Package evaluation of SyntacticModels on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T04:09:38.874 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.23s ################################################################################ # Installation # Installing SyntacticModels... Resolving package versions... Installed JpegTurbo_jll ──────────────────── v3.1.1+0 Installed ImageIO ────────────────────────── v0.6.9 Installed TiledIteration ─────────────────── v0.5.0 Installed OffsetArrays ───────────────────── v1.16.0 Installed AxisArrays ─────────────────────── v0.4.7 Installed TiffImages ─────────────────────── v0.11.3 Installed ImageSegmentation ──────────────── v1.8.4 Installed MutableArithmetics ─────────────── v1.6.4 Installed LERC_jll ───────────────────────── v3.0.0+1 Installed GATlab ─────────────────────────── v0.1.5 Installed JpegTurbo ──────────────────────── v0.1.6 Installed PNGFiles ───────────────────────── v0.4.4 Installed Preferences ────────────────────── v1.4.3 Installed HistogramThresholding ──────────── v0.3.1 Installed FFTW ───────────────────────────── v1.8.1 Installed Accessors ──────────────────────── v0.1.42 Installed ImageMagick ────────────────────── v1.4.0 Installed Sixel ──────────────────────────── v0.1.3 Installed RegionTrees ────────────────────── v0.3.2 Installed TimerOutputs ───────────────────── v0.5.28 Installed Measures ───────────────────────── v0.3.2 Installed ProgressMeter ──────────────────── v1.10.2 Installed NearestNeighbors ───────────────── v0.4.21 Installed StaticArrays ───────────────────── v1.9.13 Installed Permutations ───────────────────── v0.4.23 Installed OpenEXR ────────────────────────── v0.3.3 Installed Images ─────────────────────────── v0.26.2 Installed Xorg_libpthread_stubs_jll ──────── v0.1.2+0 Installed CEnum ──────────────────────────── v0.5.0 Installed Statistics ─────────────────────── v1.11.1 Installed Libgpg_error_jll ───────────────── v1.51.1+0 Installed IntelOpenMP_jll ────────────────── v2025.0.4+0 Installed Polynomials ────────────────────── v4.0.19 Installed FileIO ─────────────────────────── v1.17.0 Installed Bijections ─────────────────────── v0.1.9 Installed Netpbm ─────────────────────────── v1.1.1 Installed MetaGraphs ─────────────────────── v0.7.2 Installed Catlab ─────────────────────────── v0.16.19 Installed PrettyPrint ────────────────────── v0.2.0 Installed Static ─────────────────────────── v1.2.0 Installed SLEEFPirates ───────────────────── v0.6.43 Installed Xorg_libXau_jll ────────────────── v1.0.12+0 Installed Missings ───────────────────────── v1.2.0 Installed Distances ──────────────────────── v0.10.12 Installed RealDot ────────────────────────── v0.1.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed IrrationalConstants ────────────── v0.2.4 Installed SIMD ───────────────────────────── v3.7.1 Installed Giflib_jll ─────────────────────── v5.2.3+0 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed MultivariatePolynomials ────────── v0.5.7 Installed JLD2 ───────────────────────────── v0.4.54 Installed CpuId ──────────────────────────── v0.3.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed QOI ────────────────────────────── v1.0.1 Installed JSON ───────────────────────────── v0.21.4 Installed SpecialFunctions ───────────────── v2.5.0 Installed IfElse ─────────────────────────── v0.1.1 Installed PkgVersion ─────────────────────── v0.3.3 Installed StaticArraysCore ───────────────── v1.4.3 Installed NaNMath ────────────────────────── v1.1.2 Installed Clustering ─────────────────────── v0.15.8 Installed ThreadingUtilities ─────────────── v0.5.2 Installed NameResolution ─────────────────── v0.1.5 Installed DiagrammaticEquations ──────────── v0.1.8 Installed TranscodingStreams ─────────────── v0.11.3 Installed WebP ───────────────────────────── v0.1.3 Installed CustomUnitRanges ───────────────── v1.0.2 Installed ManualMemory ───────────────────── v0.1.8 Installed Graphics ───────────────────────── v1.1.3 Installed ImageContrastAdjustment ────────── v0.3.12 Installed Ratios ─────────────────────────── v0.4.5 Installed ImageMetadata ──────────────────── v0.9.10 Installed ComputationalResources ─────────── v0.3.2 Installed Colors ─────────────────────────── v0.12.11 Installed DataStructures ─────────────────── v0.18.22 Installed MappedArrays ───────────────────── v0.4.2 Installed CatIndices ─────────────────────── v0.2.2 Installed ImageMagick_jll ────────────────── v7.1.1+1 Installed StructEquality ─────────────────── v2.1.0 Installed PaddedViews ────────────────────── v0.5.12 Installed Graphs ─────────────────────────── v1.12.0 Installed StatsAPI ───────────────────────── v1.7.0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed ExprTools ──────────────────────── v0.1.10 Installed Compat ─────────────────────────── v4.16.0 Installed ImageTransformations ───────────── v0.10.1 Installed LazyModules ────────────────────── v0.3.1 Installed MosaicViews ────────────────────── v0.3.4 Installed StaticArrayInterface ───────────── v1.8.0 Installed MLStyle ────────────────────────── v0.4.17 Installed StatsBase ──────────────────────── v0.34.4 Installed libpng_jll ─────────────────────── v1.6.47+0 Installed Xorg_libxcb_jll ────────────────── v1.17.0+3 Installed DynamicPolynomials ─────────────── v0.6.1 Installed StructTypes ────────────────────── v1.11.0 Installed ColorTypes ─────────────────────── v0.11.5 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed ImageCorners ───────────────────── v0.1.3 Installed ImageCore ──────────────────────── v0.10.5 Installed oneTBB_jll ─────────────────────── v2022.0.0+0 Installed Xorg_libXext_jll ───────────────── v1.3.6+3 Installed TensorCore ─────────────────────── v0.1.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed JSON3 ──────────────────────────── v1.14.1 Installed Zstd_jll ───────────────────────── v1.5.7+1 Installed TableTraits ────────────────────── v1.0.1 Installed SyntacticModels ────────────────── v0.2.0 Installed Inflate ────────────────────────── v0.1.5 Installed ImageShow ──────────────────────── v0.3.8 Installed Parsers ────────────────────────── v2.8.1 Installed ImageQualityIndexes ────────────── v0.3.7 Installed QuartzImageIO ──────────────────── v0.7.5 Installed PrettyTables ───────────────────── v2.4.0 Installed Imath_jll ──────────────────────── v3.1.11+0 Installed MKL_jll ────────────────────────── v2025.0.1+1 Installed IntegralArrays ─────────────────── v0.1.6 Installed Libtiff_jll ────────────────────── v4.4.0+0 Installed Setfield ───────────────────────── v1.1.2 Installed AbstractFFTs ───────────────────── v1.5.0 Installed JLLWrappers ────────────────────── v1.7.0 Installed ExproniconLite ─────────────────── v0.10.14 Installed LoopVectorization ──────────────── v0.12.171 Installed ColorSchemes ───────────────────── v3.29.0 Installed GeneralizedGenerated ───────────── v0.3.3 Installed ColorVectorSpace ───────────────── v0.10.0 Installed ConstructionBase ───────────────── v1.5.8 Installed DataValueInterfaces ────────────── v1.0.0 Installed AbstractTrees ──────────────────── v0.4.5 Installed CoordinateTransformations ──────── v0.6.4 Installed OrderedCollections ─────────────── v1.8.0 Installed Combinatorics ──────────────────── v1.0.2 Installed ChainRulesCore ─────────────────── v1.25.1 Installed XSLT_jll ───────────────────────── v1.1.42+0 ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:729 Installed PolyesterWeave ─────────────────── v0.2.2 Installed ArrayInterface ─────────────────── v7.18.0 Installed AlgebraicInterfaces ────────────── v0.1.4 Installed Reexport ───────────────────────── v1.2.2 Installed Interpolations ─────────────────── v0.15.1 Installed Ghostscript_jll ────────────────── v9.55.0+4 Installed StackViews ─────────────────────── v0.1.1 Installed LogExpFunctions ────────────────── v0.3.29 Installed AliasTables ────────────────────── v1.1.3 Installed Quaternions ────────────────────── v0.7.6 Installed LittleCMS_jll ──────────────────── v2.12.0+0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed RangeArrays ────────────────────── v0.3.2 Installed FFTW_jll ───────────────────────── v3.3.10+3 Installed MacroTools ─────────────────────── v0.5.15 Installed Rotations ──────────────────────── v1.7.1 Installed CompositionsBase ───────────────── v0.1.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed UnPack ─────────────────────────── v1.0.2 Installed JuliaVariables ─────────────────── v0.2.4 Installed InverseFunctions ───────────────── v0.1.17 Installed ImageFiltering ─────────────────── v0.7.9 Installed SimpleTraits ───────────────────── v0.9.4 Installed OpenEXR_jll ────────────────────── v3.2.4+0 Installed DocStringExtensions ────────────── v0.9.3 Installed Crayons ────────────────────────── v4.1.1 Installed TaskLocalValues ────────────────── v0.1.2 Installed Compose ────────────────────────── v0.9.5 Installed Adapt ──────────────────────────── v4.3.0 Installed XML2_jll ───────────────────────── v2.13.6+1 Installed ImageBase ──────────────────────── v0.1.7 Installed IntervalSets ───────────────────── v0.7.10 Installed VectorizationBase ──────────────── v0.21.71 Installed Xorg_xtrans_jll ────────────────── v1.5.1+0 Installed IterTools ──────────────────────── v1.10.0 Installed ImageBinarization ──────────────── v0.3.1 Installed OpenJpeg_jll ───────────────────── v2.4.0+0 Installed Libgcrypt_jll ──────────────────── v1.11.0+0 Installed IndirectArrays ─────────────────── v1.0.0 Installed RuntimeGeneratedFunctions ──────── v0.5.13 Installed SimpleWeightedGraphs ───────────── v1.5.0 Installed CPUSummary ─────────────────────── v0.2.6 Installed TermInterface ──────────────────── v2.0.0 Installed Tables ─────────────────────────── v1.12.0 Installed DataAPI ────────────────────────── v1.16.0 Installed RecipesBase ────────────────────── v1.3.4 Installed FixedPointNumbers ──────────────── v0.8.5 Installed ImageDistances ─────────────────── v0.2.17 Installed ColorSchemeTools ───────────────── v1.6.0 Installed SymbolicUtils ──────────────────── v3.22.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed PrecompileTools ────────────────── v1.2.1 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Unityper ───────────────────────── v0.1.6 Installed HostCPUFeatures ────────────────── v0.1.17 Installed libsixel_jll ───────────────────── v1.10.5+0 Installed Libglvnd_jll ───────────────────── v1.7.0+0 Installed SymbolicIndexingInterface ──────── v0.3.38 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed ImageAxes ──────────────────────── v0.6.12 Installed Xorg_libX11_jll ────────────────── v1.8.6+3 Installed Requires ───────────────────────── v1.3.1 Installed CompTime ───────────────────────── v0.1.2 Installed Xorg_libXdmcp_jll ──────────────── v1.1.5+0 Installed FFTViews ───────────────────────── v0.3.2 Installed Parameters ─────────────────────── v0.12.3 Installed LightXML ───────────────────────── v0.9.1 Installed ImageMorphology ────────────────── v0.4.5 Installed libwebp_jll ────────────────────── v1.4.0+0 Installed WoodburyMatrices ───────────────── v1.0.0 Installed StringManipulation ─────────────── v0.4.1 Installed SortingAlgorithms ──────────────── v1.2.1 Installed PEG ────────────────────────────── v1.0.2 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─────────────────────────── v0.2.21 Installing 30 artifacts Installed artifact Xorg_libXau 36.6 KiB Installed artifact Xorg_xtrans 47.7 KiB Installed artifact libsixel 177.3 KiB Installed artifact Xorg_libXext 699.3 KiB Installed artifact Libgpg_error 575.5 KiB Installed artifact Zstd 646.0 KiB Installed artifact Giflib 154.6 KiB Installed artifact OpenJpeg 403.1 KiB Installed artifact libpng 328.5 KiB Installed artifact Libtiff 2.5 MiB Installed artifact XML2 2.5 MiB Installed artifact LERC 218.5 KiB Installed artifact LittleCMS 721.0 KiB Installed artifact XSLT 728.3 KiB Installed artifact Xorg_libpthread_stubs 1.0 KiB Installed artifact Libgcrypt 1.8 MiB Installed artifact oneTBB 435.6 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact libwebp 2.0 MiB Installed artifact Imath 182.8 KiB Installed artifact FFTW 2.2 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Libiconv 1.9 MiB Installed artifact ImageMagick 7.5 MiB Installed artifact JpegTurbo 1.6 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.12/Project.toml` [22bb929c] + SyntacticModels v0.2.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [227ef7b5] + ACSets v0.2.21 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [e2ed5e7c] + Bijections v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [aafaddc9] + CatIndices v0.2.2 [134e5e36] + Catlab v0.16.19 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [d3e213a1] + ColorSchemeTools v1.6.0 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.2 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.16.0 [a81c6b42] + Compose v0.9.5 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.5.8 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [6f00c28b] + DiagrammaticEquations v0.1.8 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.3 [7c1d4256] + DynamicPolynomials v0.6.1 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [4f61f5a4] + FFTViews v0.3.2 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f0ffcf3b] + GATlab v0.1.5 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.12.0 [2c695a8d] + HistogramThresholding v0.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [cbc4b850] + ImageBinarization v0.3.1 [f332f351] + ImageContrastAdjustment v0.3.12 [a09fc81d] + ImageCore v0.10.5 [89d5987c] + ImageCorners v0.1.3 [51556ac3] + ImageDistances v0.2.17 [6a3955dd] + ImageFiltering v0.7.9 [82e4d734] + ImageIO v0.6.9 [6218d12a] + ImageMagick v1.4.0 [bc367c6b] + ImageMetadata v0.9.10 [787d08f9] + ImageMorphology v0.4.5 [2996bd0c] + ImageQualityIndexes v0.3.7 [80713f31] + ImageSegmentation v1.8.4 [4e3cecfd] + ImageShow v0.3.8 [02fcd773] + ImageTransformations v0.10.1 [916415d5] + Images v0.26.2 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [1d092043] + IntegralArrays v0.1.6 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.1 [b835a17e] + JpegTurbo v0.1.6 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.171 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [442fdcdd] + Measures v0.3.2 ⌃ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [102ac46a] + MultivariatePolynomials v0.5.7 [d8a4904e] + MutableArithmetics v1.6.4 [77ba4419] + NaNMath v1.1.2 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.21 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.16.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.0 [12d937ae] + PEG v1.0.2 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [2ae35dd2] + Permutations v0.4.23 [eebad327] + PkgVersion v0.3.3 [1d0040c9] + PolyesterWeave v0.2.2 [f27b6e38] + Polynomials v4.0.19 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [dca85d43] + QuartzImageIO v0.7.5 [94ee1d12] + Quaternions v0.7.6 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [dee08c22] + RegionTrees v0.3.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [45858cf5] + Sixel v0.1.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [cae243ae] + StackViews v0.1.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [892a3eda] + StringManipulation v0.4.1 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [2efcf032] + SymbolicIndexingInterface v0.3.38 [d1185830] + SymbolicUtils v3.22.0 [22bb929c] + SyntacticModels v0.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [ed4db957] + TaskLocalValues v0.1.2 [62fd8b95] + TensorCore v0.1.1 [8ea1fca8] + TermInterface v2.0.0 [8290d209] + ThreadingUtilities v0.5.2 [731e570b] + TiffImages v0.11.3 [06e1c1a7] + TiledIteration v0.5.0 [a759f4b9] + TimerOutputs v0.5.28 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [a7c27f48] + Unityper v0.1.6 [3d5dd08c] + VectorizationBase v0.21.71 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [f5851436] + FFTW_jll v3.3.10+3 [61579ee1] + Ghostscript_jll v9.55.0+4 [59f7168a] + Giflib_jll v5.2.3+0 [c73af94c] + ImageMagick_jll v7.1.1+1 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 ⌅ [88015f11] + LERC_jll v3.0.0+1 [d4300ac3] + Libgcrypt_jll v1.11.0+0 [7e76a0d4] + Libglvnd_jll v1.7.0+0 [7add5ba3] + Libgpg_error_jll v1.51.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [89763e89] + Libtiff_jll v4.4.0+0 ⌃ [d3a379c0] + LittleCMS_jll v2.12.0+0 [856f044c] + MKL_jll v2025.0.1+1 [18a262bb] + OpenEXR_jll v3.2.4+0 ⌃ [643b3616] + OpenJpeg_jll v2.4.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.13.6+1 [aed1982a] + XSLT_jll v1.1.42+0 [4f6342f7] + Xorg_libX11_jll v1.8.6+3 [0c0b7dd1] + Xorg_libXau_jll v1.0.12+0 [a3789734] + Xorg_libXdmcp_jll v1.1.5+0 [1082639a] + Xorg_libXext_jll v1.3.6+3 [14d82f49] + Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.0+3 [c5fb5394] + Xorg_xtrans_jll v1.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [b53b4c65] + libpng_jll v1.6.47+0 [075b6546] + libsixel_jll v1.10.5+0 ⌃ [c5f90fcd] + libwebp_jll v1.4.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 31.61s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5499.4 ms ✓ TestEnv 1 dependency successfully precompiled in 7 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 1933.7s ################################################################################ # Testing # Testing SyntacticModels Status `/tmp/jl_OPhzCK/Project.toml` [227ef7b5] ACSets v0.2.21 [134e5e36] Catlab v0.16.19 [6f00c28b] DiagrammaticEquations v0.1.8 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.1 [d8e11817] MLStyle v0.4.17 [189a3867] Reexport v1.2.2 [856f2bd8] StructTypes v1.11.0 [22bb929c] SyntacticModels v0.2.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_OPhzCK/Manifest.toml` [227ef7b5] ACSets v0.2.21 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [23cfdc9f] AlgebraicInterfaces v0.1.4 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [e2ed5e7c] Bijections v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [aafaddc9] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given SyntacticModels was explicitly requested, output will be shown live  WARNING: Method definition (::Type{StructTypes.StructType})(Type{DiagrammaticEquations.decapodes.Equation}) in module decapodes at /home/pkgeval/.julia/packages/ACSets/7LOk7/src/intertypes/julia.jl:450 overwritten in module ASKEMDecapodes at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/decapodes.jl:46. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 77693.2 ms ? SyntacticModels WARNING: Method definition (::Type{StructTypes.StructType})(Type{DiagrammaticEquations.decapodes.Equation}) in module decapodes at /home/pkgeval/.julia/packages/ACSets/7LOk7/src/intertypes/julia.jl:450 overwritten in module ASKEMDecapodes at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/decapodes.jl:46. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition (::Type{StructTypes.StructType})(Type{DiagrammaticEquations.decapodes.Equation}) in module decapodes at /home/pkgeval/.julia/packages/ACSets/7LOk7/src/intertypes/julia.jl:450 overwritten in module ASKEMDecapodes at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/decapodes.jl:46. WARNING: Method definition subtypekey(Type{DiagrammaticEquations.decapodes.Equation}) in module decapodes at /home/pkgeval/.julia/packages/ACSets/7LOk7/src/intertypes/julia.jl:452 overwritten in module ASKEMDecapodes at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/decapodes.jl:47. WARNING: Method definition subtypes(Type{DiagrammaticEquations.decapodes.Equation}) in module decapodes at /home/pkgeval/.julia/packages/ACSets/7LOk7/src/intertypes/julia.jl:453 overwritten in module ASKEMDecapodes at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/decapodes.jl:48. WARNING: Method definition (::Type{StructTypes.StructType})(Type{DiagrammaticEquations.decapodes.Term}) in module decapodes at /home/pkgeval/.julia/packages/ACSets/7LOk7/src/intertypes/julia.jl:450 overwritten in module ASKEMDecapodes at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/decapodes.jl:50. WARNING: Method definition subtypekey(Type{DiagrammaticEquations.decapodes.Term}) in module decapodes at /home/pkgeval/.julia/packages/ACSets/7LOk7/src/intertypes/julia.jl:452 overwritten in module ASKEMDecapodes at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/decapodes.jl:51. WARNING: Method definition subtypes(Type{DiagrammaticEquations.decapodes.Term}) in module decapodes at /home/pkgeval/.julia/packages/ACSets/7LOk7/src/intertypes/julia.jl:453 overwritten in module ASKEMDecapodes at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/decapodes.jl:52. """ ASKE Model Representation: SIR0.2 :: petrinet amr-schemas:petri_schema.json The SIR Model of disease """ Model = begin LabelledPetriNet{Symbol} begin S(label=:S) S(label=:I) S(label=:R) T(label=:inf) T(label=:rec) I(is=:S,it=:inf) I(is=:I,it=:inf) I(is=:I,it=:rec) O(os=:I,it=:inf) O(os=:I,it=:inf) O(os=:R,it=:rec) end end ODE_Record = begin inf::Rate = S*I*β rec::Rate = I*γ S::Initial = S₀ I::Initial = I₀ R::Initial = R₀ # β-- the beta parameter β::Parameter{1/(persons^2*day)} = 0.01 ~ U(0.001,0.02) # γ-- the gama parameter γ::Parameter{1/(persons*day)} = 3.0 ~ U(1,200.0) # S₀-- the initial susceptible population S₀::Parameter{persons} = 3.0e8 ~ U(1.0e6,4.0e6) # I₀-- the initial infected population I₀::Parameter{persons} = 1.0 ~ U(1,1) # R₀-- the initial recovered population R₀::Parameter{persons} = 0.0 ~ U(0,4) t::Time{day} end """ ASKE Model Representation: SIR0.2 :: petrinet amr-schemas:petri_schema.json The SIR Model of disease """ Model = begin LabelledPetriNet{Symbol} begin S(label=:S) S(label=:I) S(label=:R) T(label=:inf) T(label=:rec) I(is=:S,it=:inf) I(is=:I,it=:inf) I(is=:I,it=:rec) O(os=:I,it=:inf) O(os=:I,it=:inf) O(os=:R,it=:rec) end end ODE_Equations = begin t::Time{day} # β-- the beta parameter β::Parameter{1/(persons^2*day)} = 0.01 ~ U(0.001,0.02) inf::Rate = S*I*β # γ-- the gama parameter γ::Parameter{1/(persons*day)} = 3.0 ~ U(1,200.0) rec::Rate = I*γ # S₀-- the initial susceptible population S₀::Parameter{persons} = 3.0e8 ~ U(1.0e6,4.0e6) S₀::Initial = S₀ # I₀-- the initial infected population I₀::Parameter{persons} = 1.0 ~ U(1,1) I₀::Initial = I₀ # R₀-- the initial recovered population R₀::Parameter{persons} = 0.0 ~ U(0,4) R₀::Initial = R₀ end Typing = begin Model = begin LabelledPetriNet{Symbol} begin S(label=:Pop) T(label=:inf) T(label=:disease) T(label=:strata) I(is=:Pop,it=:inf) I(is=:Pop,it=:inf) I(is=:Pop,it=:disease) I(is=:Pop,it=:strata) O(os=:Pop,it=:inf) O(os=:Pop,it=:inf) O(os=:Pop,it=:disease) O(os=:Pop,it=:strata) end end TypeMap = [ S => Pop, I => Pop, R => Pop, inf => inf, rec => disease,] end begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:182 =# @doc "ASKE Model Representation: SIR0.2 :: petrinet \n amr-schemas:petri_schema.json\n\nThe SIR Model of disease" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:191 =# Model = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:184 =# begin #= none:2 =# S(label = :S) #= none:3 =# S(label = :I) #= none:4 =# S(label = :R) #= none:5 =# T(label = :inf) #= none:6 =# T(label = :rec) #= none:7 =# I(is = :S, it = :inf) #= none:8 =# I(is = :I, it = :inf) #= none:9 =# I(is = :I, it = :rec) #= none:10 =# O(os = :I, it = :inf) #= none:11 =# O(os = :I, it = :inf) #= none:12 =# O(os = :R, it = :rec) end end #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:191 =# begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:161 =# ODE_Record = (rates = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:161 =# inf::Rate = "S*I*β" rec::Rate = "I*γ" end, initials = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:161 =# S::Initial = "S₀" I::Initial = "I₀" R::Initial = "R₀" end, parameters = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:161 =# #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "β-- the beta parameter" β::Parameter{"1/(persons^2*day)"} = (0.01 ~ U(0.001, 0.02)) #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "γ-- the gama parameter" γ::Parameter{"1/(persons*day)"} = (3.0 ~ U(1, 200.0)) #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "S₀-- the initial susceptible population" S₀::Parameter{"persons"} = (3.0e8 ~ U(1.0e6, 4.0e6)) #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "I₀-- the initial infected population" I₀::Parameter{"persons"} = (1.0 ~ U(1, 1)) #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "R₀-- the initial recovered population" R₀::Parameter{"persons"} = (0.0 ~ U(0, 4)) end, time = !time) end end #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:182 =# @doc "ASKE Model Representation: SIR0.2 :: petrinet \n amr-schemas:petri_schema.json\n\nThe SIR Model of disease" Model = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:184 =# begin #= none:2 =# S(label = :S) #= none:3 =# S(label = :I) #= none:4 =# S(label = :R) #= none:5 =# T(label = :inf) #= none:6 =# T(label = :rec) #= none:7 =# I(is = :S, it = :inf) #= none:8 =# I(is = :I, it = :inf) #= none:9 =# I(is = :I, it = :rec) #= none:10 =# O(os = :I, it = :inf) #= none:11 =# O(os = :I, it = :inf) #= none:12 =# O(os = :R, it = :rec) end end #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:161 =# t::Time{"day"} #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "β-- the beta parameter" β::Parameter{"1/(persons^2*day)"} = (0.01 ~ U(0.001, 0.02)) inf::Rate = "S*I*β" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "γ-- the gama parameter" γ::Parameter{"1/(persons*day)"} = (3.0 ~ U(1, 200.0)) rec::Rate = "I*γ" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "S₀-- the initial susceptible population" S₀::Parameter{"persons"} = (3.0e8 ~ U(1.0e6, 4.0e6)) S₀::Initial = "S₀" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "I₀-- the initial infected population" I₀::Parameter{"persons"} = (1.0 ~ U(1, 1)) I₀::Initial = "I₀" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "R₀-- the initial recovered population" R₀::Parameter{"persons"} = (0.0 ~ U(0, 4)) R₀::Initial = "R₀" begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:182 =# @doc "ASKE Model Representation: SIR0.2 :: petrinet \n amr-schemas:petri_schema.json\n\nThe SIR Model of disease" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:191 =# Model = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:184 =# begin #= none:2 =# S(label = :S) #= none:3 =# S(label = :I) #= none:4 =# S(label = :R) #= none:5 =# T(label = :inf) #= none:6 =# T(label = :rec) #= none:7 =# I(is = :S, it = :inf) #= none:8 =# I(is = :I, it = :inf) #= none:9 =# I(is = :I, it = :rec) #= none:10 =# O(os = :I, it = :inf) #= none:11 =# O(os = :I, it = :inf) #= none:12 =# O(os = :R, it = :rec) end end #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:191 =# begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:161 =# ODE_Equations = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:161 =# t::Time{"day"} #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "β-- the beta parameter" β::Parameter{"1/(persons^2*day)"} = (0.01 ~ U(0.001, 0.02)) inf::Rate = "S*I*β" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "γ-- the gama parameter" γ::Parameter{"1/(persons*day)"} = (3.0 ~ U(1, 200.0)) rec::Rate = "I*γ" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "S₀-- the initial susceptible population" S₀::Parameter{"persons"} = (3.0e8 ~ U(1.0e6, 4.0e6)) S₀::Initial = "S₀" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "I₀-- the initial infected population" I₀::Parameter{"persons"} = (1.0 ~ U(1, 1)) I₀::Initial = "I₀" #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:183 =# @doc "R₀-- the initial recovered population" R₀::Parameter{"persons"} = (0.0 ~ U(0, 4)) R₀::Initial = "R₀" end begin Typing = (Model = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:184 =# begin #= none:2 =# S(label = :Pop) #= none:3 =# T(label = :inf) #= none:4 =# T(label = :disease) #= none:5 =# T(label = :strata) #= none:6 =# I(is = :Pop, it = :inf) #= none:7 =# I(is = :Pop, it = :inf) #= none:8 =# I(is = :Pop, it = :disease) #= none:9 =# I(is = :Pop, it = :strata) #= none:10 =# O(os = :Pop, it = :inf) #= none:11 =# O(os = :Pop, it = :inf) #= none:12 =# O(os = :Pop, it = :disease) #= none:13 =# O(os = :Pop, it = :strata) end end) #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:190 =# TypeMap = begin #= /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/src/amr.jl:161 =# :S => :Pop :I => :Pop :R => :Pop :inf => :inf :rec => :disease end end end end AMRPetriNet begin S(id=S,name=Susceptible,units=person) S(id=I,name=Infected,units=person) S(id=R,name=Recovered,units=person) T(id=inf,name=Infection,desc=Infective process between individuals) T(id=rec,name=Recovery,desc=Recovery process of a infected individual) I(is=S,it=inf) I(is=I,it=inf) I(is=I,it=rec) O(os=I,ot=inf) O(os=I,ot=inf) O(os=R,ot=rec) end semantics_dict = Dict{String, Any}("ode" => Dict{String, Any}("initials" => Any[Dict{String, Any}("expression" => "S0", "expression_mathml" => "S0", "target" => "S"), Dict{String, Any}("expression" => "I0", "expression_mathml" => "I0", "target" => "I"), Dict{String, Any}("expression" => "R0", "expression_mathml" => "R0", "target" => "R")], "parameters" => Any[Dict{String, Any}("units" => Dict{String, Any}("expression" => "1/(person*day)", "expression_mathml" => "1personday"), "name" => "β", "id" => "beta", "distribution" => Dict{String, Any}("parameters" => Dict{String, Any}("minimum" => 2.6e-7, "maximum" => 2.8e-7), "type" => "StandardUniform1"), "value" => 2.7e-7, "description" => "infection rate"), Dict{String, Any}("units" => Dict{String, Any}("expression" => "1/day", "expression_mathml" => "1day"), "name" => "γ", "id" => "gamma", "grounding" => Dict{String, Any}("identifiers" => Dict{String, Any}("askemo" => "0000013")), "distribution" => Dict{String, Any}("parameters" => Dict{String, Any}("minimum" => 0.1, "maximum" => 0.18), "type" => "StandardUniform1"), "value" => 0.14, "description" => "recovery rate"), Dict{String, Any}("name" => "S₀", "id" => "S0", "value" => 1000, "description" => "Total susceptible population at timestep 0"), Dict{String, Any}("name" => "I₀", "id" => "I0", "value" => 1, "description" => "Total infected population at timestep 0"), Dict{String, Any}("name" => "R₀", "id" => "R0", "value" => 0, "description" => "Total recovered population at timestep 0")], "rates" => Any[Dict{String, Any}("expression" => "S*I*beta", "expression_mathml" => "SIbeta", "target" => "inf"), Dict{String, Any}("expression" => "I*gamma", "expression_mathml" => "Igamma", "target" => "rec")], "time" => Dict{String, Any}("units" => Dict{String, Any}("expression" => "day", "expression_mathml" => "day"), "id" => "t"), "observables" => Any[Dict{String, Any}("name" => "Non-infectious", "expression" => "S+R", "expression_mathml" => "SR", "id" => "noninf", "states" => Any["S", "R"])])) ODE_Record = begin inf::Rate = S*I*beta rec::Rate = I*gamma S::Initial = S0 I::Initial = I0 R::Initial = R0 # β-- infection rate beta::Parameter{1/(person*day)} = 2.7e-7 ~ U(0,1) # γ-- recovery rate gamma::Parameter{1/day} = 0.14 ~ U(0,1) # S₀-- Total susceptible population at timestep 0 S0::Parameter{} = 1000.0 ~ δ(missing) # I₀-- Total infected population at timestep 0 I0::Parameter{} = 1.0 ~ δ(missing) # R₀-- Total recovered population at timestep 0 R0::Parameter{} = 0.0 ~ δ(missing) t::Time{day} end Any[Dict{String, Any}("units" => Dict{String, Any}("expression" => "person", "expression_mathml" => "person"), "name" => "Susceptible", "id" => "S", "grounding" => Dict{String, Any}("identifiers" => Dict{String, Any}("ido" => "0000514")), "description" => "Number of individuals that are 'susceptible' to a disease infection"), Dict{String, Any}("units" => Dict{String, Any}("expression" => "person", "expression_mathml" => "person"), "name" => "Infected", "id" => "I", "grounding" => Dict{String, Any}("identifiers" => Dict{String, Any}("ido" => "0000511")), "description" => "Number of individuals that are 'infected' by a disease"), Dict{String, Any}("units" => Dict{String, Any}("expression" => "person", "expression_mathml" => "person"), "name" => "Recovered", "id" => "R", "grounding" => Dict{String, Any}("identifiers" => Dict{String, Any}("ido" => "0000592")), "description" => "Number of individuals that have 'recovered' from a disease infection")]""" ASKE Model Representation: SIR Model0.1 :: petrinet https://raw.githubusercontent.com/DARPA-ASKEM/Model-Representations/petrinet_v0.5/petrinet/petrinet_schema.json SIR model """ Model = begin AMRPetriNet begin S(id=S,name=Susceptible,units=person) S(id=I,name=Infected,units=person) S(id=R,name=Recovered,units=person) T(id=inf,name=Infection,desc=Infective process between individuals) T(id=rec,name=Recovery,desc=Recovery process of a infected individual) I(is=S,it=inf) I(is=I,it=inf) I(is=I,it=rec) O(os=I,ot=inf) O(os=I,ot=inf) O(os=R,ot=rec) end end ODE_Record = begin inf::Rate = S*I*beta rec::Rate = I*gamma S::Initial = S0 I::Initial = I0 R::Initial = R0 # β-- infection rate beta::Parameter{1/(person*day)} = 2.7e-7 ~ U(2.6e-7,2.8e-7) # γ-- recovery rate gamma::Parameter{1/day} = 0.14 ~ U(0.1,0.18) # S₀-- Total susceptible population at timestep 0 S0::Parameter{} = 1000.0 ~ δ(missing) # I₀-- Total infected population at timestep 0 I0::Parameter{} = 1.0 ~ δ(missing) # R₀-- Total recovered population at timestep 0 R0::Parameter{} = 0.0 ~ δ(missing) t::Time{day} end m = Any[Any["S", "Pop"], Any["I", "Pop"], Any["R", "Pop"], Any["inf", "Infect"], Any["rec", "Disease"]] Typing = begin Model = begin AMRPetriNet begin S(id=Pop,name=Pop,units=nothing) S(id=Vaccine,name=Vaccine,units=nothing) T(id=Infect,name=Infect,desc=2-to-2 process that represents infectious contact between two human individuals) T(id=Disease,name=Disease,desc=1-to-1 process that represents a change in th edisease status of a human individual.) T(id=Strata,name=Strata,desc=1-to-1 process that represents a change in the demographic division of a human individual.) T(id=Vaccinate,name=Vaccinate,desc=2-to-1 process that represents an human individual receiving a vaccine dose.) T(id=Produce_Vaccine,name=Produce Vaccine,desc=0-to-1 process that represents the production of a single vaccine dose.) I(is=Pop,it=Infect) I(is=Pop,it=Infect) I(is=Pop,it=Disease) I(is=Pop,it=Strata) I(is=Pop,it=Vaccinate) I(is=Vaccine,it=Vaccinate) O(os=Pop,ot=Infect) O(os=Pop,ot=Infect) O(os=Pop,ot=Disease) O(os=Pop,ot=Strata) O(os=Pop,ot=Vaccinate) O(os=Vaccine,ot=Produce_Vaccine) end end TypeMap = [ S => Pop, I => Pop, R => Pop, inf => Infect, rec => Disease,] end m = Any[Any["S", "Pop"], Any["I", "Pop"], Any["R", "Pop"], Any["inf", "Infect"], Any["rec", "Disease"]] """ ASKE Model Representation: SIR Model0.1 :: petrinet https://raw.githubusercontent.com/DARPA-ASKEM/Model-Representations/petrinet_v0.5/petrinet/petrinet_schema.json Typed SIR model created by Nelson, derived from the one by Ben, Micah, Brandon """ Model = begin AMRPetriNet begin S(id=S,name=Susceptible,units=nothing) S(id=I,name=Infected,units=nothing) S(id=R,name=Recovered,units=nothing) T(id=inf,name=Infection,desc=Infective process between individuals) T(id=rec,name=Recovery,desc=Recovery process of a infected individual) I(is=S,it=inf) I(is=I,it=inf) I(is=I,it=rec) O(os=I,ot=inf) O(os=I,ot=inf) O(os=R,ot=rec) end end ODE_Record = begin inf::Rate = S*I*beta rec::Rate = I*gamma S::Initial = S0 I::Initial = I0 R::Initial = R0 # β-- infection rate beta::Parameter{} = 0.027 ~ U(0.026,0.028) # γ-- recovery rate gamma::Parameter{} = 0.14 ~ U(0.1,0.18) # S₀-- Total susceptible population at timestep 0 S0::Parameter{} = 1000.0 ~ δ(missing) # I₀-- Total infected population at timestep 0 I0::Parameter{} = 1.0 ~ δ(missing) # R₀-- Total recovered population at timestep 0 R0::Parameter{} = 0.0 ~ δ(missing) t::Time{} end Typing = begin Model = begin AMRPetriNet begin S(id=Pop,name=Pop,units=nothing) S(id=Vaccine,name=Vaccine,units=nothing) T(id=Infect,name=Infect,desc=2-to-2 process that represents infectious contact between two human individuals) T(id=Disease,name=Disease,desc=1-to-1 process that represents a change in th edisease status of a human individual.) T(id=Strata,name=Strata,desc=1-to-1 process that represents a change in the demographic division of a human individual.) T(id=Vaccinate,name=Vaccinate,desc=2-to-1 process that represents an human individual receiving a vaccine dose.) T(id=Produce_Vaccine,name=Produce Vaccine,desc=0-to-1 process that represents the production of a single vaccine dose.) I(is=Pop,it=Infect) I(is=Pop,it=Infect) I(is=Pop,it=Disease) I(is=Pop,it=Strata) I(is=Pop,it=Vaccinate) I(is=Vaccine,it=Vaccinate) O(os=Pop,ot=Infect) O(os=Pop,ot=Infect) O(os=Pop,ot=Disease) O(os=Pop,ot=Strata) O(os=Pop,ot=Vaccinate) O(os=Vaccine,ot=Produce_Vaccine) end end TypeMap = [ S => Pop, I => Pop, R => Pop, inf => Infect, rec => Disease,] end ODE_Equations = begin inf::Rate = S * I * beta rec::Rate = I * gamma # β-- infection rate beta::Parameter{} = 0.027 ~ U(0,1) # γ-- recovery rate gamma::Parameter{} = 0.14 ~ U(0,1) # S₀-- Total susceptible population at timestep 0 S0::Parameter{} = 1000.0 ~ δ(missing) # I₀-- Total infected population at timestep 0 I0::Parameter{} = 1.0 ~ δ(missing) # R₀-- Total recovered population at timestep 0 R0::Parameter{} = 0.0 ~ δ(missing) t::Time{day} end begin """ ASKE Model Representation: SIR Model@0.1 :: petrinet https://raw.githubusercontent.com/DARPA-ASKEM/Model-Representations/petrinet_v0.5/petrinet/petrinet_schema.json Typed SIR model created by Nelson, derived from the one by Ben, Micah, Brandon """ Model = begin AMRPetriNet = begin S(id=S,name=Susceptible,units=nothing) S(id=I,name=Infected,units=nothing) S(id=R,name=Recovered,units=nothing) T(id=inf,name=Infection,desc="Infective process between individuals") T(id=rec,name=Recovery,desc="Recovery process of a infected individual") I(is=S,it=inf) I(is=I,it=inf) I(is=I,it=rec) O(os=I,ot=inf) O(os=I,ot=inf) O(os=R,ot=rec) end end ODE_Record = begin inf::Rate = S*I*beta rec::Rate = I*gamma S::Initial = S0 I::Initial = I0 R::Initial = R0 """ β -- infection rate """ beta::Parameter{} = 0.027 ~ U(0,1) """ γ -- recovery rate """ gamma::Parameter{} = 0.14 ~ U(0,1) """ S₀ -- Total susceptible population at timestep 0 """ S0::Parameter{} = 1000.0 ~ δ(missing) """ I₀ -- Total infected population at timestep 0""" I0::Parameter{} = 1.0 ~ δ(missing) """ R₀ -- Total recovered population at timestep 0""" R0::Parameter{} = 0.0 ~ δ(missing) t::Time{day} end Typing = begin Model = begin AMRPetriNet = begin S(id=Pop,name=Pop,units=nothing) S(id=Vaccine,name=Vaccine,units=nothing) T(id=Infect,name=Infect,desc="2-to-2 process that represents infectious contact between two human individuals.") T(id=Disease,name=Disease,desc="1-to-1 process that represents a change in th edisease status of a human individual.") T(id=Strata,name=Strata,desc="1-to-1 process that represents a change in the demographic division of a human individual.") T(id=Vaccinate,name=Vaccinate,desc="2-to-1 process that represents an human individual receiving a vaccine dose.") T(id=Produce_Vaccine,name="Produce Vaccine",desc="0-to-1 process that represents the production of a single vaccine dose.") I(is=Pop,it=Infect) I(is=Pop,it=Infect) I(is=Pop,it=Disease) I(is=Pop,it=Strata) I(is=Pop,it=Vaccinate) I(is=Vaccine,it=Vaccinate) O(os=Pop,ot=Infect) O(os=Pop,ot=Infect) O(os=Pop,ot=Disease) O(os=Pop,ot=Strata) O(os=Pop,ot=Vaccinate) O(os=Vaccine,ot=Produce_Vaccine) end end TypeMap = [ S => Pop, I => Pop, R => Pop, inf => Infect, rec => Disease,] end end """ ASKE Model Representation: SIR Model0.1 :: petrinet https://raw.githubusercontent.com/DARPA-ASKEM/Model-Representations/petrinet_v0.5/petrinet/petrinet_schema.json Typed SIR model created by Nelson, derived from the one by Ben, Micah, Brandon """ Model = begin AMRPetriNet begin S(id=S,name=Susceptible,units=nothing) S(id=I,name=Infected,units=nothing) S(id=R,name=Recovered,units=nothing) T(id=inf,name=Infection,desc=Infective process between individuals) T(id=rec,name=Recovery,desc=Recovery process of a infected individual) I(is=S,it=inf) I(is=I,it=inf) I(is=I,it=rec) O(os=I,ot=inf) O(os=I,ot=inf) O(os=R,ot=rec) end end ODE_Equations = begin inf::Rate = S * I * beta rec::Rate = I * gamma # β-- infection rate beta::Parameter{} = 0.027 ~ U(0,1) # γ-- recovery rate gamma::Parameter{} = 0.14 ~ U(0,1) # S₀-- Total susceptible population at timestep 0 S0::Parameter{} = 1000.0 ~ δ(missing) # I₀-- Total infected population at timestep 0 I0::Parameter{} = 1.0 ~ δ(missing) # R₀-- Total recovered population at timestep 0 R0::Parameter{} = 0.0 ~ δ(missing) t::Time{day} end Typing = begin Model = begin AMRPetriNet begin S(id=Pop,name=Pop,units=nothing) S(id=Vaccine,name=Vaccine,units=nothing) T(id=Infect,name=Infect,desc=2-to-2 process that represents infectious contact between two human individuals.) T(id=Disease,name=Disease,desc=1-to-1 process that represents a change in th edisease status of a human individual.) T(id=Strata,name=Strata,desc=1-to-1 process that represents a change in the demographic division of a human individual.) T(id=Vaccinate,name=Vaccinate,desc=2-to-1 process that represents an human individual receiving a vaccine dose.) T(id=Produce_Vaccine,name=Produce Vaccine,desc=0-to-1 process that represents the production of a single vaccine dose.) I(is=Pop,it=Infect) I(is=Pop,it=Infect) I(is=Pop,it=Disease) I(is=Pop,it=Strata) I(is=Pop,it=Vaccinate) I(is=Vaccine,it=Vaccinate) O(os=Pop,ot=Infect) O(os=Pop,ot=Infect) O(os=Pop,ot=Disease) O(os=Pop,ot=Strata) O(os=Pop,ot=Vaccinate) O(os=Vaccine,ot=Produce_Vaccine) end end TypeMap = [ S => Pop, I => Pop, R => Pop, inf => Infect, rec => Disease,] end Test Summary: | Pass Broken Total Time AMR Examples | 28 1 29 43.4s Test Summary: | Pass Total Time Decapodes Examples | 2 2 2m32.1s Catlab.Programs.RelationalPrograms.TypedUnnamedRelationDiagram{Symbol, Symbol, Symbol} {Box:3, Port:7, OuterPort:2, Junction:4, Type:0, Name:0, VarName:0} ┌─────┬──────┐ │ Box │ name │ ├─────┼──────┤ │ 1 │ R │ │ 2 │ S │ │ 3 │ T │ └─────┴──────┘ ┌──────┬─────┬──────────┬───────────┐ │ Port │ box │ junction │ port_type │ ├──────┼─────┼──────────┼───────────┤ │ 1 │ 1 │ 1 │ X │ │ 2 │ 1 │ 3 │ Y │ │ 3 │ 2 │ 3 │ Y │ │ 4 │ 2 │ 2 │ Z │ │ 5 │ 3 │ 2 │ Z │ │ 6 │ 3 │ 3 │ Y │ │ 7 │ 3 │ 4 │ untyped │ └──────┴─────┴──────────┴───────────┘ ┌───────────┬────────────────┬─────────────────┐ │ OuterPort │ outer_junction │ outer_port_type │ ├───────────┼────────────────┼─────────────────┤ │ 1 │ 1 │ x │ │ 2 │ 2 │ z │ └───────────┴────────────────┴─────────────────┘ ┌──────────┬───────────────┬──────────┐ │ Junction │ junction_type │ variable │ ├──────────┼───────────────┼──────────┤ │ 1 │ X │ x │ │ 2 │ Z │ z │ │ 3 │ Y │ y │ │ 4 │ untyped │ u │ └──────────┴───────────────┴──────────┘ Test Summary: | Pass Total Time UWD Examples | 13 13 1m03.7s SummationDecapode{Any, Any, Symbol} {Var:14, TVar:3, Op1:4, Op2:4, Σ:1, Summand:2, Type:0, Operator:0, Name:0} ┌─────┬───────────┬───────────────────┐ │ Var │ type │ name │ ├─────┼───────────┼───────────────────┤ │ 1 │ Form0 │ X │ │ 2 │ Form0 │ V │ │ 3 │ Constant │ oscillator_k │ │ 4 │ infer │ oscillator_mult_1 │ │ 5 │ infer │ oscillator_V̇ │ │ 6 │ Literal │ -1 │ │ 7 │ Form0 │ Q │ │ 8 │ Constant │ heating_κ │ │ 9 │ Constant │ heating_λ │ │ 10 │ Parameter │ heating_Q₀ │ │ 11 │ infer │ heating_Q̇ │ │ 12 │ infer │ heating_•2 │ │ 13 │ infer │ heating_•3 │ │ 14 │ infer │ heating_•4 │ └─────┴───────────┴───────────────────┘ ┌──────┬──────┐ │ TVar │ incl │ ├──────┼──────┤ │ 1 │ 2 │ │ 2 │ 5 │ │ 3 │ 11 │ └──────┴──────┘ ┌─────┬─────┬─────┬─────┐ │ Op1 │ src │ tgt │ op1 │ ├─────┼─────┼─────┼─────┤ │ 1 │ 1 │ 2 │ ∂ₜ │ │ 2 │ 2 │ 5 │ ∂ₜ │ │ 3 │ 7 │ 11 │ ∂ₜ │ │ 4 │ 14 │ 13 │ λ │ └─────┴─────┴─────┴─────┘ ┌─────┬───────┬───────┬─────┬─────┐ │ Op2 │ proj1 │ proj2 │ res │ op2 │ ├─────┼───────┼───────┼─────┼─────┤ │ 1 │ 6 │ 3 │ 4 │ * │ │ 2 │ 4 │ 1 │ 5 │ * │ │ 3 │ 8 │ 2 │ 12 │ * │ │ 4 │ 7 │ 10 │ 14 │ - │ └─────┴───────┴───────┴─────┴─────┘ ┌───┬─────┐ │ Σ │ sum │ ├───┼─────┤ │ 1 │ 11 │ └───┴─────┘ ┌─────────┬─────────┬───────────┐ │ Summand │ summand │ summation │ ├─────────┼─────────┼───────────┤ │ 1 │ 12 │ 1 │ │ 2 │ 13 │ 1 │ └─────────┴─────────┴───────────┘ ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1264 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm19SmallPtrSetImplBase13FindBucketForEPKv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier18verifyDominatesUseERN4llvm11InstructionEj at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier16visitInstructionERN4llvm11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier13visitCallBaseERN4llvm8CallBaseE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier13visitCallInstERN4llvm8CallInstE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier6verifyERKN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm14verifyFunctionERKNS_8FunctionEPNS_11raw_ostreamE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) verifyLLVMIR at /source/src/pipeline.cpp:847 runOnLoop at /source/src/llvm-julia-licm.cpp:348 run at /source/src/llvm-julia-licm.cpp:373 run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:740 operator() at /source/src/jitlayers.cpp:1532 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1493 [inlined] operator() at /source/src/jitlayers.cpp:1645 [inlined] addModule at /source/src/jitlayers.cpp:2104 jl_compile_codeinst_now at /source/src/jitlayers.cpp:569 _jl_compile_codeinst at /source/src/jitlayers.cpp:758 [inlined] jl_compile_codeinst_impl at /source/src/jitlayers.cpp:902 jl_compile_method_internal at /source/src/gf.c:2890 _jl_invoke at /source/src/gf.c:3351 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #_read#53 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:799 [inlined] _read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:743 [inlined] #read#52 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:740 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:734 [inlined] #_#48 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:555 [inlined] StructClosure at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:553 [inlined] applyfield at /home/pkgeval/.julia/packages/StructTypes/PaLwj/src/StructTypes.jl:875 [inlined] #read#49 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:612 read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:561 [inlined] #read#43 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:434 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:432 [inlined] #read#52 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:738 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:734 [inlined] #readarray#32 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:229 readarray at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:214 [inlined] #read#30 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:211 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:211 [inlined] #read#29 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:210 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:210 unknown function (ip: 0x7e997d141487) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #_#48 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:555 StructClosure at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:553 applyfield at /home/pkgeval/.julia/packages/StructTypes/PaLwj/src/StructTypes.jl:875 [inlined] #read#49 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:612 read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:561 [inlined] #_#48 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:555 [inlined] StructClosure at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:553 [inlined] applyfield at /home/pkgeval/.julia/packages/StructTypes/PaLwj/src/StructTypes.jl:875 [inlined] #read#49 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:612 read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:561 [inlined] #_#48 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:555 [inlined] StructClosure at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:553 [inlined] applyfield at /home/pkgeval/.julia/packages/StructTypes/PaLwj/src/StructTypes.jl:875 [inlined] #read#49 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:612 read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:561 unknown function (ip: 0x7e9955f1329d) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #_read#53 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:799 unknown function (ip: 0x7e9955f1304b) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:743 [inlined] #read#52 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:740 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:734 [inlined] #readarray#32 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:229 readarray at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:214 [inlined] #read#30 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:211 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:211 [inlined] #read#29 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:210 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:210 [inlined] #_#48 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:555 [inlined] StructClosure at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:553 [inlined] applyfield at /home/pkgeval/.julia/packages/StructTypes/PaLwj/src/StructTypes.jl:875 [inlined] #read#49 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:612 read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:561 unknown function (ip: 0x7e9955f1c428) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #_read#53 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:799 unknown function (ip: 0x7e9955f1304b) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:743 [inlined] #read#52 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:740 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:734 [inlined] #readarray#32 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:229 readarray at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:214 [inlined] #read#30 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:211 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:211 [inlined] #read#29 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:210 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:210 [inlined] #_#48 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:555 [inlined] StructClosure at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:553 [inlined] applyfield at /home/pkgeval/.julia/packages/StructTypes/PaLwj/src/StructTypes.jl:875 [inlined] #read#49 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:612 read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:561 [inlined] #read#15 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:41 read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:33 [inlined] #read#13 at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:13 [inlined] read at /home/pkgeval/.julia/packages/JSON3/ntJon/src/structs.jl:13 [inlined] #readback##0 at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/test/runtests.jl:14 [inlined] #open#326 at ./io.jl:410 open at ./io.jl:407 [inlined] readback at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/test/runtests.jl:13 readback at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/test/runtests.jl:13 unknown function (ip: 0x7e9955f0b950) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:585 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 exec_options at ./client.jl:295 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e9986cf5249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_97191.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2377 unknown function (ip: 0x73a12cba69e3) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #201 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2317 withenv at ./env.jl:265 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2138 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1996 #182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2105 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x73a12cb9c63c) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#178 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2052 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2044 unknown function (ip: 0x73a12cb8f3d1) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2302 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:460 unknown function (ip: 0x73a12cb8e5d1) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 unknown function (ip: 0x73a12cb8db08) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:148 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 unknown function (ip: 0x73a12cb83d7f) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:300 exec_options at ./client.jl:329 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x73a12e9b0249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000073a120800010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:558 _start() ╎ 1 @Base/client.jl:329 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:300 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2906 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2846 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:485 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:146 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:147 test ╎ ╎ 1 @Pkg/src/API.jl:147 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:148 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159 test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2214 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2302 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2044 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2052 #sandbox#178 ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#18… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2105 (::Pkg.Operations.var"#182#183"… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:1996 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2138 (::Pkg.Operations.var"#186#187… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265 withenv(::Pkg.Operations.var"#201… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2317 (::Pkg.Operations.var"#201#20… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2377 subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:694 wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:141 wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1199 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1187 poptask(W::Base.Intrusiv… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 [1264] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SyntacticModels/i2tmh/test/composite_models_examples.jl:128 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:326 #start_profile_listener##0 at ./Base.jl:346 jfptr_YY.start_profile_listenerYY.YY.0_111230.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 29931432 (Pool: 29929368; Big: 2064); GC: 58 PkgEval terminated after 2722.08s: test duration exceeded the time limit