Package evaluation of ADCMEKit on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T15:16:06.657 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.15s ################################################################################ # Installation # Installing ADCMEKit... Resolving package versions... Installed Conda ──── v1.10.2 Installed CMake ──── v1.2.0 Installed PyCall ─── v1.96.4 Installed HDF5 ───── v0.13.6 Installed ADCMEKit ─ v0.2.3 Installed ADCME ──── v0.5.13 Updating `~/.julia/environments/v1.11/Project.toml` [b6719975] + ADCMEKit v0.2.3 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [07b341a0] + ADCME v0.5.13 [b6719975] + ADCMEKit v0.2.3 [621f4979] + AbstractFFTs v1.5.0 [9e28174c] + BinDeps v1.0.2 [a74b3585] + Blosc v0.7.3 [e1450e63] + BufferedStreams v1.2.2 [631607c0] + CMake v1.2.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.0 [8f4d0f93] + Conda v1.10.2 [7a1cc6ca] + FFTW v1.8.1 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f67ccb44] + HDF5 v0.13.6 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [23992714] + MAT v0.8.1 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [69de0a69] + Parsers v2.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [438e738f] + PyCall v1.96.4 [d330b81b] + PyPlot v2.11.6 [189a3867] + Reexport v1.2.2 ⌅ [276daf66] + SpecialFunctions v0.10.3 [10745b16] + Statistics v1.11.1 [3bb67fe8] + TranscodingStreams v0.11.3 [30578b45] + URIParser v0.4.1 [81def892] + VersionParsing v1.3.0 [0b7ba130] + Blosc_jll v1.21.7+0 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+2 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building CMake ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/50a8b41d2c562fccd9ab841085fc7d1e2706da82/build.log` Building Conda ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building HDF5 ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0713cbabdf855852dfab3ce6447c87145f3d9ea8/build.log` Building ADCME ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/aec60a2a458732aa0bd3e518b3f5a0d741b4c9ad/build.log` Installation failed after 249.32s ERROR: LoadError: Error building `ADCME`: PREFIX=/home/pkgeval/.julia/adcme Unpacking payload ... 0%| | 0/35 [00:00>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<< Traceback (most recent call last): File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/urllib3/response.py", line 685, in _update_chunk_length self.chunk_left = int(line, 16) ValueError: invalid literal for int() with base 16: b'' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/urllib3/response.py", line 425, in _error_catcher yield File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/urllib3/response.py", line 752, in read_chunked self._update_chunk_length() File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/urllib3/response.py", line 689, in _update_chunk_length raise httplib.IncompleteRead(line) http.client.IncompleteRead: IncompleteRead(0 bytes read) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/requests/models.py", line 751, in generate for chunk in self.raw.stream(chunk_size, decode_content=True): File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/urllib3/response.py", line 560, in stream for line in self.read_chunked(amt, decode_content=decode_content): File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/urllib3/response.py", line 781, in read_chunked self._original_response.close() File "/home/pkgeval/.julia/adcme/lib/python3.7/contextlib.py", line 130, in __exit__ self.gen.throw(type, value, traceback) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/urllib3/response.py", line 443, in _error_catcher raise ProtocolError("Connection broken: %r" % e, e) urllib3.exceptions.ProtocolError: ('Connection broken: IncompleteRead(0 bytes read)', IncompleteRead(0 bytes read)) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/exceptions.py", line 1079, in __call__ return func(*args, **kwargs) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda_env/cli/main.py", line 80, in do_call exit_code = getattr(module, func_name)(args, parser) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda_env/cli/main_update.py", line 124, in execute result[installer_type] = installer.install(prefix, specs, args, env) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda_env/installers/conda.py", line 32, in install prune=getattr(args, 'prune', False), update_modifier=UpdateModifier.FREEZE_INSTALLED) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/solve.py", line 117, in solve_for_transaction should_retry_solve) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/solve.py", line 158, in solve_for_diff force_remove, should_retry_solve) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/solve.py", line 262, in solve_final_state ssc = self._collect_all_metadata(ssc) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated return f(*args, **kwds) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/solve.py", line 415, in _collect_all_metadata index, r = self._prepare(prepared_specs) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/solve.py", line 1011, in _prepare self.subdirs, prepared_specs, self._repodata_fn) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/index.py", line 228, in get_reduced_index repodata_fn=repodata_fn) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/subdir_data.py", line 105, in query_all result = tuple(concat(executor.map(subdir_query, channel_urls))) File "/home/pkgeval/.julia/adcme/lib/python3.7/concurrent/futures/_base.py", line 598, in result_iterator yield fs.pop().result() File "/home/pkgeval/.julia/adcme/lib/python3.7/concurrent/futures/_base.py", line 428, in result return self.__get_result() File "/home/pkgeval/.julia/adcme/lib/python3.7/concurrent/futures/_base.py", line 384, in __get_result raise self._exception File "/home/pkgeval/.julia/adcme/lib/python3.7/concurrent/futures/thread.py", line 57, in run result = self.fn(*self.args, **self.kwargs) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/subdir_data.py", line 98, in package_ref_or_match_spec)) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/subdir_data.py", line 110, in query self.load() File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/subdir_data.py", line 174, in load _internal_state = self._load() File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/subdir_data.py", line 248, in _load repodata_fn=self.repodata_fn) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/conda/core/subdir_data.py", line 485, in fetch_repodata_remote_request timeout=timeout) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/requests/sessions.py", line 543, in get return self.request('GET', url, **kwargs) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/requests/sessions.py", line 530, in request resp = self.send(prep, **send_kwargs) File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/requests/sessions.py", line 683, in send r.content File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/requests/models.py", line 829, in content self._content = b''.join(self.iter_content(CONTENT_CHUNK_SIZE)) or b'' File "/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/requests/models.py", line 754, in generate raise ChunkedEncodingError(e) requests.exceptions.ChunkedEncodingError: ('Connection broken: IncompleteRead(0 bytes read)', IncompleteRead(0 bytes read)) `$ /home/pkgeval/.julia/adcme/bin/conda-env update -n base --file linux.yml` environment variables: CIO_TEST= CONDA_AUTO_UPDATE_CONDA=false CONDA_ROOT=/home/pkgeval/.julia/adcme JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia: JULIA_LOAD_PATH=@:/tmp/jl_F5D2db PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin PYTHON= REQUESTS_CA_BUNDLE= SSL_CERT_FILE= active environment : None user config file : /home/pkgeval/.condarc populated config files : conda version : 4.8.3 conda-build version : not installed python version : 3.7.7.final.0 virtual packages : __glibc=2.36 base environment : /home/pkgeval/.julia/adcme (writable) channel URLs : https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /home/pkgeval/.julia/adcme/pkgs /home/pkgeval/.conda/pkgs envs directories : /home/pkgeval/.julia/adcme/envs /home/pkgeval/.conda/envs platform : linux-64 user-agent : conda/4.8.3 requests/2.23.0 CPython/3.7.7 Linux/6.8.0-49-generic debian/12 glibc/2.36 UID:GID : 1000:1000 netrc file : None offline mode : False An unexpected error has occurred. Conda has prepared the above report. ┌ Warning: Pkg.installed() is deprecated └ @ Pkg /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Pkg.jl:785 ┌ Warning: Pkg.installed() is deprecated └ @ Pkg /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Pkg.jl:785 [ Info: Your Julia version is 1.11.4, current ADCME version is 0.5.13, ADCME dependencies installation path: /home/pkgeval/.julia/adcme [ Info: --------------- (1/6) Install Tensorflow Dependencies --------------- [ Info: Downloading miniconda installer... [ Info: Installing miniconda... ERROR: LoadError: failed process: Process(setenv(`/home/pkgeval/.julia/adcme/bin/conda env update -n base --file linux.yml`,["PYTHON=", "LANG=C.UTF-8", "PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "OPENBLAS_MAIN_FREE=1", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "DISPLAY=:1", "JULIA_LOAD_PATH=@:/tmp/jl_F5D2db", "PKGEVAL=true", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "R_HOME=*", "HOME=/home/pkgeval"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] top-level scope @ ~/.julia/packages/ADCME/JzSON/deps/install_adcme.jl:66 [5] include(fname::String) @ Main ./sysimg.jl:38 [6] top-level scope @ ~/.julia/packages/ADCME/JzSON/deps/build.jl:55 [7] include(fname::String) @ Main ./sysimg.jl:38 [8] top-level scope @ none:5 in expression starting at /home/pkgeval/.julia/packages/ADCME/JzSON/deps/install_adcme.jl:19 in expression starting at /home/pkgeval/.julia/packages/ADCME/JzSON/deps/build.jl:55 Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] (::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1191 [3] withenv(::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}}) @ Base ./env.jl:265 [4] (::Pkg.Operations.var"#118#123"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1931 [5] with_temp_env(fn::Pkg.Operations.var"#118#123"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1789 [6] (::Pkg.Operations.var"#116#121"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1898 [7] mktempdir(fn::Pkg.Operations.var"#116#121"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:819 [8] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:815 [9] mktempdir @ ./file.jl:815 [inlined] [10] #sandbox#115 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1845 [inlined] [11] build_versions(ctx::Pkg.Types.Context, uuids::Set{UUID}; verbose::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1172 [12] build_versions @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1090 [inlined] [13] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{UUID}; allow_autoprecomp::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1468 [14] add @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1414 [inlined] [15] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol, allow_autoprecomp::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:312 [16] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [17] add(pkgs::Vector{Pkg.Types.PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 [18] add(pkg::Pkg.Types.PackageSpec) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [19] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:112 in expression starting at /PkgEval.jl/scripts/evaluate.jl:109 PkgEval skipped after 297.95s: package could not be installed