Package evaluation of AdFem on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T15:31:35.402 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.19s ################################################################################ # Installation # Installing AdFem... Resolving package versions... Installed CMake ── v1.2.0 Installed Conda ── v1.10.2 Installed PyCall ─ v1.96.4 Installed HDF5 ─── v0.13.6 Installed ADCME ── v0.6.7 Installed AdFem ── v0.1.1 Updating `~/.julia/environments/v1.11/Project.toml` [c10abcb9] + AdFem v0.1.1 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [07b341a0] + ADCME v0.6.7 [621f4979] + AbstractFFTs v1.5.0 [c10abcb9] + AdFem v0.1.1 [9e28174c] + BinDeps v1.0.2 [a74b3585] + Blosc v0.7.3 [e1450e63] + BufferedStreams v1.2.2 [631607c0] + CMake v1.2.0 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [5ae59095] + Colors v0.12.11 [8f4d0f93] + Conda v1.10.2 [7a1cc6ca] + FFTW v1.8.1 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f67ccb44] + HDF5 v0.13.6 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [23992714] + MAT v0.8.1 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [bac558e1] + OrderedCollections v1.8.0 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [438e738f] + PyCall v1.96.4 [d330b81b] + PyPlot v2.11.6 ⌅ [189a3867] + Reexport v0.2.0 ⌅ [276daf66] + SpecialFunctions v0.10.3 [10745b16] + Statistics v1.11.1 [3bb67fe8] + TranscodingStreams v0.11.3 [30578b45] + URIParser v0.4.1 [3a884ed6] + UnPack v1.0.2 [81def892] + VersionParsing v1.3.0 [0b7ba130] + Blosc_jll v1.21.7+0 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+2 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building CMake ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/50a8b41d2c562fccd9ab841085fc7d1e2706da82/build.log` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building HDF5 ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0713cbabdf855852dfab3ce6447c87145f3d9ea8/build.log` Building ADCME ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0da04753658d14abee2062cee67209eb12e62df3/build.log` Building AdFem ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/de766a129f0ef5ca65af57e4e2b5bbac6d212f86/build.log` Installation failed after 1851.89s ERROR: LoadError: Error building `AdFem`: WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/variable.jl:214. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. OMP: Info #212: KMP_AFFINITY: decoding x2APIC ids. OMP: Info #210: KMP_AFFINITY: Affinity capable, using global cpuid leaf 11 info OMP: Info #154: KMP_AFFINITY: Initial OS proc set respected: 120 OMP: Info #156: KMP_AFFINITY: 1 available OS procs OMP: Info #157: KMP_AFFINITY: Uniform topology OMP: Info #159: KMP_AFFINITY: 1 packages x 1 cores/pkg x 1 threads/core (1 total cores) OMP: Info #214: KMP_AFFINITY: OS proc to physical thread map: OMP: Info #171: KMP_AFFINITY: OS proc 120 maps to package 1 OMP: Info #250: KMP_AFFINITY: pid 10544 tid 10544 thread 0 bound to OS proc set 120 -- The C compiler identification is GNU 5.4.0 -- The CXX compiler identification is GNU 5.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /home/pkgeval/.julia/adcme/bin/x86_64-conda_cos6-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /home/pkgeval/.julia/adcme/bin/x86_64-conda_cos6-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done JULIA=/opt/julia/bin/julia Precompiling ADCME... 1381.3 ms ✓ Lz4_jll 566.0 ms ✓ Reexport 3639.5 ms ✓ SpecialFunctions 1270.5 ms ✓ Blosc_jll 40626.2 ms ✓ FFTW 1138.4 ms ✓ Blosc 13757.0 ms ✓ HDF5 5723.0 ms ✓ MAT Info Given ADCME was explicitly requested, output will be shown live  WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/variable.jl:214. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 5952.1 ms ? ADCME 8 dependencies successfully precompiled in 75 seconds. 62 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ ADCME │ [Output was shown above] └ WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/variable.jl:214. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. OMP: Info #212: KMP_AFFINITY: decoding x2APIC ids. OMP: Info #210: KMP_AFFINITY: Affinity capable, using global cpuid leaf 11 info OMP: Info #154: KMP_AFFINITY: Initial OS proc set respected: 120 OMP: Info #156: KMP_AFFINITY: 1 available OS procs OMP: Info #157: KMP_AFFINITY: Uniform topology OMP: Info #159: KMP_AFFINITY: 1 packages x 1 cores/pkg x 1 threads/core (1 total cores) OMP: Info #214: KMP_AFFINITY: OS proc to physical thread map: OMP: Info #171: KMP_AFFINITY: OS proc 120 maps to package 1 OMP: Info #250: KMP_AFFINITY: pid 10652 tid 10652 thread 0 bound to OS proc set 120 ┌ Warning: Cannot load /home/pkgeval/.julia/packages/ADCME/hCmEo/deps/CustomOps/build/libadcme.so. Please recompile the shared library by `ADCME.precompile()` for using custom operators. └ @ ADCME ~/.julia/packages/ADCME/hCmEo/src/ADCME.jl:76 Python path=/home/pkgeval/.julia/adcme/bin/python PREFIXDIR=/home/pkgeval/.julia/adcme/lib/Libraries TF_INC=/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/tensorflow_core/include TF_ABI=1 TF_LIB_FILE=/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/tensorflow_core/libtensorflow_framework.so.1 Use openblas library /home/pkgeval/.julia/adcme/lib/libopenblas.so -- Configuring done -- Generating done -- Build files have been written to: /home/pkgeval/.julia/adcme/lib/Libraries/Adept-2/adept/build [1/12] Building CXX object CMakeFiles/adept.dir/StackStorageOrig.cpp.o [2/12] Building CXX object CMakeFiles/adept.dir/cppblas.cpp.o [3/12] Building CXX object CMakeFiles/adept.dir/settings.cpp.o [4/12] Building CXX object CMakeFiles/adept.dir/Storage.cpp.o [5/12] Building CXX object CMakeFiles/adept.dir/index.cpp.o [6/12] Building CXX object 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-- (optional) USER_CONFIG = /home/pkgeval/.julia/adcme/lib/Libraries/mfem-shared-msvc-dev/config/user.cmake -- CMake Version: 3.18.0 -- USE_XSDK_DEFAULTS = 'OFF' -- The CXX compiler identification is GNU 5.4.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /home/pkgeval/.julia/adcme/bin/x86_64-conda_cos6-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for POSIXClocks ... -- checking library: -- checking library: rt -- Found POSIXClocks: rt -- MFEM: using package POSIXCLOCKS -- MFEM build type: CMAKE_BUILD_TYPE = Release -- MFEM version: v4.1.1 -- MFEM git string: (unknown) -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- 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/home/pkgeval/.julia/adcme/bin/x86_64-conda_cos6-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /home/pkgeval/.julia/adcme/bin/x86_64-conda_cos6-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done JULIA=/opt/julia/bin/julia Precompiling ADCME... Info Given ADCME was explicitly requested, output will be shown live  WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/variable.jl:214. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 5666.9 ms ? ADCME WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/variable.jl:214. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. OMP: Info #212: KMP_AFFINITY: decoding x2APIC ids. OMP: Info #210: KMP_AFFINITY: Affinity capable, using global cpuid leaf 11 info OMP: Info #154: KMP_AFFINITY: Initial OS proc set respected: 120 OMP: Info #156: KMP_AFFINITY: 1 available OS procs OMP: Info #157: KMP_AFFINITY: Uniform topology OMP: Info #159: KMP_AFFINITY: 1 packages x 1 cores/pkg x 1 threads/core (1 total cores) OMP: Info #214: KMP_AFFINITY: OS proc to physical thread map: OMP: Info #171: KMP_AFFINITY: OS proc 120 maps to package 1 OMP: Info #250: KMP_AFFINITY: pid 11257 tid 11257 thread 0 bound to OS proc set 120 ┌ Warning: Cannot load /home/pkgeval/.julia/packages/ADCME/hCmEo/deps/CustomOps/build/libadcme.so. Please recompile the shared library by `ADCME.precompile()` for using custom operators. └ @ ADCME ~/.julia/packages/ADCME/hCmEo/src/ADCME.jl:76 Python path=/home/pkgeval/.julia/adcme/bin/python EIGEN_INC= TF_INC=/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/tensorflow_core/include TF_ABI=1 TF_LIB_FILE=/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/tensorflow_core/libtensorflow_framework.so.1 ADEPT_LIB_FILE=/home/pkgeval/.julia/adcme/lib/libadept.so -- Configuring done -- Generating done -- Build files have been written to: /home/pkgeval/.julia/packages/AdFem/UvDr4/deps/build [1/25] Building CXX object CMakeFiles/adfem.dir/CholeskyOp/CholeskyOp.cpp.o FAILED: CMakeFiles/adfem.dir/CholeskyOp/CholeskyOp.cpp.o /home/pkgeval/.julia/adcme/bin/x86_64-conda_cos6-linux-gnu-g++ -Dadfem_EXPORTS -I/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/tensorflow_core/include -I/home/pkgeval/.julia/adcme/lib/Libraries -I/home/pkgeval/.julia/adcme/lib/../include -I/home/pkgeval/.julia/adcme/lib/Libraries/had -I/home/pkgeval/.julia/adcme/lib/Adept-2/include -D_GLIBCXX_USE_CXX11_ABI=1 -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT CMakeFiles/adfem.dir/CholeskyOp/CholeskyOp.cpp.o -MF CMakeFiles/adfem.dir/CholeskyOp/CholeskyOp.cpp.o.d -o CMakeFiles/adfem.dir/CholeskyOp/CholeskyOp.cpp.o -c ../CholeskyOp/CholeskyOp.cpp In file included from ../CholeskyOp/CholeskyOp.cpp:11:0: ../CholeskyOp/CholeskyOp.h:1:19: fatal error: adept.h: No such file or directory compilation terminated. [2/25] Building CXX object CMakeFiles/adfem.dir/SpatialVaryingTangentElastic/SpatialVaryingTangentElastic.cpp.o [3/25] Building CXX object CMakeFiles/adfem.dir/Advection/Advection.cpp.o [4/25] Building CXX object CMakeFiles/adfem.dir/FemSource/FemSource.cpp.o [5/25] Building CXX object CMakeFiles/adfem.dir/ComputeVel/ComputeVel.cpp.o [6/25] Building CXX object CMakeFiles/adfem.dir/FemToGaussPoints/FemToGaussPoints.cpp.o [7/25] Building CXX object CMakeFiles/adfem.dir/FemGrad/FemGrad.cpp.o [8/25] Building CXX object CMakeFiles/adfem.dir/Strain1/StrainOpUnivariate.cpp.o [9/25] Building CXX object CMakeFiles/adfem.dir/Strain/StrainOp.cpp.o [10/25] Building CXX object CMakeFiles/adfem.dir/ImplicitAdvection/ImplicitAdvection.cpp.o [11/25] Building CXX object CMakeFiles/adfem.dir/DirichletBd/DirichletBd.cpp.o [12/25] Building CXX object CMakeFiles/adfem.dir/TpfaOp/TpfaOp.cpp.o [13/25] Building CXX object CMakeFiles/adfem.dir/StrainEnergy1/StrainEnergyUnivariate.cpp.o [14/25] Building CXX object CMakeFiles/adfem.dir/StrainEnergy/StrainEnergy.cpp.o [15/25] Building CXX object CMakeFiles/adfem.dir/VolumetricStrain/VolumetricStrain.cpp.o [16/25] Building CXX object CMakeFiles/adfem.dir/FemStiffness1/UnivariateFemStiffness.cpp.o [17/25] Building CXX object CMakeFiles/adfem.dir/FemMass/FemMass.cpp.o [18/25] Building CXX object CMakeFiles/adfem.dir/FemStiffness/FemStiffness.cpp.o [19/25] Building CXX object CMakeFiles/adfem.dir/SpatialFemStiffness/SpatialFemStiffness.cpp.o [20/25] Building CXX object CMakeFiles/adfem.dir/FemAdvection/FemAdvection.cpp.o ninja: build stopped: subcommand failed. Precompiling ADCME... 652.1 ms ✓ Reexport 2704.2 ms ✓ Blosc_jll 28973.0 ms ✓ FFTW 1197.7 ms ✓ Blosc 12090.6 ms ✓ HDF5 6658.4 ms ✓ MAT Info Given ADCME was explicitly requested, output will be shown live  WARNING: method definition for #newton_raphson#42 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:453 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#50 at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:607 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/optim.jl:681 declares type variable T but does not use it. WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/hCmEo/src/variable.jl:214. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 6653.6 ms ? ADCME 6 dependencies successfully precompiled in 60 seconds. 64 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ ADCME │ [Output was shown above] └ ┌ Warning: Cannot load /home/pkgeval/.julia/packages/ADCME/hCmEo/deps/CustomOps/build/libadcme.so. Please recompile the shared library by `ADCME.precompile()` for using custom operators. └ @ ADCME ~/.julia/packages/ADCME/hCmEo/src/ADCME.jl:76 [ Info: Changed to directory /home/pkgeval/.julia/adcme/lib/Libraries [ Info: Cloning from https://github.com/ADCMEMarket/Adept-2 to Adept-2... [ Info: Cloned https://github.com/ADCMEMarket/Adept-2 to Adept-2 [ Info: Made directory directory [ Info: Changed to directory build [ Info: Changed to directory /home/pkgeval/.julia/adcme/lib/Libraries [ Info: Downloading https://github.com/kailaix/mfem/archive/shared-msvc-dev.zip -> mfem.zip [ Info: Downloaded mfem.zip from https://github.com/kailaix/mfem/archive/shared-msvc-dev.zip. [ Info: Made directory directory [ Info: Changed to directory mfem-shared-msvc-dev/build [ Info: Changed to directory /home/pkgeval/.julia/adcme/lib/Libraries [ Info: Cloning from https://github.com/kailaix/had to had... [ Info: Cloned https://github.com/kailaix/had to had [ Info: Made directory directory [ Info: Changed to directory /home/pkgeval/.julia/packages/AdFem/UvDr4/deps/build ERROR: LoadError: failed process: Process(setenv(`/home/pkgeval/.julia/adcme/bin/ninja -j20`,["PYTHON=", "HDF5_USE_FILE_LOCKING=FALSE", "PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "KMP_AFFINITY=granularity=fine,verbose,compact,1,0", "DISPLAY=:1", "__KMP_REGISTERED_LIB_10544=0x72423c3ccd08-cafe7205-libiomp5.so", "LD_LIBRARY_PATH=/home/pkgeval/.julia/adcme/lib:/home/pkgeval/.julia/adcme/lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*" … "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=@:/tmp/jl_2VNH24", "PKGEVAL=true", "KMP_BLOCKTIME=0", "JULIA_PKG_PRECOMPILE_AUTO=0", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run @ ./process.jl:510 [inlined] [4] make() @ ADCME ~/.julia/packages/ADCME/hCmEo/src/extra.jl:99 [5] #3 @ ~/.julia/packages/AdFem/UvDr4/deps/build.jl:12 [inlined] [6] require_library(func::var"#3#4", filename::String) @ ADCME ~/.julia/packages/ADCME/hCmEo/src/toolchain.jl:212 [7] top-level scope @ ~/.julia/packages/AdFem/UvDr4/deps/build.jl:11 [8] include(fname::String) @ Main ./sysimg.jl:38 [9] top-level scope @ none:5 in expression starting at /home/pkgeval/.julia/packages/AdFem/UvDr4/deps/build.jl:11 Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] (::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1191 [3] withenv(::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}}) @ Base ./env.jl:265 [4] (::Pkg.Operations.var"#118#123"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1931 [5] with_temp_env(fn::Pkg.Operations.var"#118#123"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1789 [6] (::Pkg.Operations.var"#116#121"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1898 [7] mktempdir(fn::Pkg.Operations.var"#116#121"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:819 [8] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:815 [9] mktempdir @ ./file.jl:815 [inlined] [10] #sandbox#115 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1845 [inlined] [11] build_versions(ctx::Pkg.Types.Context, uuids::Set{UUID}; verbose::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1172 [12] build_versions @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1090 [inlined] [13] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{UUID}; allow_autoprecomp::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1468 [14] add @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1414 [inlined] [15] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol, allow_autoprecomp::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:312 [16] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [17] add(pkgs::Vector{Pkg.Types.PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 [18] add(pkg::Pkg.Types.PackageSpec) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [19] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:112 in expression starting at /PkgEval.jl/scripts/evaluate.jl:109 PkgEval skipped after 1912.04s: package could not be installed