Package evaluation of StochasticGene on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T03:48:54.674 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.6s ################################################################################ # Installation # Installing StochasticGene... Resolving package versions... Installed OrdinaryDiffEqRKN ─────────────────── v1.1.0 Installed HypergeometricFunctions ───────────── v0.3.28 Installed StatsFuns ─────────────────────────── v1.3.2 Installed OrdinaryDiffEqRosenbrock ──────────── v1.8.0 Installed Accessors ─────────────────────────── v0.1.42 Installed Preferences ───────────────────────── v1.4.3 Installed FFTW ──────────────────────────────── v1.8.1 Installed PDMats ────────────────────────────── v0.11.32 Installed TimerOutputs ──────────────────────── v0.5.28 Installed FastGaussQuadrature ───────────────── v1.0.2 Installed InlineStrings ─────────────────────── v1.4.3 Installed OrdinaryDiffEqSDIRK ───────────────── v1.3.0 Installed NonlinearSolve ────────────────────── v4.5.0 Installed SciMLJacobianOperators ────────────── v0.1.1 Installed OrdinaryDiffEqPRK ─────────────────── v1.1.0 Installed EnumX ─────────────────────────────── v1.0.4 Installed Polyester ─────────────────────────── v0.7.16 Installed MaybeInplace ──────────────────────── v0.1.4 Installed OrdinaryDiffEqStabilizedRK ────────── v1.1.0 Installed RecursiveArrayTools ───────────────── v3.31.1 Installed FunctionWrappers ──────────────────── v1.1.3 Installed InvertedIndices ───────────────────── v1.3.1 Installed DelimitedFiles ────────────────────── v1.9.1 Installed OrdinaryDiffEqCore ────────────────── v1.20.0 Installed StaticArrays ──────────────────────── v1.9.13 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.2.0 Installed Statistics ────────────────────────── v1.11.1 Installed OrdinaryDiffEqSSPRK ───────────────── v1.2.1 Installed IntelOpenMP_jll ───────────────────── v2025.0.4+0 Installed CodeTracking ──────────────────────── v1.3.6 Installed Missings ──────────────────────────── v1.2.0 Installed Static ────────────────────────────── v1.2.0 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed MuladdMacro ───────────────────────── v0.2.4 Installed OrdinaryDiffEqVerner ──────────────── v1.1.1 Installed FiniteDiff ────────────────────────── v2.27.0 Installed IrrationalConstants ───────────────── v0.2.4 Installed FastPower ─────────────────────────── v1.1.1 Installed ArnoldiMethod ─────────────────────── v0.4.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed SimpleUnPack ──────────────────────── v1.1.0 Installed DiffEqBase ────────────────────────── v6.167.0 Installed PtrArrays ─────────────────────────── v1.3.0 Installed DataFrames ────────────────────────── v1.7.0 Installed NonlinearSolveQuasiNewton ─────────── v1.2.0 Installed SciMLBase ─────────────────────────── v2.79.0 Installed OrdinaryDiffEqFIRK ────────────────── v1.9.0 Installed Revise ────────────────────────────── v3.7.2 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.5.0 Installed SentinelArrays ────────────────────── v1.4.8 Installed ADTypes ───────────────────────────── v1.14.0 Installed BracketingNonlinearSolve ──────────── v1.1.1 Installed SpecialFunctions ──────────────────── v2.5.0 Installed LoweredCodeUtils ──────────────────── v3.1.0 Installed LinearSolve ───────────────────────── v3.7.0 Installed NonlinearSolveSpectralMethods ─────── v1.1.0 Installed SimpleNonlinearSolve ──────────────── v2.2.0 Installed IfElse ────────────────────────────── v0.1.1 Installed StaticArraysCore ──────────────────── v1.4.3 Installed NaNMath ───────────────────────────── v1.1.2 Installed LineSearch ────────────────────────── v0.1.4 Installed WorkerUtilities ───────────────────── v1.6.1 Installed ManualMemory ──────────────────────── v0.1.8 Installed ThreadingUtilities ────────────────── v0.5.2 Installed SparseMatrixColorings ─────────────── v0.4.14 Installed TranscodingStreams ────────────────── v0.11.3 Installed LSODA_jll ─────────────────────────── v0.1.2+0 Installed NLSolversBase ─────────────────────── v7.9.0 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed WeakRefStrings ────────────────────── v1.4.2 Installed LazyArrays ────────────────────────── v2.6.1 Installed CommonSubexpressions ──────────────── v0.3.1 Installed StatsAPI ──────────────────────────── v1.7.0 Installed ExprTools ─────────────────────────── v0.1.10 Installed DataStructures ────────────────────── v0.18.22 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed Compat ────────────────────────────── v4.16.0 Installed Graphs ────────────────────────────── v1.12.0 Installed CodecZlib ─────────────────────────── v0.7.8 Installed StaticArrayInterface ──────────────── v1.8.0 Installed OrdinaryDiffEqLinear ──────────────── v1.1.0 Installed ArrayLayouts ──────────────────────── v1.11.1 Installed SciMLStructures ───────────────────── v1.7.0 Installed StatsBase ─────────────────────────── v0.34.4 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed DiffRules ─────────────────────────── v1.15.1 Installed oneTBB_jll ────────────────────────── v2022.0.0+0 Installed GenericSchur ──────────────────────── v0.5.4 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed OrdinaryDiffEqExplicitRK ──────────── v1.1.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed OrdinaryDiffEqPDIRK ───────────────── v1.3.0 Installed OrdinaryDiffEqQPRK ────────────────── v1.1.0 Installed TableTraits ───────────────────────── v1.0.1 Installed DiffResults ───────────────────────── v1.1.0 Installed PrettyTables ──────────────────────── v2.4.0 Installed Inflate ───────────────────────────── v0.1.5 Installed PositiveFactorizations ────────────── v0.2.4 Installed SciMLOperators ────────────────────── v0.3.13 Installed OrdinaryDiffEqFunctionMap ─────────── v1.1.1 Installed JuliaInterpreter ──────────────────── v0.9.42 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.2.0 Installed Parsers ───────────────────────────── v2.8.1 Installed NonlinearSolveBase ────────────────── v1.5.0 Installed Setfield ──────────────────────────── v1.1.2 Installed MKL_jll ───────────────────────────── v2025.0.1+1 Installed PooledArrays ──────────────────────── v1.4.3 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed EnzymeCore ────────────────────────── v0.8.8 Installed JLLWrappers ───────────────────────── v1.7.0 Installed ConstructionBase ──────────────────── v1.5.8 Installed NonlinearSolveFirstOrder ──────────── v1.3.0 Installed ExproniconLite ────────────────────── v0.10.14 Installed OrdinaryDiffEq ────────────────────── v6.93.0 Installed DataValueInterfaces ───────────────── v1.0.0 Installed FastClosures ──────────────────────── v0.3.2 Installed OrderedCollections ────────────────── v1.8.0 Installed OrdinaryDiffEqExponentialRK ───────── v1.4.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed ArrayInterface ────────────────────── v7.18.0 Installed ChainRulesCore ────────────────────── v1.25.1 Installed Reexport ──────────────────────────── v1.2.2 Installed OrdinaryDiffEqTsit5 ───────────────── v1.1.0 Installed LineSearches ──────────────────────── v7.3.0 Installed LogExpFunctions ───────────────────── v0.3.29 Installed PreallocationTools ────────────────── v0.4.25 Installed OrdinaryDiffEqExtrapolation ───────── v1.5.0 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed AliasTables ───────────────────────── v1.1.3 Installed CSV ───────────────────────────────── v0.10.15 Installed OrdinaryDiffEqLowStorageRK ────────── v1.3.0 Installed PackageExtensionCompat ────────────── v1.0.2 Installed MacroTools ────────────────────────── v0.5.15 Installed FFTW_jll ──────────────────────────── v3.3.10+3 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed CompositionsBase ──────────────────── v0.1.2 Installed InverseFunctions ──────────────────── v0.1.17 Installed CommonSolve ───────────────────────── v0.2.4 Installed Krylov ────────────────────────────── v0.9.10 Installed UnPack ────────────────────────────── v1.0.2 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.3.0 Installed SimpleTraits ──────────────────────── v0.9.4 Installed MultivariateStats ─────────────────── v0.10.3 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed DocStringExtensions ───────────────── v0.9.3 Installed Crayons ───────────────────────────── v4.1.1 Installed Adapt ─────────────────────────────── v4.3.0 Installed ExponentialUtilities ──────────────── v1.27.0 Installed StrideArraysCore ──────────────────── v0.5.7 Installed OrdinaryDiffEqDifferentiation ─────── v1.4.0 Installed Rmath ─────────────────────────────── v0.8.0 Installed Arpack_jll ────────────────────────── v3.5.1+1 Installed OrdinaryDiffEqBDF ─────────────────── v1.3.0 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.1.0 Installed DifferentiationInterface ──────────── v0.6.48 Installed Jieko ─────────────────────────────── v0.2.1 Installed RuntimeGeneratedFunctions ─────────── v0.5.13 Installed OrdinaryDiffEqFeagin ──────────────── v1.1.0 Installed CPUSummary ────────────────────────── v0.2.6 Installed DataAPI ───────────────────────────── v1.16.0 Installed Tables ────────────────────────────── v1.12.0 Installed Moshi ─────────────────────────────── v0.3.5 Installed VertexSafeGraphs ──────────────────── v0.2.0 Installed RecipesBase ───────────────────────── v1.3.4 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed Optim ─────────────────────────────── v1.11.0 Installed ConcreteStructs ───────────────────── v0.2.3 Installed PrecompileTools ───────────────────── v1.2.1 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed Arpack ────────────────────────────── v0.5.4 Installed FilePathsBase ─────────────────────── v0.9.24 Installed SymbolicIndexingInterface ─────────── v0.3.38 Installed QuadGK ────────────────────────────── v2.11.2 Installed FillArrays ────────────────────────── v1.13.0 Installed ForwardDiff ───────────────────────── v0.10.38 Installed OrdinaryDiffEqSymplecticRK ────────── v1.3.0 Installed OrdinaryDiffEqDefault ─────────────── v1.3.0 Installed FastBroadcast ─────────────────────── v0.3.5 Installed LSODA ─────────────────────────────── v0.7.5 Installed Requires ──────────────────────────── v1.3.1 Installed OrdinaryDiffEqNordsieck ───────────── v1.1.0 Installed Parameters ────────────────────────── v0.12.3 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.3.0 Installed SortingAlgorithms ─────────────────── v1.2.1 Installed StringManipulation ────────────────── v0.4.1 Installed Distributions ─────────────────────── v0.25.118 Installed SparseDiffTools ───────────────────── v2.24.0 Installed StochasticGene ────────────────────── v1.3.6 Installing 6 artifacts Installed artifact Rmath 121.9 KiB Installed artifact LSODA 24.9 KiB Installed artifact Arpack 147.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact FFTW 2.2 MiB Updating `~/.julia/environments/v1.12/Project.toml` [a2598c62] + StochasticGene v1.3.6 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.1.1 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v1.3.6 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase 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[731186ca] + RecursiveArrayTools v3.31.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.7.2 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.79.0 [19f34311] + SciMLJacobianOperators v0.1.1 [c0aeaf25] + SciMLOperators v0.3.13 [53ae85a6] + SciMLStructures v1.7.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.2.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [47a9eef4] + SparseDiffTools v2.24.0 [0a514795] + SparseMatrixColorings v0.4.14 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [a2598c62] + StochasticGene v1.3.6 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.38 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.28 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [19fa3120] + VertexSafeGraphs v0.2.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [f5851436] + FFTW_jll v3.3.10+3 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [aae0fff6] + LSODA_jll v0.1.2+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 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[14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 18.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6008.3 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 1833.91s ################################################################################ # Testing # Testing StochasticGene Status `/tmp/jl_jtVn4Y/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.118 [7a1cc6ca] FFTW v1.8.1 [7f56f5a3] LSODA v0.7.5 [6f286f6a] MultivariateStats v0.10.3 [429524aa] Optim v1.11.0 [1dea7af3] OrdinaryDiffEq v6.93.0 [295af30f] Revise v3.7.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [a2598c62] StochasticGene v1.3.6 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [37e2e46d] LinearAlgebra v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_jtVn4Y/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] 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[6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... StochasticGene: Test Failed at /home/pkgeval/.julia/packages/StochasticGene/EnIXf/test/runtests.jl:29 Expression: isapprox(h1, h2, rtol = 0.2) Evaluated: isapprox([8.488343735819337e-32, 3.5969762555626084e-30, 8.436097561256058e-29, 1.3952232170873594e-27, 1.7974159784791232e-26, 1.9040701995594821e-25, 1.7170401914539902e-24, 1.350700472382242e-23, 9.440451841200338e-23, 5.947138093993773e-22 … 0.004154205173372016, 0.00414600506729342, 0.004137821138219194, 0.004129653352567556, 0.004121501676773733, 0.004113366077258325, 0.004105246520446693, 0.0040971429727737225, 0.004089055400655933, 0.00408098377052821], [2.149012623871444e-6, 4.890263844779149e-7, 3.658659539827445e-7, 4.1809523185854945e-7, 1.3091965601804687e-6, 4.322934943178306e-6, 1.4218016754862589e-6, 1.5796071145190955e-6, 4.053949598592024e-7, 1.1308119539656894e-6 … 0.003552794424042064, 0.003450852729636304, 0.003417995489290646, 0.003404515595815504, 0.003434845356134573, 0.003416310502606253, 0.0034862374500085514, 0.0034331603694501803, 0.0033497535285727403, 0.0033177387815692787]; rtol = 0.2) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1294 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm11Instruction10willReturnEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) unknown function (ip: 0x6ef98ff) at (unknown file) unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Stacktrace: ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_97191.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2377 unknown function (ip: 0x761e9299e013) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #201 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2317 withenv at ./env.jl:265 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2138 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1996 #182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2105 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x761e9298902c) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#178 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2052 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2044 unknown function (ip: 0x761e92987789) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2302 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:460 unknown function (ip: 0x761e929873c1) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 unknown function (ip: 0x761e9297d048) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:148 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 unknown function (ip: 0x761e9297c14f) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:300 exec_options at ./client.jl:329 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x761e9488c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000761e86600010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:558 _start() ╎ 1 @Base/client.jl:329 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:300 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2906 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2846 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:485 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:146 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:147 test ╎ ╎ 1 @Pkg/src/API.jl:147 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:148 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159 test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2214 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2302 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2044 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2052 #sandbox#178 ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#18… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2105 (::Pkg.Operations.var"#182#183"… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:1996 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2138 (::Pkg.Operations.var"#186#187… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265 withenv(::Pkg.Operations.var"#201… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2317 (::Pkg.Operations.var"#201#20… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2377 subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:694 wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:141 wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1199 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1187 poptask(W::Base.Intrusiv… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [1294] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StochasticGene/EnIXf/test/runtests.jl:11 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 _ZN4llvm8ExpectedIPKNS_6object13Elf_Shdr_ImplINS1_7ELFTypeILNS_10endiannessE1ELb1EEEEEED2Ev at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) unknown function (ip: 0x730f5f048347) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 2000060695 (Pool: 2000059535; Big: 1160); GC: 5540 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 [1] top-level scope @ ~/.julia/packages/StochasticGene/EnIXf/test/runtests.jl:13 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/StochasticGene/EnIXf/test/runtests.jl:29 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:326 #start_profile_listener##0 at ./Base.jl:346 jfptr_YY.start_profile_listenerYY.YY.0_111230.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 29386533 (Pool: 29384777; Big: 1756); GC: 48 PkgEval terminated after 2723.99s: test duration exceeded the time limit