Package evaluation of SnpArrays on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T20:57:49.551 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.59s ################################################################################ # Installation # Installing SnpArrays... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [4e780e97] + SnpArrays v0.3.22 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 ⌅ [67c07d97] + Automa v0.8.4 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.3 [48062228] + FilePathsBase v0.9.24 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.171 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [91c51154] + SentinelArrays v1.4.8 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.6 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 2.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: CUDA Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.12/CUDA/jl_BVQ5V4". ERROR: LoadError: UndefVarError: `collectinvokes!` not defined in `Compiler` Stacktrace: [1] getproperty @ ./Base_compiler.jl:47 [inlined] [2] ci_cache_populate(interp::GPUCompiler.GPUInterpreter, cache::Compiler.WorldView{Compiler.InternalCodeCache}, mi::Core.MethodInstance, min_world::UInt64, max_world::UInt64) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/jlgen.jl:504 [3] compile_method_instance(job::GPUCompiler.CompilerJob) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/jlgen.jl:597 [4] irgen(job::GPUCompiler.CompilerJob) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/irgen.jl:4 [5] emit_llvm(job::GPUCompiler.CompilerJob; toplevel::Bool, libraries::Bool, optimize::Bool, cleanup::Bool, validate::Bool, only_entry::Bool) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:171 [6] emit_llvm @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:159 [inlined] [7] #codegen#110 @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:100 [inlined] [8] codegen @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:82 [inlined] [9] compile(target::Symbol, job::GPUCompiler.CompilerJob; kwargs::@Kwargs{libraries::Bool}) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:79 [10] compile @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:74 [inlined] [11] #184 @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:35 [inlined] [12] JuliaContext(f::GPUCompiler.var"#184#185"{GPUCompiler.CompilerJob{GPUCompiler.NativeCompilerTarget, GPUCompiler.var"##455".DummyCompilerParams}}; kwargs::@Kwargs{}) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:34 [13] JuliaContext(f::Function) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:25 [14] macro expansion @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:32 [inlined] [15] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [16] macro expansion @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:25 [inlined] [17] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [18] top-level scope @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:139 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [20] top-level scope @ ~/.julia/packages/GPUCompiler/OGnEB/src/GPUCompiler.jl:51 [21] include(mod::Module, _path::String) @ Base ./Base.jl:300 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:485 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [28] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/OGnEB/src/GPUCompiler.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile GPUCompiler [61eb1bfa-7361-4325-ad38-22787b887f55] to "/home/pkgeval/.julia/compiled/v1.12/GPUCompiler/jl_mIa2ip". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/CUDA/RQqFT/src/CUDA.jl:3 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/CUDA/RQqFT/src/CUDA.jl:1 in expression starting at stdin:6 SpecialFunctionsExt Failed to precompile SpecialFunctionsExt [1285c0f1-ff9f-5867-b66e-0f359bcf09ba] to "/home/pkgeval/.julia/compiled/v1.12/SpecialFunctionsExt/jl_oRHUb1". ERROR: LoadError: UndefVarError: `collectinvokes!` not defined in `Compiler` Stacktrace: [1] getproperty @ ./Base_compiler.jl:47 [inlined] [2] ci_cache_populate(interp::GPUCompiler.GPUInterpreter, cache::Compiler.WorldView{Compiler.InternalCodeCache}, mi::Core.MethodInstance, min_world::UInt64, max_world::UInt64) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/jlgen.jl:504 [3] compile_method_instance(job::GPUCompiler.CompilerJob) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/jlgen.jl:597 [4] irgen(job::GPUCompiler.CompilerJob) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/irgen.jl:4 [5] emit_llvm(job::GPUCompiler.CompilerJob; toplevel::Bool, libraries::Bool, optimize::Bool, cleanup::Bool, validate::Bool, only_entry::Bool) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:171 [6] emit_llvm @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:159 [inlined] [7] #codegen#110 @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:100 [inlined] [8] codegen @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:82 [inlined] [9] compile(target::Symbol, job::GPUCompiler.CompilerJob; kwargs::@Kwargs{libraries::Bool}) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:79 [10] compile @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:74 [inlined] [11] #184 @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:35 [inlined] [12] JuliaContext(f::GPUCompiler.var"#184#185"{GPUCompiler.CompilerJob{GPUCompiler.NativeCompilerTarget, GPUCompiler.var"##455".DummyCompilerParams}}; kwargs::@Kwargs{}) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:34 [13] JuliaContext(f::Function) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:25 [14] macro expansion @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:32 [inlined] [15] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [16] macro expansion @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:25 [inlined] [17] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [18] top-level scope @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:139 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [20] top-level scope @ ~/.julia/packages/GPUCompiler/OGnEB/src/GPUCompiler.jl:51 [21] include(mod::Module, _path::String) @ Base ./Base.jl:300 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:485 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [28] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/OGnEB/src/GPUCompiler.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile GPUCompiler [61eb1bfa-7361-4325-ad38-22787b887f55] to "/home/pkgeval/.julia/compiled/v1.12/GPUCompiler/jl_N02NXp". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/CUDA/RQqFT/src/CUDA.jl:3 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/CUDA/RQqFT/src/CUDA.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.12/CUDA/jl_CwVIOM". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/CUDA/RQqFT/ext/SpecialFunctionsExt.jl:5 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/CUDA/RQqFT/ext/SpecialFunctionsExt.jl:3 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 487.66s ################################################################################ # Testing # Testing SnpArrays Status `/tmp/jl_VpGmTi/Project.toml` [79e6a3ab] Adapt v4.3.0 [336ed68f] CSV v0.10.15 [052768ef] CUDA v5.7.1 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [c27321d9] Glob v1.3.1 [bdcacae8] LoopVectorization v0.12.171 [e1d29d7a] Missings v1.2.0 [ae029012] Requires v1.3.1 [4e780e97] SnpArrays v0.3.22 [276daf66] SpecialFunctions v2.5.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [bd369af6] Tables v1.12.0 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [28eba6e3] VariantCallFormat v0.5.6 [3d5dd08c] VectorizationBase v0.21.71 [37e2e46d] LinearAlgebra v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_VpGmTi/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 ⌅ [67c07d97] Automa v0.8.4 [ab4f0b2a] BFloat16s v0.5.0 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [052768ef] CUDA v5.7.1 [1af6417a] CUDA_Runtime_Discovery v0.3.5 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [3da002f7] ColorTypes v0.12.0 [5ae59095] Colors v0.13.0 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.3 [e2ba6199] ExprTools v0.1.10 [48062228] FilePathsBase v0.9.24 [53c48c17] FixedPointNumbers v0.8.5 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.2.0 [096a3bc2] GPUToolbox v0.2.0 [c27321d9] Glob v1.3.1 [076d061b] HashArrayMappedTries v0.2.0 [3e5b6fbb] HostCPUFeatures v0.1.17 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [63c18a36] KernelAbstractions v0.9.34 [929cbde3] LLVM v9.2.0 [8b046642] LLVMLoopInfo v1.0.0 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.171 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [5da4648a] NVTX v1.0.0 [6fe1bfb0] OffsetArrays v1.16.0 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [74087812] Random123 v1.7.0 [e6cf234a] RandomNumbers v1.6.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [4e780e97] SnpArrays v0.3.22 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.28 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [28eba6e3] VariantCallFormat v0.5.6 [3d5dd08c] VectorizationBase v0.21.71 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [4ee394cb] CUDA_Driver_jll v0.12.1+1 [76a88914] CUDA_Runtime_jll v0.16.1+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] LLVMExtra_jll v0.0.35+0 [e98f9f5b] NVTX_jll v3.1.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [ffd25f8a] XZ_jll v5.6.4+1 [3161d3a3] Zstd_jll v1.5.7+1 [1e29f10c] demumble_jll v1.3.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time size | 8 8 2.4s Test Summary: | Pass Total Time counts | 10 10 2.2s Test Summary: | Pass Total Time means | 33 33 2.5s Test Summary: | Pass Total Time var/std | 10 10 2.5s Test Summary: | Pass Total Time missingpos | 3 3 3.1s Test Summary: | Pass Total Time create bed | 4 4 1.4s Test Summary: | Pass Total Time convert | 12 12 3.4s Test Summary: | Pass Total Time convert (ADMIXTURE) | 3 3 0.0s Test Summary: | Pass Total Time maf | 4 4 2.3s convert genotype: 1.00 seconds Φ = GG': 0.38 seconds convert G to {0,1} matrix: 0.04 seconds S = GG': 0.38 seconds Test Summary: | Pass Total Time grm | 11 11 13.6s Test Summary: | Pass Total Time filter | 8 8 12.6s ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 Test Summary: | Pass Total Time SnpBitMatrix-vector multiplication | 48 48 1m10.7s ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 Test Summary: | Pass Total Time copyto bitmatrix | 36 36 19.6s ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 Test Summary: | Pass Total Time convert (SnpBitMatrix) | 24 24 18.5s Test Summary: | Pass Total Time copyto SnpLinAlg | 36 36 15.9s Test Summary: | Pass Total Time convert (SnpLinAlg) | 24 24 13.4s WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_ax_additive!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _turbo_!(Base.Val{var"#UNROLL#"}, Base.Val{var"#OPS#"}, Base.Val{var"#ARF#"}, Base.Val{var"#AM#"}, Base.Val{var"#LPSYM#"}, Base.Val{Tuple{var"#LB#", var"#V#"}}, Vararg{Any, var"#num#vargs#"}) where {var"#UNROLL#", var"#OPS#", var"#ARF#", var"#AM#", var"#LPSYM#", var"#LB#", var"#V#", var"#num#vargs#"} at /home/pkgeval/.julia/packages/LoopVectorization/tIJUA/src/reconstruct_loopset.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_additive!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_ax_dominant!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_dominant!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_ax_recessive!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_recessive!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl Test Summary: | Pass Total Time SnpLinAlg-vector multiplication (zeroimpute) | 48 48 2m12.8s WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_additive!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_additive_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_additive!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_additive_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_dominant!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_dominant_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_dominant!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_dominant_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_recessive!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_recessive_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_recessive!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_recessive_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl Test Summary: | Pass Total Time SnpLinAlg-matrix multiplication zeroimpute | 48 48 53.1s WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in (::SnpArrays.var"#_snparray_ax_tile!##0#_snparray_ax_tile!##1"{c, A, b, μ, hstep, vstep, n, m})() at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_ax_additive_meanimpute!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl Test Summary: | Pass Total Time SnpLinAlg-vector multiplication (Miter > 0) | 1 1 14.0s WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_additive_meanimpute!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_additive_meanimpute_rem!(Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_ax_dominant_meanimpute!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_dominant_meanimpute!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_dominant_meanimpute_rem!(Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_ax_recessive_meanimpute!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_recessive_meanimpute!(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_atx_recessive_meanimpute_rem!(Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl Test Summary: | Pass Total Time SnpLinAlg-vector multiplication meanimpute | 48 48 1m19.6s WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_additive_meanimpute!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_additive_meanimpute_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_additive_meanimpute!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_additive_meanimpute_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_dominant_meanimpute!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_dominant_meanimpute_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_dominant_meanimpute!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_dominant_meanimpute_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_recessive_meanimpute!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AX_recessive_meanimpute_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_recessive_meanimpute!(Any, Any, Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _snparray_AtX_recessive_meanimpute_rem!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/linalg_direct.jl Test Summary: | Pass Total Time SnpLinAlg-matrix multiplication meanimpute | 48 48 48.5s ┌ Warning: `SnpBitMatrix{T}` is deprecated and will be removed soon. Please use `SnpLinAlg{T}` instead. │ caller = ip:0x0 └ @ Core :-1 Test Summary: | Pass Total Time subarrays | 4 4 5.1s 0.603944 seconds (276.07 k allocations: 14.534 MiB, 95.16% compilation time) 6.042045 seconds (926.33 k allocations: 46.999 MiB, 99.86% compilation time: 9% of which was recompilation) 0.201865 seconds (70.72 k allocations: 3.753 MiB, 99.69% compilation time) 0.119321 seconds (54.16 k allocations: 3.397 MiB, 99.45% compilation time) 12.912139 seconds (6.69 M allocations: 342.589 MiB, 0.85% gc time, 97.62% compilation time: 5% of which was recompilation) Test Summary: | Pass Total Time split-merge-readwrite | 20 20 1m13.5s 0.275710 seconds 0.264535 seconds 0.275805 seconds 0.287984 seconds 0.285086 seconds 0.296653 seconds 0.286516 seconds 0.278851 seconds 0.262501 seconds 0.271063 seconds 0.301054 seconds 0.283303 seconds Test Summary: | Pass Total Time (de)compress | 61 61 15.1s Test Summary: | Pass Total Time indexin | 3 3 3.3s Test Summary: | Pass Total Time concat | 9 9 13.2s reorder: Error During Test at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/test/runtests.jl:707 Got exception outside of a @test SystemError: opening file "mouse_testreorder.bed": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Bool, write::Bool, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:317 [3] open @ ./iostream.jl:296 [inlined] [4] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:380 [5] open @ ./iostream.jl:379 [inlined] [6] makestream(filepath::String, args::String; kwargs::@Kwargs{}) @ SnpArrays ~/.julia/packages/SnpArrays/CSYLc/src/codec.jl:9 [7] makestream(filepath::String, args::String) @ SnpArrays ~/.julia/packages/SnpArrays/CSYLc/src/codec.jl:8 [8] makestream(::SnpArrays.var"#8#9"{String}, ::String, ::Vararg{String}) @ SnpArrays ~/.julia/packages/SnpArrays/CSYLc/src/codec.jl:29 [9] SnpArray(bednm::String, m::Int64, args::String; kwargs::@Kwargs{}) @ SnpArrays ~/.julia/packages/SnpArrays/CSYLc/src/snparray.jl:35 [10] SnpArray @ ~/.julia/packages/SnpArrays/CSYLc/src/snparray.jl:33 [inlined] [11] SnpArray(bednm::String, args::String; famnm::String, kwargs::@Kwargs{}) @ SnpArrays ~/.julia/packages/SnpArrays/CSYLc/src/snparray.jl:67 [12] SnpArray @ ~/.julia/packages/SnpArrays/CSYLc/src/snparray.jl:50 [inlined] [13] SnpData(plink_file::String, args::String; famnm::String, bimnm::String, kwargs::@Kwargs{}) @ SnpArrays ~/.julia/packages/SnpArrays/CSYLc/src/snpdata.jl:39 [14] SnpData(plink_file::String, args::String) @ SnpArrays ~/.julia/packages/SnpArrays/CSYLc/src/snpdata.jl:21 [15] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/test/runtests.jl:708 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [17] macro expansion @ ~/.julia/packages/SnpArrays/CSYLc/test/runtests.jl:714 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [19] top-level scope @ none:6 [20] eval(m::Module, e::Any) @ Core ./boot.jl:485 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [22] _start() @ Base ./client.jl:558 Test Summary: | Error Total Time reorder | 1 1 3.5s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/test/runtests.jl:707 Testing failed after 663.27s ERROR: LoadError: Package SnpArrays errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1185.7s: package fails to precompile