Package evaluation of Stheno on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T17:05:27.801 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.15s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [99985d1d] + AbstractGPs v0.5.23 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 57.22s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_h9mg4q/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.28 ⌅ [e88e6eb3] Zygote v0.6.75 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_h9mg4q/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.23 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v0.10.38 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.34 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.2.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.28 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.75 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.35+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 7918.0 ms ✓ Stheno 1 dependency successfully precompiled in 10 seconds. 80 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m41.4s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1139s / 98.4% 27.7GiB / 99.6% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 711s 63.4% 711s 19.8GiB 71.7% 19.8GiB addition 1 394s 35.2% 394s 12.0GiB 43.5% 12.0GiB Standardised Tests (correlated sum) 1 214s 19.1% 214s 6.77GiB 24.5% 6.77GiB adj_ad 9 29.8s 2.7% 3.31s 513MiB 1.8% 57.0MiB adj_fd 9 4.15s 0.4% 462ms 119MiB 0.4% 13.2MiB Standardised Tests (independent sum) 1 132s 11.8% 132s 4.97GiB 18.0% 4.97GiB adj_ad 9 18.1s 1.6% 2.01s 578MiB 2.0% 64.3MiB adj_fd 9 5.49s 0.5% 610ms 91.5MiB 0.3% 10.2MiB Correlated GPs 1 45.1s 4.0% 45.1s 243MiB 0.9% 243MiB Consistency Tests 1 19.9s 1.8% 19.9s 100MiB 0.4% 100MiB Verify mean / kernel numerically 1 3.15s 0.3% 3.15s 38.5MiB 0.1% 38.5MiB Consistency Tests 1 1.71s 0.2% 1.71s 13.6MiB 0.0% 13.6MiB product 1 149s 13.3% 149s 3.65GiB 13.2% 3.65GiB multiply by function 1 88.0s 7.9% 88.0s 2.02GiB 7.3% 2.02GiB Diff Tests 1 52.0s 4.6% 52.0s 1.55GiB 5.6% 1.55GiB adj_ad 9 21.2s 1.9% 2.35s 895MiB 3.2% 99.4MiB adj_fd 9 6.05s 0.5% 672ms 79.1MiB 0.3% 8.79MiB Consistency Tests 1 6.09s 0.5% 6.09s 95.3MiB 0.3% 95.3MiB multiply by constant 1 61.4s 5.5% 61.4s 1.62GiB 5.9% 1.62GiB Diff Tests 1 43.2s 3.9% 43.2s 1.58GiB 5.7% 1.58GiB adj_ad 9 9.22s 0.8% 1.02s 287MiB 1.0% 31.8MiB adj_fd 9 5.41s 0.5% 601ms 86.0MiB 0.3% 9.56MiB Consistency Tests 1 4.72s 0.4% 4.72s 18.8MiB 0.1% 18.8MiB GP mul errors 1 12.4ms 0.0% 12.4ms 54.2KiB 0.0% 54.2KiB compose 1 75.4s 6.7% 75.4s 2.10GiB 7.6% 2.10GiB general 1 51.6s 4.6% 51.6s 1.51GiB 5.5% 1.51GiB Diff Tests 1 44.6s 4.0% 44.6s 1.46GiB 5.3% 1.46GiB adj_ad 9 15.0s 1.3% 1.66s 732MiB 2.6% 81.3MiB adj_fd 9 5.13s 0.5% 570ms 87.9MiB 0.3% 9.77MiB Consistency Tests 1 5.50s 0.5% 5.50s 36.3MiB 0.1% 36.3MiB Stretch 1 17.7s 1.6% 17.7s 512MiB 1.8% 512MiB scalar stretch 1 16.8s 1.5% 16.8s 499MiB 1.8% 499MiB scalar input 1 15.8s 1.4% 15.8s 495MiB 1.8% 495MiB adj_fd 9 3.88s 0.3% 431ms 84.4MiB 0.3% 9.38MiB adj_ad 9 2.34s 0.2% 260ms 45.5MiB 0.2% 5.05MiB vector input 1 953ms 0.1% 953ms 3.08MiB 0.0% 3.08MiB Vector stretch 1 773ms 0.1% 773ms 10.2MiB 0.0% 10.2MiB Matrix stretch 1 124ms 0.0% 124ms 2.80MiB 0.0% 2.80MiB Shift 1 3.39s 0.3% 3.39s 36.4MiB 0.1% 36.4MiB Shift{Float64} 1 1.73s 0.2% 1.73s 23.3MiB 0.1% 23.3MiB Shift{Vector{Float64}} 1 1.66s 0.1% 1.66s 13.1MiB 0.0% 13.1MiB Select 1 1.60s 0.1% 1.60s 29.8MiB 0.1% 29.8MiB evaluation 1 705ms 0.1% 705ms 18.8MiB 0.1% 18.8MiB idx isa Vector 1 516ms 0.0% 516ms 6.96MiB 0.0% 6.96MiB idx isa Integer 1 376ms 0.0% 376ms 4.00MiB 0.0% 4.00MiB Periodic 1 1.17s 0.1% 1.17s 30.6MiB 0.1% 30.6MiB cross 1 28.7s 2.6% 28.7s 1.21GiB 4.4% 1.21GiB block arrays 1 16.7s 1.5% 16.7s 827MiB 2.9% 827MiB Stheno._collect ∘ _mortar 1 14.1s 1.3% 14.1s 714MiB 2.5% 714MiB BlockVector 1 8.08s 0.7% 8.08s 373MiB 1.3% 373MiB adj_ad 1 1.31s 0.1% 1.31s 93.6MiB 0.3% 93.6MiB adj_fd 1 687ms 0.1% 687ms 14.2MiB 0.1% 14.2MiB BlockMatrix 1 6.02s 0.5% 6.02s 341MiB 1.2% 341MiB adj_fd 1 900ms 0.1% 900ms 117MiB 0.4% 117MiB adj_ad 1 659ms 0.1% 659ms 37.4MiB 0.1% 37.4MiB fdm stuff 1 2.59s 0.2% 2.59s 113MiB 0.4% 113MiB Correctness tests 1 7.97s 0.7% 7.97s 365MiB 1.3% 365MiB Standardised Tests 1 4.03s 0.4% 4.03s 49.3MiB 0.2% 49.3MiB gp 1 202s 18.0% 202s 4.11GiB 14.9% 4.11GiB sparse gp 1 20.9s 1.9% 20.9s 349MiB 1.2% 349MiB SparseFiniteGP inference 1 15.4s 1.4% 15.4s 239MiB 0.8% 239MiB SparseFiniteGP methods 1 5.09s 0.5% 5.09s 106MiB 0.4% 106MiB SparseFiniteGP Constructors 1 398ms 0.0% 398ms 3.92MiB 0.0% 3.92MiB adj_ad 2 20.8s 1.9% 10.4s 859MiB 3.0% 429MiB gp 1 16.0s 1.4% 16.0s 227MiB 0.8% 227MiB GP 1 15.7s 1.4% 15.7s 225MiB 0.8% 225MiB independent GPs 1 273ms 0.0% 273ms 2.42MiB 0.0% 2.42MiB wrapped AbstractGP 1 12.4ms 0.0% 12.4ms 264KiB 0.0% 264KiB adj_fd 2 3.19s 0.3% 1.59s 76.2MiB 0.3% 38.1MiB derived_gp 1 153μs 0.0% 153μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 142s 12.7% 142s 2.12GiB 7.7% 2.12GiB Zygote 1 27.0s 2.4% 27.0s 0.95GiB 3.4% 0.95GiB External Consistency 1 15.1s 1.3% 15.1s 73.6MiB 0.3% 73.6MiB nested gppp 1 15.0s 1.3% 15.0s 74.2MiB 0.3% 74.2MiB split 1 643ms 0.1% 643ms 10.5MiB 0.0% 10.5MiB gppp macro 1 53.4ms 0.0% 53.4ms 527KiB 0.0% 527KiB doctests 1 58.8s 5.2% 58.8s 1.30GiB 4.7% 1.30GiB BlockData 1 7.62s 0.7% 7.62s 292MiB 1.0% 292MiB vcat(::GPPPInput...) 1 2.14s 0.2% 2.14s 101MiB 0.4% 101MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1301.26s PkgEval succeeded after 1384.1s