Package evaluation of AlgebraicDynamics on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T23:19:36.321 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.42s ################################################################################ # Installation # Installing AlgebraicDynamics... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:676 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.21 Updating `~/.julia/environments/v1.11/Project.toml` [5fd6ff03] + AlgebraicDynamics v0.2.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [227ef7b5] + ACSets v0.2.21 ⌅ [79e6a3ab] + Adapt v3.7.2 [5fd6ff03] + AlgebraicDynamics v0.2.2 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [66dad0bd] + AliasTables v1.1.3 ⌃ [4fba245c] + ArrayInterface v7.7.1 [d1d4a3ce] + BitFlags v0.1.9 [134e5e36] + Catlab v0.16.19 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.2 [bbf7d656] + CommonSubexpressions v0.3.1 [0fb5dd42] + 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 12.06s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1055.39s ################################################################################ # Testing # Testing AlgebraicDynamics Status `/tmp/jl_bQ2F8z/Project.toml` [5fd6ff03] AlgebraicDynamics v0.2.2 [4f99eebe] AlgebraicPetri v0.9.2 [134e5e36] Catlab v0.16.19 ⌃ [bcd4f6db] DelayDiffEq v5.45.1 ⌃ [2ee39098] LabelledArrays v1.15.1 ⌃ [1dea7af3] OrdinaryDiffEq v6.66.0 [08abe8d2] PrettyTables v2.4.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_bQ2F8z/Manifest.toml` [227ef7b5] ACSets v0.2.21 ⌅ [47edcb42] ADTypes v0.2.7 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [5fd6ff03] AlgebraicDynamics v0.2.2 [23cfdc9f] AlgebraicInterfaces v0.1.4 [4f99eebe] AlgebraicPetri v0.9.2 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [4c555306] ArrayLayouts v1.11.1 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 [134e5e36] Catlab v0.16.19 [d360d2e6] ChainRulesCore 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time UWDDynam | 55 55 2m14.5s Precompiling LabelledArrays... 4343.9 ms ✓ LabelledArrays 1 dependency successfully precompiled in 6 seconds. 55 already precompiled. Precompiling DelayDiffEq... 3835.9 ms ✓ MaybeInplace 1986.7 ms ✓ FiniteDiff 88421.2 ms ✓ ExponentialUtilities 2112.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1428.1 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 3015.3 ms ✓ LazyArrays → LazyArraysStaticArraysExt 12984.6 ms ✓ VectorizationBase 9247.2 ms ✓ Graphs 23286.7 ms ? SciMLBase 1305.4 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 1140.2 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 2772.3 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 3973.0 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 3420.2 ms ✓ SLEEFPirates 3515.7 ms ✓ VertexSafeGraphs 10675.4 ms ? DiffEqBase 2848.2 ms ✓ NLSolversBase 46842.7 ms ✓ LoopVectorization 9307.6 ms ✓ SparseDiffTools 14610.8 ms ? SimpleNonlinearSolve 5168.8 ms ✓ LineSearches 3324.1 ms ✓ LoopVectorization → SpecialFunctionsExt 14511.5 ms ✓ TriangularSolve 5368.7 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 12752.9 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 49428.3 ms ✓ RecursiveFactorization 12441.9 ms ? LinearSolve 11578.0 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 11812.7 ms ? NonlinearSolve 11980.3 ms ? OrdinaryDiffEq Info Given DelayDiffEq was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 12487.4 ms ? DelayDiffEq 22 dependencies successfully precompiled in 402 seconds. 160 already precompiled. 9 dependencies failed but may be precompilable after restarting julia 9 dependencies had output during precompilation: ┌ LinearSolve → LinearSolveRecursiveArrayToolsExt │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ OrdinaryDiffEq │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DelayDiffEq │ [Output was shown above] └ ┌ LinearSolve │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SciMLBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ NonlinearSolve │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SimpleNonlinearSolve │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling OrdinaryDiffEq... 6175.2 ms ? SciMLBase 10566.2 ms ? DiffEqBase 11172.0 ms ? LinearSolve 12649.0 ms ? SimpleNonlinearSolve 12022.1 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 12955.8 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 11619.4 ms ? NonlinearSolve Info Given OrdinaryDiffEq was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 11706.7 ms ? OrdinaryDiffEq WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling DiffEqBase... 6605.0 ms ? SciMLBase Info Given DiffEqBase was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 13100.8 ms ? DiffEqBase WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling SciMLBase... Info Given SciMLBase was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 6728.9 ms ? SciMLBase WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. WARNING: Method definition isconstant(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:254 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:8. Precompiling SciMLBaseChainRulesCoreExt... 6535.4 ms ? SciMLBase Info Given SciMLBaseChainRulesCoreExt was explicitly requested, output will be shown live  ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 2512.9 ms ? SciMLBase → SciMLBaseChainRulesCoreExt ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling DiffEqBaseGeneralizedGeneratedExt... 6395.5 ms ? SciMLBase 4866.7 ms ? DiffEqBase Info Given DiffEqBaseGeneralizedGeneratedExt was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 1869.6 ms ? DiffEqBase → DiffEqBaseGeneralizedGeneratedExt ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling DiffEqBaseChainRulesCoreExt... 6018.5 ms ? SciMLBase 2491.5 ms ? SciMLBase → SciMLBaseChainRulesCoreExt 4805.4 ms ? DiffEqBase Info Given DiffEqBaseChainRulesCoreExt was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 1884.7 ms ? DiffEqBase → DiffEqBaseChainRulesCoreExt ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling ForwardDiffExt... 3917.6 ms ✓ LoopVectorization → ForwardDiffExt 1 dependency successfully precompiled in 5 seconds. 59 already precompiled. Precompiling LinearSolve... 6060.3 ms ? SciMLBase Info Given LinearSolve was explicitly requested, output will be shown live  ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 5146.3 ms ? LinearSolve 6145.2 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling LinearSolveRecursiveArrayToolsExt... 6642.8 ms ? SciMLBase 5683.2 ms ? LinearSolve Info Given LinearSolveRecursiveArrayToolsExt was explicitly requested, output will be shown live  ┌ Warning: Module LinearSolve with build ID ffffffff-ffff-ffff-0026-85b2ece990c5 is missing from the cache. │ This may mean LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 2048.7 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt ┌ Warning: Module LinearSolve with build ID ffffffff-ffff-ffff-0026-85b2ece990c5 is missing from the cache. │ This may mean LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling SimpleNonlinearSolve... 6234.4 ms ? SciMLBase 4815.4 ms ? DiffEqBase Info Given SimpleNonlinearSolve was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 2587.4 ms ? SimpleNonlinearSolve ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling SimpleNonlinearSolveStaticArraysExt... 6127.9 ms ? SciMLBase 4914.0 ms ? DiffEqBase 2540.9 ms ? SimpleNonlinearSolve Info Given SimpleNonlinearSolveStaticArraysExt was explicitly requested, output will be shown live  ┌ Warning: Module SimpleNonlinearSolve with build ID ffffffff-ffff-ffff-0026-85ce62794704 is missing from the cache. │ This may mean SimpleNonlinearSolve [727e6d20-b764-4bd8-a329-72de5adea6c7] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 1883.2 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt ┌ Warning: Module SimpleNonlinearSolve with build ID ffffffff-ffff-ffff-0026-85ce62794704 is missing from the cache. │ This may mean SimpleNonlinearSolve [727e6d20-b764-4bd8-a329-72de5adea6c7] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling SimpleNonlinearSolveChainRulesCoreExt... 6057.5 ms ? SciMLBase 2590.8 ms ? SciMLBase → SciMLBaseChainRulesCoreExt 4910.6 ms ? DiffEqBase 2052.0 ms ? DiffEqBase → DiffEqBaseChainRulesCoreExt 2694.0 ms ? SimpleNonlinearSolve Info Given SimpleNonlinearSolveChainRulesCoreExt was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 2702.6 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling NonlinearSolve... 2967.7 ms ✓ LazyArrays → LazyArraysStaticArraysExt 6021.6 ms ? SciMLBase 4899.7 ms ? DiffEqBase 5325.7 ms ? LinearSolve 2697.9 ms ? SimpleNonlinearSolve 1910.9 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 1974.7 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt Info Given NonlinearSolve was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 2375.7 ms ? NonlinearSolve 1 dependency successfully precompiled in 33 seconds. 177 already precompiled. 6 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. 7 dependencies failed but may be precompilable after restarting julia 7 dependencies had output during precompilation: ┌ SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt │ ┌ Warning: Module SimpleNonlinearSolve with build ID ffffffff-ffff-ffff-0026-85ce62794704 is missing from the cache. │ │ This may mean SimpleNonlinearSolve [727e6d20-b764-4bd8-a329-72de5adea6c7] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ LinearSolve │ ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ DiffEqBase │ ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ SciMLBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ NonlinearSolve │ [Output was shown above] └ ┌ SimpleNonlinearSolve │ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ LinearSolve → LinearSolveRecursiveArrayToolsExt │ ┌ Warning: Module LinearSolve with build ID ffffffff-ffff-ffff-0026-85b2ece990c5 is missing from the cache. │ │ This may mean LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling CatlabGraphsExt... 12628.2 ms ✓ Catlab → CatlabGraphsExt 1 dependency successfully precompiled in 18 seconds. 85 already precompiled. Precompiling AlgebraicDynamicsOrdinaryDiffEqExt... 6037.7 ms ? SciMLBase 1917.4 ms ✓ Qt6ShaderTools_jll 2462.0 ms ? SciMLBase → SciMLBaseChainRulesCoreExt 4926.8 ms ? DiffEqBase 5400.9 ms ? LinearSolve 1840.4 ms ✓ Qt6Declarative_jll 1910.0 ms ? DiffEqBase → DiffEqBaseChainRulesCoreExt 1881.0 ms ? DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 1887.4 ms ? DiffEqBase → DiffEqBaseUnitfulExt 2523.5 ms ? SimpleNonlinearSolve 1965.5 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 1838.1 ms ✓ Qt6Wayland_jll 2071.8 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 2061.3 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 16211.1 ms ✓ Plots → UnitfulExt 2208.6 ms ? NonlinearSolve 2250.5 ms ? OrdinaryDiffEq Info Given AlgebraicDynamicsOrdinaryDiffEqExt was explicitly requested, output will be shown live  ┌ Warning: Module OrdinaryDiffEq with build ID ffffffff-ffff-ffff-0026-858a583a1876 is missing from the cache. │ This may mean OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 30134.5 ms ? AlgebraicDynamics → AlgebraicDynamicsOrdinaryDiffEqExt 4 dependencies successfully precompiled in 97 seconds. 346 already precompiled. 12 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. 14 dependencies failed but may be precompilable after restarting julia 14 dependencies had output during precompilation: ┌ LinearSolve │ ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ DiffEqBase │ ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ NonlinearSolve │ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ AlgebraicDynamics → AlgebraicDynamicsOrdinaryDiffEqExt │ [Output was shown above] └ ┌ SciMLBase → SciMLBaseChainRulesCoreExt │ ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-85965788ed45 is missing from the cache. │ │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ DiffEqBase → DiffEqBaseGeneralizedGeneratedExt │ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt │ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ DiffEqBase → DiffEqBaseUnitfulExt │ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ LinearSolve → LinearSolveRecursiveArrayToolsExt │ ┌ Warning: Module LinearSolve with build ID ffffffff-ffff-ffff-0026-85b2ece990c5 is missing from the cache. │ │ This may mean LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ DiffEqBase → DiffEqBaseChainRulesCoreExt │ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ OrdinaryDiffEq │ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ SciMLBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt │ ┌ Warning: Module SimpleNonlinearSolve with build ID ffffffff-ffff-ffff-0026-85ce62794704 is missing from the cache. │ │ This may mean SimpleNonlinearSolve [727e6d20-b764-4bd8-a329-72de5adea6c7] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ SimpleNonlinearSolve │ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-85922e1a5a64 is missing from the cache. │ │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ Warning: Module OrdinaryDiffEq with build ID ffffffff-ffff-ffff-0026-858a583a1876 is missing from the cache. │ This may mean OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling AlgebraicDynamicsDelayDiffEqExt... 6270.4 ms ? SciMLBase 2631.0 ms ? SciMLBase → SciMLBaseChainRulesCoreExt 4991.6 ms ? DiffEqBase 5463.6 ms ? LinearSolve 1954.6 ms ? DiffEqBase → DiffEqBaseChainRulesCoreExt 1957.8 ms ? DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 1986.3 ms ? DiffEqBase → DiffEqBaseUnitfulExt 2626.4 ms ? SimpleNonlinearSolve 2059.7 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 1711.7 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 1823.0 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 2301.0 ms ? NonlinearSolve 2242.9 ms ? OrdinaryDiffEq 28673.6 ms ? AlgebraicDynamics → AlgebraicDynamicsOrdinaryDiffEqExt 2065.5 ms ? DelayDiffEq Info Given AlgebraicDynamicsDelayDiffEqExt was explicitly requested, output will be shown live  ┌ Warning: Module DelayDiffEq with build ID ffffffff-ffff-ffff-0026-8571abe69bc5 is missing from the cache. │ This may mean DelayDiffEq [bcd4f6db-9728-5f36-b5f7-82caef46ccdb] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 30747.9 ms ? AlgebraicDynamics → AlgebraicDynamicsDelayDiffEqExt ┌ Warning: Module DelayDiffEq with build ID ffffffff-ffff-ffff-0026-8571abe69bc5 is missing from the cache. │ This may mean DelayDiffEq [bcd4f6db-9728-5f36-b5f7-82caef46ccdb] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Test Summary: | Pass Total Time DWDDynam | 54 54 23m37.6s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 606 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm10DataLayout17getTypeSizeInBitsEPNS_4TypeE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm14MemoryLocation9getOrNoneEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_18EarlyCSE16getMatchingValueERNS0_9LoadValueERNS0_15ParseMemoryInstEj at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_18EarlyCSE11processNodeEPN4llvm15DomTreeNodeBaseINS1_10BasicBlockEEE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_18EarlyCSE3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm12EarlyCSEPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:517 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/src/pipeline.cpp:777 operator() at /source/src/jitlayers.cpp:1298 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1259 [inlined] CallImpl<(anonymous namespace)::OptimizerT<4> > at /source/usr/include/llvm/ADT/FunctionExtras.h:221 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2536 [inlined] jl_compile_method_internal at /source/src/gf.c:2423 _jl_invoke at /source/src/gf.c:2940 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _mapreduce_dim at ./reducedim.jl:337 #mapreduce#926 at ./reducedim.jl:329 [inlined] mapreduce at ./reducedim.jl:329 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subpart_names at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/categorical_algebra/ACSetsGATsInterop.jl:136 subpart at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/categorical_algebra/ACSetsGATsInterop.jl:139 migrate! at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/categorical_algebra/FunctorialDataMigrations.jl:104 unknown function (ip: 0x7596071a8e87) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 migrate! at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/categorical_algebra/FunctorialDataMigrations.jl:114 unknown function (ip: 0x7596071a6195) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 migrate! at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/wiring_diagrams/CPortGraphs.jl:76 migrate! at /home/pkgeval/.julia/packages/AlgebraicDynamics/YqGCZ/src/cpg_dynam.jl:34 unknown function (ip: 0x75960718b9a9) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_invoke at /source/src/gf.c:2955 include at ./sysimg.jl:38 unknown function (ip: 0x7596033d1bb2) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x75961dc94082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x75961ef71249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x7fc360f4a772) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2142 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2082 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1931 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1789 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1898 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x7fc360f40c0d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1845 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1837 unknown function (ip: 0x7fc360f351d6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2063 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x7fc360f34edd) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x7fc360f348cd) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x7fc360f30d76) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:557 jfptr_include_46977.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7fc362189249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007fc354c00010 Total snapshots: 13. Utilization: 0% ╎13 @Base/client.jl:531; _start() ╎ 13 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 13 @Base/Base.jl:557; include(mod::Module, _path::String) ╎ 13 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path:… ╎ 13 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod:… ╎ 13 @Base/boot.jl:430; eval ╎ ╎ 13 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 13 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 13 @Pkg/src/API.jl:147; test ╎ ╎ 13 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 13 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 13 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 13 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 13 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 13 …src/Operations.jl:2007; test ╎ ╎ ╎ 13 …src/Operations.jl:2063; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 13 …rc/Operations.jl:1837; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 13 …rc/Operations.jl:1845; #sandbox#115 ╎ ╎ ╎ ╎ 13 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 13 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 13 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 13 …/Operations.jl:1898; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 13 …/Operations.jl:1789; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 13 …Operations.jl:1931; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 13 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 13 …Operations.jl:2082; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 13 …perations.jl:2142; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 13 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 13 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 13 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 13 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 13 …ase/task.jl:1021; wait() 12╎ ╎ ╎ ╎ ╎ ╎ ╎ 13 …ase/task.jl:1012; poptask(W::Base.Intrus… Test Summary: | Pass [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 [606] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/AlgebraicDynamics/YqGCZ/test/runtests.jl:11 jl_to_typeof at /source/src/julia.h:777 [inlined] ijl_types_equal at /source/src/subtype.c:2276 jl_specializations_get_linfo_ at /source/src/gf.c:222 poptask at ./task.jl:1012 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:3499 jl_restore_package_image_from_stream at /source/src/staticdata.c:3670 jl_restore_incremental_from_buf at /source/src/staticdata.c:3725 ijl_restore_package_image_from_file at /source/src/staticdata.c:3816 wait at ./task.jl:1021 #_include_from_serialized#1082 at ./loading.jl:1245 #wait#731 at ./condition.jl:130 _include_from_serialized at ./loading.jl:1210 [inlined] _include_from_serialized at ./loading.jl:1210 [inlined] #_require_search_from_serialized#1105 at ./loading.jl:2057 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 _require_search_from_serialized at ./loading.jl:1969 [inlined] macro expansion at ./loading.jl:2683 [inlined] macro expansion at ./lock.jl:273 [inlined] require_stdlib at ./loading.jl:2648 profile_printing_listener at ./Base.jl:577 require_stdlib at ./loading.jl:2644 [inlined] macro expansion at ./some.jl:158 [inlined] profile_printing_listener at ./Base.jl:578 #1190 at ./Base.jl:617 #1190 at ./Base.jl:617 jfptr_YY.1190_76096.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 26054545 (Pool: 26053338; Big: 1207); GC: 29 jfptr_YY.1190_76096.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 338919017 (Pool: 338908652; Big: 10365); GC: 155 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:35 #schedule#761 at ./task.jl:884 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jfptr_uv_writecb_task_67080.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jlcapi_uv_writecb_task_67543.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 Total Time CPGDynam | 71 71 54.7s wait at ./task.jl:1021 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 showerror at ./errorshow.jl:152 unknown function (ip: 0x7fc360f4ce96) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _atexit at ./initdefs.jl:462 jfptr__atexit_69596.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2723.47s: test duration exceeded the time limit