] _run(io::IO, cmd::Cmd, args::Any) @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:673 [6] (::CondaPkg.var"#70#79"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}})() @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:964 [7] cd(f::CondaPkg.var"#70#79"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}}, dir::String) @ Base.Filesystem ./file.jl:112 [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:904 [9] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:682 [10] envdir() @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/env.jl:70 [11] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:63 [12] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [13] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [16] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [17] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [18] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [19] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [20] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [21] invoke_in_world @ ./essentials.jl:1086 [inlined] [22] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [23] macro expansion @ ./loading.jl:2314 [inlined] [24] macro expansion @ ./lock.jl:273 [inlined] [25] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [26] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [27] invoke_in_world @ ./essentials.jl:1086 [inlined] [28] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [29] include @ ./Base.jl:557 [inlined] [30] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [31] top-level scope @ stdin:6 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 76.02s ################################################################################ # Testing # Testing AllenSDK Status `/tmp/jl_GDfFji/Project.toml` [9d22b198] AllenSDK v0.2.0 [6099a3de] PythonCall v0.9.24 [6c6a2e73] Scratch v1.2.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_GDfFji/Manifest.toml` [9d22b198] AllenSDK v0.2.0 [992eb4ea] CondaPkg v0.2.27 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.2 [1914dd2f] MacroTools v0.5.15 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.24 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [e17b2a0c] UnsafePointers v1.0.0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [83775a58] Zlib_jll v1.2.13+1 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling AllenSDK... Info Given AllenSDK was explicitly requested, output will be shown live   CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/5o86m/CondaPkg.toml  CondaPkg Resolving changes  + allensdk (pip)  + argschema (pip)  + hdmf  + libstdcxx-ng  + ndx-events (pip)  + python  + uv  + wheel  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ init  │ --format pixi  └ /tmp/jl_GDfFji/.CondaPkg ✔ Created /tmp/jl_GDfFji/.CondaPkg/pixi.toml  CondaPkg Wrote /tmp/jl_GDfFji/.CondaPkg/pixi.toml  │ [dependencies]  │ uv = ">=0.4"  │ libstdcxx-ng = ">=3.4,<13.0"  │ hdmf = ">3.6"  │ wheel = "*"  │  │ [dependencies.python]  │ channel = "conda-forge"  │ build = "*cpython*"  │ version = ">=3.8,<4, >=3.9,<=3.11"  │  │ [project]  │ name = ".CondaPkg"  │ platforms = ["linux-64"]  │ channels = ["conda-forge"]  │ channel-priority = "strict"  │ description = "automatically generated by CondaPkg.jl"  │  │ [pypi-dependencies.ndx-events]  │ url = "https://github.com/rly/ndx-events/archive/refs/tags/0.2.0.zip"  │  │ [pypi-dependencies.allensdk]  │ url = "https://github.com/AllenInstitute/AllenSDK/archive/refs/tags/v2.16.2.zip"  │  │ [pypi-dependencies.argschema]  └ url = "https://github.com/AllenInstitute/argschema/archive/refs/tags/v3.0.1.zip"  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ install  └ --manifest-path /tmp/jl_GDfFji/.CondaPkg/pixi.toml Error:  × failed to solve the pypi requirements of 'default' 'linux-64'  ├─▶ failed to resolve pypi dependencies  ╰─▶ Because allensdk==2.16.2 depends on scipy<1.11 and scipy==1.15.2, we can  conclude that allensdk==2.16.2 cannot be used.  And because only allensdk==2.16.2 is available and you require allensdk,  we can conclude that your requirements are unsatisfiable.  ERROR: LoadError: InitError: failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi install --manifest-path /tmp/jl_GDfFji/.CondaPkg/pixi.toml`,["PYTHON=", "PIXI_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "PATH=/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=/tmp/jl_GDfFji/Project.toml", "PKGEVAL=true", "HOME=/home/pkgeval", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "RATTLER_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache"]), ProcessExited(1)) [1]  Stacktrace:  [1] pipeline_error  @ ./process.jl:598 [inlined]  [2] run(::Cmd; wait::Bool)  @ Base ./process.jl:513  [3] run(::Cmd)  @ Base ./process.jl:510  [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any)  @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:679  [5] _run(io::IO, cmd::Cmd, args::Any)  @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:673  [6] (::CondaPkg.var"#70#79"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}})()  @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:964  [7] cd(f::CondaPkg.var"#70#79"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}}, dir::String)  @ Base.Filesystem ./file.jl:112  [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)  @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:904  [9] resolve()  @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:682  [10] envdir()  @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/env.jl:70  [11] init_context()  @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:63  [12] __init__()  @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23  [13] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1378  [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1366  [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)  @ Base ./loading.jl:1254  [16] _include_from_serialized (repeats 2 times)  @ ./loading.jl:1210 [inlined]  [17] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2057  [18] _require(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2527  [19] __require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2388  [20] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [21] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [22] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2375  [23] macro expansion  @ ./loading.jl:2314 [inlined]  [24] macro expansion  @ ./lock.jl:273 [inlined]  [25] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2271  [26] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [27] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [28] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2260  [29] include  @ ./Base.jl:557 [inlined]  [30] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2881  [31] top-level scope  @ stdin:6 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:1 in expression starting at stdin:6 ✗ AllenSDK 0 dependencies successfully precompiled in 26 seconds. 50 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: AllenSDK Failed to precompile AllenSDK [9d22b198-c11d-497b-9ac7-6add78eade21] to "/home/pkgeval/.julia/compiled/v1.11/AllenSDK/jl_YnJ4py". CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/5o86m/CondaPkg.toml CondaPkg Resolving changes + allensdk (pip) + argschema (pip) + hdmf + libstdcxx-ng + ndx-events (pip) + python + uv + wheel CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_GDfFji/.CondaPkg ✔ Created /tmp/jl_GDfFji/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_GDfFji/.CondaPkg/pixi.toml │ [dependencies] │ uv = ">=0.4" │ libstdcxx-ng = ">=3.4,<13.0" │ hdmf = ">3.6" │ wheel = "*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4, >=3.9,<=3.11" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" │ description = "automatically generated by CondaPkg.jl" │ │ [pypi-dependencies.ndx-events] │ url = "https://github.com/rly/ndx-events/archive/refs/tags/0.2.0.zip" │ │ [pypi-dependencies.allensdk] │ url = "https://github.com/AllenInstitute/AllenSDK/archive/refs/tags/v2.16.2.zip" │ │ [pypi-dependencies.argschema] └ url = "https://github.com/AllenInstitute/argschema/archive/refs/tags/v3.0.1.zip" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_GDfFji/.CondaPkg/pixi.toml Error: × failed to solve the pypi requirements of 'default' 'linux-64' ├─▶ failed to resolve pypi dependencies ╰─▶ Because allensdk==2.16.2 depends on scipy<1.11 and scipy==1.15.2, we can conclude that allensdk==2.16.2 cannot be used. And because only allensdk==2.16.2 is available and you require allensdk, we can conclude that your requirements are unsatisfiable. ERROR: LoadError: InitError: failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi install --manifest-path /tmp/jl_GDfFji/.CondaPkg/pixi.toml`,["PYTHON=", "PIXI_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "PATH=/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=/tmp/jl_GDfFji/Project.toml", "PKGEVAL=true", "HOME=/home/pkgeval", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "RATTLER_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any) @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:679 [5] _run(io::IO, cmd::Cmd, args::Any) @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:673 [6] (::CondaPkg.var"#70#79"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}})() @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:964 [7] cd(f::CondaPkg.var"#70#79"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}}, dir::String) @ Base.Filesystem ./file.jl:112 [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:904 [9] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/resolve.jl:682 [10] envdir() @ CondaPkg ~/.julia/packages/CondaPkg/1wHLv/src/env.jl:70 [11] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:63 [12] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [13] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [16] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [17] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [18] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [19] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [20] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [21] invoke_in_world @ ./essentials.jl:1086 [inlined] [22] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [23] macro expansion @ ./loading.jl:2314 [inlined] [24] macro expansion @ ./lock.jl:273 [inlined] [25] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [26] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [27] invoke_in_world @ ./essentials.jl:1086 [inlined] [28] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [29] include @ ./Base.jl:557 [inlined] [30] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [31] top-level scope @ stdin:6 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/AllenSDK/5o86m/test/runtests.jl:1 Testing failed after 30.89s ERROR: LoadError: Package AllenSDK errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 212.96s: package fails to precompile