Package evaluation of eQuilibrator on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T17:07:09.690


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.04s


################################################################################
# Installation
#

Installing eQuilibrator...
   Resolving package versions...
   Installed Conda ── v1.10.2
   Installed PyCall ─ v1.96.4
    Updating `~/.julia/environments/v1.12/Project.toml`
  [9d196975] + eQuilibrator v2.1.0
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [a4c015fc] + ANSIColoredPrinters v0.0.1
  [1520ce14] + AbstractTrees v0.4.5
  [49dc2e85] + Calculus v0.5.2
  [944b1d66] + CodecZlib v0.7.8
  [8f4d0f93] + Conda v1.10.2
  [a8cc5b0e] + Crayons v4.1.1
  [ffbed154] + DocStringExtensions v0.9.3
  [e30172f5] + Documenter v1.9.0
  [d7ba0133] + Git v1.3.1
  [b5f81e59] + IOCapture v0.2.5
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [0e77f7df] + LazilyInitializedFields v1.3.0
  [1914dd2f] + MacroTools v0.5.15
  [d0879d2d] + MarkdownAST v0.1.2
  [eff96d63] + Measurements v2.12.0
  [69de0a69] + Parsers v2.8.1
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [438e738f] + PyCall v1.96.4
  [2792f1a3] + RegistryInstances v0.1.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [1986cc42] + Unitful v1.22.0
  [81def892] + VersionParsing v1.3.0
  [9d196975] + eQuilibrator v2.1.0
  [2e619515] + Expat_jll v2.6.5+0
  [f8c6e375] + Git_jll v2.47.1+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.8.0+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+1
  [14a3606d] + MozillaCACerts_jll v2024.11.26
  [4536629a] + OpenBLAS_jll v0.3.28+3
  [efcefdf7] + PCRE2_jll v10.44.0+0
  [83775a58] + Zlib_jll v1.3.1+1
  [8e850b90] + libblastrampoline_jll v5.11.2+0
  [8e850ede] + nghttp2_jll v1.63.0+1
  [3f19e933] + p7zip_jll v17.5.0+1
    Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log`
    Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log`

Installation completed after 66.58s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 33.56s


################################################################################
# Testing
#

     Testing eQuilibrator
      Status `/tmp/jl_HAcZ5K/Project.toml`
  [8f4d0f93] Conda v1.10.2
  [a8cc5b0e] Crayons v4.1.1
  [ffbed154] DocStringExtensions v0.9.3
  [e30172f5] Documenter v1.9.0
  [eff96d63] Measurements v2.12.0
  [438e738f] PyCall v1.96.4
  [1986cc42] Unitful v1.22.0
  [9d196975] eQuilibrator v2.1.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_HAcZ5K/Manifest.toml`
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [1520ce14] AbstractTrees v0.4.5
  [49dc2e85] Calculus v0.5.2
  [944b1d66] CodecZlib v0.7.8
  [8f4d0f93] Conda v1.10.2
  [a8cc5b0e] Crayons v4.1.1
  [ffbed154] DocStringExtensions v0.9.3
  [e30172f5] Documenter v1.9.0
  [d7ba0133] Git v1.3.1
  [b5f81e59] IOCapture v0.2.5
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [0e77f7df] LazilyInitializedFields v1.3.0
  [1914dd2f] MacroTools v0.5.15
  [d0879d2d] MarkdownAST v0.1.2
  [eff96d63] Measurements v2.12.0
  [69de0a69] Parsers v2.8.1
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [438e738f] PyCall v1.96.4
  [2792f1a3] RegistryInstances v0.1.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [1986cc42] Unitful v1.22.0
  [81def892] VersionParsing v1.3.0
  [9d196975] eQuilibrator v2.1.0
  [2e619515] Expat_jll v2.6.5+0
  [f8c6e375] Git_jll v2.47.1+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.2.0+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.8.0+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+1
  [14a3606d] MozillaCACerts_jll v2024.11.26
  [4536629a] OpenBLAS_jll v0.3.28+3
  [efcefdf7] PCRE2_jll v10.44.0+0
  [83775a58] Zlib_jll v1.3.1+1
  [8e850b90] libblastrampoline_jll v5.11.2+0
  [8e850ede] nghttp2_jll v1.63.0+1
  [3f19e933] p7zip_jll v17.5.0+1
     Testing Running tests...
ERROR: LoadError: PyError (PyImport_ImportModule

The Python package equilibrator_api could not be imported by pyimport. Usually this means
that you did not install equilibrator_api in the Python version being used by PyCall.

PyCall is currently configured to use the Julia-specific Python distribution
installed by the Conda.jl package.  To install the equilibrator_api module, you can
use `pyimport_conda("equilibrator_api", PKG)`, where PKG is the Anaconda
package that contains the module equilibrator_api, or alternatively you can use the
Conda package directly (via `using Conda` followed by `Conda.add` etcetera).

Alternatively, if you want to use a different Python distribution on your
system, such as a system-wide Python (as opposed to the Julia-specific Python),
you can re-configure PyCall with that Python.   As explained in the PyCall
documentation, set ENV["PYTHON"] to the path/name of the python executable
you want to use, run Pkg.build("PyCall"), and re-launch Julia.

) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'equilibrator_api'")

Stacktrace:
 [1] pyimport(name::String)
   @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558
 [2] Equilibrator(; pH::Float64, pMg::Float64, ionic_strength::Quantity{Float64, 𝐍 𝐋^-3, Unitful.FreeUnits{(M,), 𝐍 𝐋^-3, nothing}}, temperature::Quantity{Float64, 𝚯, Unitful.FreeUnits{(K,), 𝚯, nothing}})
   @ eQuilibrator ~/.julia/packages/eQuilibrator/NAgOd/src/equilibrator_type.jl:53
 [3] Equilibrator()
   @ eQuilibrator ~/.julia/packages/eQuilibrator/NAgOd/src/equilibrator_type.jl:47
 [4] top-level scope
   @ ~/.julia/packages/eQuilibrator/NAgOd/test/runtests.jl:7
 [5] include(mapexpr::Function, mod::Module, _path::String)
   @ Base ./Base.jl:301
 [6] top-level scope
   @ none:6
 [7] eval(m::Module, e::Any)
   @ Core ./boot.jl:485
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:295
 [9] _start()
   @ Base ./client.jl:558
in expression starting at /home/pkgeval/.julia/packages/eQuilibrator/NAgOd/test/runtests.jl:7

Testing failed after 27.3s

ERROR: LoadError: Package eQuilibrator errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481
  [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:300
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [12] _start()
    @ Base ./client.jl:558
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 155.12s: package tests unexpectedly errored