Package evaluation of SpineBasedRecordLinkage on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T16:13:35.991 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.25s ################################################################################ # Installation # Installing SpineBasedRecordLinkage... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [c1ccfb80] + SpineBasedRecordLinkage v0.4.2 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [336ed68f] + CSV v0.9.11 [324d7699] + CategoricalArrays v0.10.8 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [48062228] + FilePathsBase v0.9.24 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [b4d66a32] + Schemata v3.0.2 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [c1ccfb80] + SpineBasedRecordLinkage v0.4.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [88034a9c] + StringDistances v0.11.3 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [4536629a] + OpenBLAS_jll v0.3.28+3 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: SpineBasedRecordLinkage Failed to precompile SpineBasedRecordLinkage [c1ccfb80-616c-11e9-2032-47e8246e4458] to "/home/pkgeval/.julia/compiled/v1.12/SpineBasedRecordLinkage/jl_S5Skfq". ERROR: LoadError: InitError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace: [1] getsource(x::Any, buffer_in_memory::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/utils.jl:295 [2] macro expansion @ ~/.julia/packages/CSV/9LsxT/src/context.jl:324 [inlined] [3] Context @ ./none:0 [inlined] [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:0 [5] CSV.Context(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, pool::Float64, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:199 [6] CSV.Context(source::IOBuffer) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:147 [7] __init__() @ CSV ~/.julia/packages/CSV/9LsxT/src/CSV.jl:98 [8] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1295 [11] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [12] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2121 [13] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2621 [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [15] macro expansion @ ./loading.jl:2412 [inlined] [16] macro expansion @ ./lock.jl:294 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [18] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [19] invoke_in_world @ ./essentials.jl:1087 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [21] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:6 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [23] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:10 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [25] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/Schemata.jl:9 [26] include(mod::Module, _path::String) @ Base ./Base.jl:300 [27] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [28] top-level scope @ stdin:6 [29] eval(m::Module, e::Any) @ Core ./boot.jl:485 [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [31] include_string @ ./loading.jl:2856 [inlined] [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [33] _start() @ Base ./client.jl:558 during initialization of module CSV in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/Schemata.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Schemata [b4d66a32-c6c0-5461-b6fa-34bb9cecaf85] to "/home/pkgeval/.julia/compiled/v1.12/Schemata/jl_Edci2d". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/unexported/config.jl:6 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [21] top-level scope @ ~/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/SpineBasedRecordLinkage.jl:7 [22] include(mod::Module, _path::String) @ Base ./Base.jl:300 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [24] top-level scope @ stdin:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:485 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [29] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/unexported/config.jl:1 in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/SpineBasedRecordLinkage.jl:1 in expression starting at stdin:6 Schemata Failed to precompile Schemata [b4d66a32-c6c0-5461-b6fa-34bb9cecaf85] to "/home/pkgeval/.julia/compiled/v1.12/Schemata/jl_UW6v4u". ERROR: LoadError: InitError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace: [1] getsource(x::Any, buffer_in_memory::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/utils.jl:295 [2] macro expansion @ ~/.julia/packages/CSV/9LsxT/src/context.jl:324 [inlined] [3] Context @ ./none:0 [inlined] [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:0 [5] CSV.Context(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, pool::Float64, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:199 [6] CSV.Context(source::IOBuffer) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:147 [7] __init__() @ CSV ~/.julia/packages/CSV/9LsxT/src/CSV.jl:98 [8] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Bool; register::Bool) @ Base ./loading.jl:1295 [11] _include_from_serialized @ ./loading.jl:1246 [inlined] [12] _tryrequire_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing) @ Base ./loading.jl:2009 [13] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2688 [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [15] macro expansion @ ./loading.jl:2412 [inlined] [16] macro expansion @ ./lock.jl:294 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [18] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [19] invoke_in_world @ ./essentials.jl:1087 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [21] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:6 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [23] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:10 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [25] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/Schemata.jl:9 [26] include(mod::Module, _path::String) @ Base ./Base.jl:300 [27] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [28] top-level scope @ stdin:6 [29] eval(m::Module, e::Any) @ Core ./boot.jl:485 [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [31] include_string @ ./loading.jl:2856 [inlined] [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [33] _start() @ Base ./client.jl:558 during initialization of module CSV in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/Schemata.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 216.79s ################################################################################ # Testing # Testing SpineBasedRecordLinkage Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_KsezGh/Project.toml` ⌅ [336ed68f] ↑ CSV v0.9.2 ⇒ v0.9.11 [a93c6f00] ↑ DataFrames v1.2.2 ⇒ v1.7.0 [c1ccfb80] + SpineBasedRecordLinkage v0.4.2 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_KsezGh/Manifest.toml` ⌅ [336ed68f] ↑ CSV v0.9.2 ⇒ v0.9.11 [324d7699] ↑ CategoricalArrays v0.10.0 ⇒ v0.10.8 [944b1d66] ↑ CodecZlib v0.7.0 ⇒ v0.7.8 [34da2185] ↑ Compat v3.37.0 ⇒ v4.16.0 [a8cc5b0e] ↑ Crayons v4.0.4 ⇒ v4.1.1 [9a962f9c] ↑ DataAPI v1.8.0 ⇒ v1.16.0 [a93c6f00] ↑ DataFrames v1.2.2 ⇒ v1.7.0 [864edb3b] ↑ DataStructures v0.18.10 ⇒ v0.18.22 [8bb1440f] - DelimitedFiles [b4f34e82] + Distances v0.10.12 [48062228] ↑ FilePathsBase v0.9.10 ⇒ v0.9.24 [59287772] - Formatting v0.4.2 [842dd82b] + InlineStrings v1.4.3 [41ab1584] ↑ InvertedIndices v1.1.0 ⇒ v1.3.1 [682c06a0] - JSON v0.21.2 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] ↑ Missings v1.0.2 ⇒ v1.2.0 [bac558e1] ↑ OrderedCollections v1.4.1 ⇒ v1.8.0 [69de0a69] ↑ Parsers v2.0.3 ⇒ v2.8.1 [2dfb63ee] ↑ PooledArrays v1.3.0 ⇒ v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] ↑ PrettyTables v1.1.0 ⇒ v2.4.0 [3cdcf5f2] - RecipesBase v1.1.2 [ae029012] + Requires v1.3.1 [91c51154] ↑ SentinelArrays v1.3.7 ⇒ v1.4.8 [a2af1166] ↑ SortingAlgorithms v1.0.1 ⇒ v1.2.1 [c1ccfb80] + SpineBasedRecordLinkage v0.4.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [88034a9c] + StringDistances v0.11.3 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] - StructTypes v1.7.3 [bd369af6] ↑ Tables v1.5.2 ⇒ v1.12.0 [3bb67fe8] ↑ TranscodingStreams v0.9.6 ⇒ v0.11.3 [ea10d353] ↑ WeakRefStrings v1.3.0 ⇒ v1.4.2 [0dad84c5] - ArgTools [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] - Distributed [f43a241f] - Downloads [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] - LibCURL [76f85450] - LibGit2 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] - NetworkOptions [44cfe95a] - Pkg [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] - REPL [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ~ SHA ⇒ v0.7.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] - SharedArrays [6462fe0b] - Sockets [2f01184e] - SparseArrays [f489334b] + StyledStrings v1.11.0 [fa267f1f] ~ TOML ⇒ v1.0.3 [a4e569a6] - Tar [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] - LibCURL_jll [29816b5a] - LibSSH2_jll [c8ffd9c3] - MbedTLS_jll [14a3606d] - MozillaCACerts_jll [4536629a] + OpenBLAS_jll v0.3.28+3 [83775a58] ~ Zlib_jll ⇒ v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] - nghttp2_jll [3f19e933] - p7zip_jll Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_KsezGh/Project.toml` ⌅ [336ed68f] CSV v0.9.11 [a93c6f00] DataFrames v1.7.0 [b4d66a32] Schemata v3.0.2 [c1ccfb80] SpineBasedRecordLinkage v0.4.2 [8dfed614] Test v1.11.0 Status `/tmp/jl_KsezGh/Manifest.toml` ⌅ [336ed68f] CSV v0.9.11 [324d7699] CategoricalArrays v0.10.8 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [48062228] FilePathsBase v0.9.24 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [b964fa9f] LaTeXStrings v1.4.0 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [b4d66a32] Schemata v3.0.2 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.1 [c1ccfb80] SpineBasedRecordLinkage v0.4.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [88034a9c] StringDistances v0.11.3 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [4536629a] OpenBLAS_jll v0.3.28+3 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ Schemata Info Given SpineBasedRecordLinkage was explicitly requested, output will be shown live  ERROR: LoadError: InitError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace:  [1] getsource(x::Any, buffer_in_memory::Bool)  @ CSV ~/.julia/packages/CSV/9LsxT/src/utils.jl:295  [2] macro expansion  @ ~/.julia/packages/CSV/9LsxT/src/context.jl:324 [inlined]  [3] Context  @ ./none:0 [inlined]  [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg)  @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:0  [5] CSV.Context(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, pool::Float64, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool)  @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:199  [6] CSV.Context(source::IOBuffer)  @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:147  [7] __init__()  @ CSV ~/.julia/packages/CSV/9LsxT/src/CSV.jl:98  [8] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1419  [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1407  [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)  @ Base ./loading.jl:1295  [11] _include_from_serialized (repeats 2 times)  @ ./loading.jl:1246 [inlined]  [12] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2121  [13] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2621  [14] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2484  [15] macro expansion  @ ./loading.jl:2412 [inlined]  [16] macro expansion  @ ./lock.jl:294 [inlined]  [17] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2369  [18] #invoke_in_world#2  @ ./essentials.jl:1091 [inlined]  [19] invoke_in_world  @ ./essentials.jl:1087 [inlined]  [20] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2361  [21] top-level scope  @ ~/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:6  [22] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:301  [23] top-level scope  @ ~/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:10  [24] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:301  [25] top-level scope  @ ~/.julia/packages/Schemata/fWoTd/src/Schemata.jl:9  [26] include(mod::Module, _path::String)  @ Base ./Base.jl:300  [27] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2995  [28] top-level scope  @ stdin:6  [29] eval(m::Module, e::Any)  @ Core ./boot.jl:485  [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [31] include_string  @ ./loading.jl:2856 [inlined]  [32] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:327  [33] _start()  @ Base ./client.jl:558 during initialization of module CSV in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/Schemata.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Schemata [b4d66a32-c6c0-5461-b6fa-34bb9cecaf85] to "/home/pkgeval/.julia/compiled/v1.12/Schemata/jl_yEztkQ". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3279  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2673  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114  [7] #invokelatest#1  @ ./essentials.jl:1058 [inlined]  [8] invokelatest  @ ./essentials.jl:1052 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3850  [10] maybe_cachefile_lock  @ ./loading.jl:3847 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2659  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2484  [13] macro expansion  @ ./loading.jl:2412 [inlined]  [14] macro expansion  @ ./lock.jl:294 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2369  [16] #invoke_in_world#2  @ ./essentials.jl:1091 [inlined]  [17] invoke_in_world  @ ./essentials.jl:1087 [inlined]  [18] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2361  [19] top-level scope  @ ~/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/unexported/config.jl:6  [20] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:301  [21] top-level scope  @ ~/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/SpineBasedRecordLinkage.jl:7  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:300  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2995  [24] top-level scope  @ stdin:6  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:485  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [27] include_string  @ ./loading.jl:2856 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:327  [29] _start()  @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/unexported/config.jl:1 in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/SpineBasedRecordLinkage.jl:1 in expression starting at stdin:6 ✗ SpineBasedRecordLinkage 0 dependencies successfully precompiled in 51 seconds. 52 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: SpineBasedRecordLinkage Failed to precompile SpineBasedRecordLinkage [c1ccfb80-616c-11e9-2032-47e8246e4458] to "/home/pkgeval/.julia/compiled/v1.12/SpineBasedRecordLinkage/jl_yVZCuD". ERROR: LoadError: InitError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace: [1] getsource(x::Any, buffer_in_memory::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/utils.jl:295 [2] macro expansion @ ~/.julia/packages/CSV/9LsxT/src/context.jl:324 [inlined] [3] Context @ ./none:0 [inlined] [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:0 [5] CSV.Context(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, pool::Float64, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:199 [6] CSV.Context(source::IOBuffer) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:147 [7] __init__() @ CSV ~/.julia/packages/CSV/9LsxT/src/CSV.jl:98 [8] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1295 [11] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [12] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2121 [13] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2621 [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [15] macro expansion @ ./loading.jl:2412 [inlined] [16] macro expansion @ ./lock.jl:294 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [18] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [19] invoke_in_world @ ./essentials.jl:1087 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [21] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:6 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [23] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:10 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [25] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/Schemata.jl:9 [26] include(mod::Module, _path::String) @ Base ./Base.jl:300 [27] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [28] top-level scope @ stdin:6 [29] eval(m::Module, e::Any) @ Core ./boot.jl:485 [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [31] include_string @ ./loading.jl:2856 [inlined] [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [33] _start() @ Base ./client.jl:558 during initialization of module CSV in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/Schemata.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Schemata [b4d66a32-c6c0-5461-b6fa-34bb9cecaf85] to "/home/pkgeval/.julia/compiled/v1.12/Schemata/jl_yEztkQ". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/unexported/config.jl:6 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [21] top-level scope @ ~/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/SpineBasedRecordLinkage.jl:7 [22] include(mod::Module, _path::String) @ Base ./Base.jl:300 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [24] top-level scope @ stdin:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:485 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [29] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/unexported/config.jl:1 in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/SpineBasedRecordLinkage.jl:1 in expression starting at stdin:6 Schemata Failed to precompile Schemata [b4d66a32-c6c0-5461-b6fa-34bb9cecaf85] to "/home/pkgeval/.julia/compiled/v1.12/Schemata/jl_8F7pyH". ERROR: LoadError: InitError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace: [1] getsource(x::Any, buffer_in_memory::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/utils.jl:295 [2] macro expansion @ ~/.julia/packages/CSV/9LsxT/src/context.jl:324 [inlined] [3] Context @ ./none:0 [inlined] [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:0 [5] CSV.Context(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, pool::Float64, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:199 [6] CSV.Context(source::IOBuffer) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:147 [7] __init__() @ CSV ~/.julia/packages/CSV/9LsxT/src/CSV.jl:98 [8] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1295 [11] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [12] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2121 [13] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2621 [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [15] macro expansion @ ./loading.jl:2412 [inlined] [16] macro expansion @ ./lock.jl:294 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [18] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [19] invoke_in_world @ ./essentials.jl:1087 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [21] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:6 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [23] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:10 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [25] top-level scope @ ~/.julia/packages/Schemata/fWoTd/src/Schemata.jl:9 [26] include(mod::Module, _path::String) @ Base ./Base.jl:300 [27] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [28] top-level scope @ stdin:6 [29] eval(m::Module, e::Any) @ Core ./boot.jl:485 [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [31] include_string @ ./loading.jl:2856 [inlined] [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [33] _start() @ Base ./client.jl:558 during initialization of module CSV in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:1 in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/Schemata.jl:1 in expression starting at stdin:6 in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/test/runtests.jl:2 Testing failed after 59.48s ERROR: LoadError: Package SpineBasedRecordLinkage errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 303.11s: package fails to precompile