Package evaluation of TMLE on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T00:37:24.016 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.18s ################################################################################ # Installation # Installing TMLE... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [8afdd2fb] + TMLE v0.18.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.1 [15f4f7f2] + AutoHashEquals v2.2.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [fa961155] + CEnum v0.5.0 [324d7699] + CategoricalArrays v0.10.8 [af321ab8] + CategoricalDistributions v0.1.15 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [3da002f7] + ColorTypes v0.12.0 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.5.8 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.4 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.48 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v0.10.38 [38e38edf] + GLM v1.9.0 [0c68f7d7] + GPUArrays v11.2.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.12.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.3 [7869d1d1] + IRTools v0.4.14 [313cdc1a] + Indexing v1.1.1 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.12 [692b3bcd] + JLLWrappers v1.7.0 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.34 [929cbde3] + LLVM v9.2.0 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [92ad9a40] + LearnAPI v0.1.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 [a7f614a8] + MLJBase v1.7.0 [caf8df21] + MLJGLMInterface v0.3.7 [e80e1ace] + MLJModelInterface v1.11.0 [d491faf4] + MLJModels v0.17.9 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.15 [fa8bd995] + MetaGraphsNext v0.7.2 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.29 [77ba4419] + NaNMath v1.1.2 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [d96e819e] + Parameters v0.12.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [54e16d92] + PrettyPrinting v0.4.2 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.6 [321657f4] + ScientificTypes v3.1.0 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.0 [03a91e81] + SplitApplyCombine v1.2.3 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [c062fc1d] + StatisticalMeasuresBase v0.1.2 [64bff920] + StatisticalTraits v3.4.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.0 [8afdd2fb] + TMLE v0.18.0 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [e88e6eb3] + Zygote v0.7.4 [700de1a5] + ZygoteRules v0.2.7 [dad2f222] + LLVMExtra_jll v0.0.35+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1280.31s ################################################################################ # Testing # Testing TMLE Status `/tmp/jl_zxEOmQ/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [6af48e0c] CausalTables v1.2.3 [861a8166] Combinatorics v1.0.2 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.118 [09f84164] HypothesisTests v0.11.3 [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 [a7f614a8] MLJBase v1.7.0 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.0 [d491faf4] MLJModels v0.17.9 [bac558e1] OrderedCollections v1.8.0 [860ef19b] StableRNGs v1.0.2 ⌅ [a19d573c] StatisticalMeasures v0.1.7 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [8afdd2fb] TMLE v0.18.0 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.12.0 [ddb6d928] YAML v0.4.13 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zxEOmQ/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 [15f4f7f2] AutoHashEquals v2.2.0 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [af321ab8] CategoricalDistributions v0.1.15 [6af48e0c] CausalTables v1.2.3 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [5900dafe] CoDa v1.4.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.0 [9cc86067] ColumnSelectors v1.0.0 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [6cb2f572] DataScienceTraits v1.0.2 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.4 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.48 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v0.10.38 [38e38edf] GLM v1.9.0 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.12.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.3 [7869d1d1] IRTools v0.4.14 [313cdc1a] Indexing v1.1.1 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.3 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.12 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.34 [929cbde3] LLVM v9.2.0 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [92ad9a40] LearnAPI v0.1.0 [d3d80556] LineSearches v7.3.0 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [a7f614a8] MLJBase v1.7.0 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.0 [e80e1ace] MLJModelInterface v1.11.0 [d491faf4] MLJModels v0.17.9 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.15 [fa8bd995] MetaGraphsNext v0.7.2 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.9.0 [872c559c] NNlib v0.9.29 [77ba4419] NaNMath v1.1.2 [71a1bf82] NameResolution v0.1.5 [2f6b4ddb] NelderMead v0.4.0 [429524aa] Optim v1.11.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [54e16d92] PrettyPrinting v0.4.2 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.6 [321657f4] ScientificTypes v3.1.0 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [03a91e81] SplitApplyCombine v1.2.3 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 ⌅ [a19d573c] StatisticalMeasures v0.1.7 [c062fc1d] StatisticalMeasuresBase v0.1.2 [64bff920] StatisticalTraits v3.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [3eaba693] StatsModels v0.7.4 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.0 [8afdd2fb] TMLE v0.18.0 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [0d432bfd] TableTransforms v1.33.11 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [28dd2a49] TransformsBase v1.6.0 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.22.0 [013be700] UnsafeAtomics v0.3.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.13 [e88e6eb3] Zygote v0.7.4 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.35+0 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Test expected_value | 3 3 1m06.7s Test Summary: | Pass Total Time Test counterfactualTreatment | 3 3 16.2s Test Summary: | Pass Total Time Test positivity_constraint & get_frequency_table | 28 28 22.1s Test Summary: | Pass Total Time Test SCM | 17 17 7.3s Test Summary: | Pass Total Time Test StaticSCM | 9 9 0.3s Test Summary: | Pass Total Time Test BackdoorAdjustment | 16 16 5.5s Test Summary: | Pass Total Time Test TMLE.to_dict | 2 2 0.4s Test Summary: | Pass Total Time Test ConditionalDistribution | 3 3 0.4s Test Summary: | Pass Total Time Test CMRelevantFactors | 2 2 1.1s Test Summary: | Pass Total Time Test JointEstimand and ComposedEstimand | 5 5 6.4s Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: binary outcome | 11 11 1m07.9s Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: continuous outcome | 7 7 11.7s Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: Binary outcome | 14 14 11.8s Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: Continuous outcome | 7 7 1.8s Test Summary: | Pass Total Time Test nomissing | 9 9 11.2s Test Summary: | Pass Total Time Test estimation with missing values and ordered factor treatment | 2 2 1m42.5s Test Summary: | Pass Total Time Test cov | 2 2 3.3s Test Summary: | Pass Total Time Test composition CM(1) - CM(0) = ATE(1,0) | 8 8 1m38.0s Dict{Symbol, Any}(:f => "Main.f", :type => "ComposedEstimand", :estimand => Dict{Symbol, Any}(:type => "JointEstimand", :args => Dict{Symbol, Any}[Dict(:outcome_extra_covariates => Union{}[], :type => "CM", :treatment_values => OrderedCollections.OrderedDict(:T => 1), :outcome => :Y, :treatment_confounders => Dict(:T => [:W])), Dict(:outcome_extra_covariates => Union{}[], :type => "CM", :treatment_values => OrderedCollections.OrderedDict(:T => 0), :outcome => :Y, :treatment_confounders => Dict(:T => [:W]))])) Test Summary: | Pass Total Time Test compose multidimensional function | 8 8 14.7s Precompiling packages... 161373.8 ms ✓ TMLE → JSONExt 1 dependency successfully precompiled in 169 seconds. 239 already precompiled. Test Summary: | Pass Total Time Test Joint Interaction | 19 19 3m59.5s ┌ Warning: The TreatmentTransformer is deprecated and will be removed in future version, it has been replaced by MLJModels.ContinuousEncoder. │ caller = top-level scope at treatment_transformer.jl:12 └ @ Core ~/.julia/packages/TMLE/UigWe/test/treatment_transformer.jl:12 Test Summary: | Pass Total Time Test TreatmentTransformer | 2 2 10.5s Test Summary: | Pass Total Time Test Configurations | 8 8 24.5s Test Summary: | Pass Total Time Test with an SCM and causal estimands | 6 6 2.1s Test Summary: | Pass Total Time Test serialization | 3 3 3.7s Test Summary: | Pass Total Time Test misc | 127 127 20.5s Test Summary: | Pass Total Time Test ordering strategies | 8 8 4.6s Test Summary: | Pass Total Time Test ordering strategies with Joint Estimands | 4 4 5.7s WARNING: replacing module TestEstimands. Test Summary: | Pass Total Time Test StatisticalCMCompositeEstimand | 8 8 6.5s Test Summary: | Pass Total Time Test standardization of StatisticalCMCompositeEstimand | 10 10 2.4s Test Summary: | Pass Total Time Test structs are concrete types | 3 3 0.0s Test Summary: | Pass Total Time Test dictionary conversion | 8 8 7.5s Test Summary: | Pass Total Time Test control_case_settings | 6 6 11.5s Test Summary: | Pass Total Time Test unique_treatment_values | 2 2 13.2s Test Summary: | Pass Total Time factorialEstimand errors | 2 2 3.5s Test Summary: | Pass Total Time Test factorial CM | 2 2 5.3s Test Summary: | Pass Total Time Test factorial ATE | 3 3 7.6s Test Summary: | Pass Total Time Test factorial AIE | 3 3 4.7s Test Summary: | Pass Total Time Test factorialEstimands | 2 2 0.1s Test Summary: | Pass Total Time Test ps_lower_bound | 5 5 0.1s Test Summary: | Pass Total Time Test clever_covariate_and_weights: 1 treatment | 4 4 19.0s Test Summary: | Pass Total Time Test clever_covariate_and_weights: 2 treatments | 2 2 2.6s Test Summary: | Pass Total Time Test compute_offset, clever_covariate_and_weights: 3 treatments | 2 2 23.1s Test Summary: | Pass Total Time Test gradient_and_plugin_estimate | 5 5 35.6s [ Info: TMLE step: 1. [ Info: Convergence criterion reached. Test Summary: | Pass Total Time Test Fluctuation with 1 Treatments | 21 21 17.5s [ Info: TMLE step: 1. [ Info: Convergence criterion reached. Test Summary: | Pass Total Time Test Fluctuation with 2 Treatments | 11 11 18.5s Test Summary: | Pass Total Time Test same_type_nt | 6 6 0.6s Test Summary: | Pass Total Time Test CMRelevantFactorsEstimator | 14 14 21.3s ┌ Warning: The number and/or types of data arguments do not match what the specified model │ supports. Suppress this type check by specifying `scitype_check_level=0`. │ │ Run `@doc MLJLinearModels.LinearRegressor` to learn more about your model's requirements. │ │ Commonly, but non exclusively, supervised models are constructed using the syntax │ `machine(model, X, y)` or `machine(model, X, y, w)` while most other models are │ constructed with `machine(model, X)`. Here `X` are features, `y` a target, and `w` │ sample or class weights. │ │ In general, data in `machine(model, data...)` is expected to satisfy │ │ scitype(data) <: MLJ.fit_data_scitype(model) │ │ In the present case: │ │ scitype(data) = Tuple{ScientificTypesBase.Table{AbstractVector{ScientificTypesBase.Continuous}}, AbstractVector{ScientificTypesBase.OrderedFactor{2}}} │ │ fit_data_scitype(model) = Tuple{ScientificTypesBase.Table{<:AbstractVector{<:ScientificTypesBase.Continuous}}, AbstractVector{ScientificTypesBase.Continuous}} └ @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:237 ┌ Error: Problem fitting the machine machine(LinearRegressor(fit_intercept = true, …), …). └ @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:694 [ Info: Running type checks... ┌ Warning: The number and/or types of data arguments do not match what the specified model │ supports. Suppress this type check by specifying `scitype_check_level=0`. │ │ Run `@doc MLJLinearModels.LinearRegressor` to learn more about your model's requirements. │ │ Commonly, but non exclusively, supervised models are constructed using the syntax │ `machine(model, X, y)` or `machine(model, X, y, w)` while most other models are │ constructed with `machine(model, X)`. Here `X` are features, `y` a target, and `w` │ sample or class weights. │ │ In general, data in `machine(model, data...)` is expected to satisfy │ │ scitype(data) <: MLJ.fit_data_scitype(model) │ │ In the present case: │ │ scitype(data) = Tuple{ScientificTypesBase.Table{AbstractVector{ScientificTypesBase.Continuous}}, AbstractVector{ScientificTypesBase.OrderedFactor{2}}} │ │ fit_data_scitype(model) = Tuple{ScientificTypesBase.Table{<:AbstractVector{<:ScientificTypesBase.Continuous}}, AbstractVector{ScientificTypesBase.Continuous}} └ @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:237 [ Info: It seems an upstream node in a learning network is providing data of incompatible scitype. See above. ┌ Warning: The number and/or types of data arguments do not match what the specified model │ supports. Suppress this type check by specifying `scitype_check_level=0`. │ │ Run `@doc MLJLinearModels.LogisticClassifier` to learn more about your model's requirements. │ │ Commonly, but non exclusively, supervised models are constructed using the syntax │ `machine(model, X, y)` or `machine(model, X, y, w)` while most other models are │ constructed with `machine(model, X)`. Here `X` are features, `y` a target, and `w` │ sample or class weights. │ │ In general, data in `machine(model, data...)` is expected to satisfy │ │ scitype(data) <: MLJ.fit_data_scitype(model) │ │ In the present case: │ │ scitype(data) = Tuple{ScientificTypesBase.Table{Union{AbstractVector{ScientificTypesBase.Continuous}, AbstractVector{ScientificTypesBase.OrderedFactor{2}}}}, AbstractVector{ScientificTypesBase.Continuous}} │ │ fit_data_scitype(model) = Tuple{ScientificTypesBase.Table{<:AbstractVector{<:ScientificTypesBase.Continuous}}, AbstractVector{<:ScientificTypesBase.Finite}} └ @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:237 ┌ Error: Problem fitting the machine machine(LogisticClassifier(lambda = 2.220446049250313e-16, …), …). └ @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:694 [ Info: Running type checks... ┌ Warning: The number and/or types of data arguments do not match what the specified model │ supports. Suppress this type check by specifying `scitype_check_level=0`. │ │ Run `@doc MLJLinearModels.LogisticClassifier` to learn more about your model's requirements. │ │ Commonly, but non exclusively, supervised models are constructed using the syntax │ `machine(model, X, y)` or `machine(model, X, y, w)` while most other models are │ constructed with `machine(model, X)`. Here `X` are features, `y` a target, and `w` │ sample or class weights. │ │ In general, data in `machine(model, data...)` is expected to satisfy │ │ scitype(data) <: MLJ.fit_data_scitype(model) │ │ In the present case: │ │ scitype(data) = Tuple{ScientificTypesBase.Table{Union{AbstractVector{ScientificTypesBase.Continuous}, AbstractVector{ScientificTypesBase.OrderedFactor{2}}}}, AbstractVector{ScientificTypesBase.Continuous}} │ │ fit_data_scitype(model) = Tuple{ScientificTypesBase.Table{<:AbstractVector{<:ScientificTypesBase.Continuous}}, AbstractVector{<:ScientificTypesBase.Finite}} └ @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:237 [ Info: It seems an upstream node in a learning network is providing data of incompatible scitype. See above. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 303 running 1 of 1 signal (10): User defined signal 1 _ZL33updateCGAndAnalysisManagerForPassRN4llvm13LazyCallGraphERNS0_3SCCERNS0_4NodeERNS_15AnalysisManagerIS2_JS1_EEERNS_17CGSCCUpdateResultERNS6_INS_8FunctionEJEEEb at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm26CGSCCToFunctionPassAdaptor3runERNS_13LazyCallGraph3SCCERNS_15AnalysisManagerIS2_JRS1_EEES5_RNS_17CGSCCUpdateResultE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_13LazyCallGraph3SCCENS_15AnalysisManagerIS2_JRS1_EEEJS4_RNS_17CGSCCUpdateResultEEE3runERS2_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm33ModuleToPostOrderCGSCCPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:740 operator() at /source/src/jitlayers.cpp:1532 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1493 [inlined] operator() at /source/src/jitlayers.cpp:1645 [inlined] addModule at /source/src/jitlayers.cpp:2104 jl_compile_codeinst_now at /source/src/jitlayers.cpp:569 _jl_compile_codeinst at /source/src/jitlayers.cpp:758 [inlined] jl_compile_codeinst_impl at /source/src/jitlayers.cpp:902 jl_compile_method_internal at /source/src/gf.c:2890 _jl_invoke at /source/src/gf.c:3351 [inlined] ijl_apply_generic at /source/src/gf.c:3547 File at /home/pkgeval/.julia/packages/CSV/XLcqT/src/file.jl:290 File at /home/pkgeval/.julia/packages/CSV/XLcqT/src/file.jl:227 [inlined] #File#18 at /home/pkgeval/.julia/packages/CSV/XLcqT/src/file.jl:223 [inlined] File at /home/pkgeval/.julia/packages/CSV/XLcqT/src/file.jl:162 #read#102 at /home/pkgeval/.julia/packages/CSV/XLcqT/src/CSV.jl:117 read at /home/pkgeval/.julia/packages/CSV/XLcqT/src/CSV.jl:113 unknown function (ip: 0x795c33536116) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:585 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_eval_module_expr at /source/src/toplevel.c:231 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:866 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 macro expansion at /home/pkgeval/.julia/packages/TMLE/UigWe/test/runtests.jl:25 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] macro expansion at /home/pkgeval/.julia/packages/TMLE/UigWe/test/runtests.jl:25 [inlined] macro expansion at ./timing.jl:611 [inlined] top-level scope at /home/pkgeval/.julia/packages/TMLE/UigWe/test/runtests.jl:343 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_invoke at /source/src/gf.c:3366 jl_toplevel_eval_flex at /source/src/toplevel.c:1059 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 exec_options at ./client.jl:295 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x795c603f8249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_97191.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2377 unknown function (ip: 0x7427fd784ed3) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #201 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2317 withenv at ./env.jl:265 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2138 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1996 #182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2105 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x7427fd7701cc) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#178 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2052 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2044 unknown function (ip: 0x7427fd76d6e1) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2302 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:460 unknown function (ip: 0x7427fd76d311) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 unknown function (ip: 0x7427fd762c88) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:148 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 unknown function (ip: 0x7427fd7619ff) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:300 exec_options at ./client.jl:329 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7427ff668249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007427f1400010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:558 _start() ╎ 1 @Base/client.jl:329 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:300 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2906 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2846 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:485 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:146 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:147 test ╎ ╎ 1 @Pkg/src/API.jl:147 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:148 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159 test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2214 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2302 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2044 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2052 #sandbox#178 ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#18… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2105 (::Pkg.Operations.var"#182#183"… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:1996 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2138 (::Pkg.Operations.var"#186#187… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265 withenv(::Pkg.Operations.var"#201… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2317 (::Pkg.Operations.var"#201#20… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2377 subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:694 wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:141 wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1199 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1187 poptask(W::Base.Intrusiv… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 [303] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:84 _ZN4llvm10BasicBlock4phisEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm26EliminateDuplicatePHINodesEPNS_10BasicBlockERNS_15SmallPtrSetImplIPNS_7PHINodeEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm26EliminateDuplicatePHINodesEPNS_10BasicBlockE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11simplifyCFGEPNS_10BasicBlockERKNS_19TargetTransformInfoEPNS_14DomTreeUpdaterERKNS_18SimplifyCFGOptionsENS_8ArrayRefINS_6WeakVHEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) poptask at ./task.jl:1187 _ZL22iterativelySimplifyCFGRN4llvm8FunctionERKNS_19TargetTransformInfoEPNS_14DomTreeUpdaterERKNS_18SimplifyCFGOptionsE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) wait at ./task.jl:1199 _ZL23simplifyFunctionCFGImplRN4llvm8FunctionERKNS_19TargetTransformInfoEPNS_13DominatorTreeERKNS_18SimplifyCFGOptionsE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 _ZL19simplifyFunctionCFGRN4llvm8FunctionERKNS_19TargetTransformInfoEPNS_13DominatorTreeERKNS_18SimplifyCFGOptionsE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15SimplifyCFGPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:740 operator() at /source/src/jitlayers.cpp:1532 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1493 [inlined] operator() at /source/src/jitlayers.cpp:1645 [inlined] addModule at /source/src/jitlayers.cpp:2104 jl_compile_codeinst_now at /source/src/jitlayers.cpp:569 _jl_compile_codeinst at /source/src/jitlayers.cpp:758 [inlined] jl_compile_codeinst_impl at /source/src/jitlayers.cpp:902 jl_compile_method_internal at /source/src/gf.c:2890 _jl_invoke at /source/src/gf.c:3351 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 profile_printing_listener at ./Base.jl:326 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_eval_module_expr at /source/src/toplevel.c:231 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:866 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 #start_profile_listener##0 at ./Base.jl:346 eval at ./boot.jl:485 jfptr_YY.start_profile_listenerYY.YY.0_111230.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 23173921 (Pool: 23172259; Big: 1662); GC: 24 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 macro expansion at /home/pkgeval/.julia/packages/TMLE/UigWe/test/runtests.jl:25 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] macro expansion at /home/pkgeval/.julia/packages/TMLE/UigWe/test/runtests.jl:25 [inlined] macro expansion at ./timing.jl:611 [inlined] top-level scope at /home/pkgeval/.julia/packages/TMLE/UigWe/test/runtests.jl:343 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_invoke at /source/src/gf.c:3366 jl_toplevel_eval_flex at /source/src/toplevel.c:1059 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 exec_options at ./client.jl:295 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x795c603f8249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 552518116 (Pool: 552510886; Big: 7230); GC: 134 PkgEval terminated after 2725.49s: test duration exceeded the time limit