Package evaluation of SimSearchManifoldLearning on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T20:58:36.371


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.7s


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# Installation
#

Installing SimSearchManifoldLearning...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [ca7ab67e] + SimSearchManifoldLearning v0.2.10
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.18.0
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] + CPUSummary v0.2.6
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [861a8166] + Combinatorics v1.0.2
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [187b0558] + ConstructionBase v1.5.8
  [adafc99b] + CpuId v0.3.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.6.48
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.118
  [ffbed154] + DocStringExtensions v0.9.3
  [5789e2e9] + FileIO v1.17.0
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
  [f6369f11] + ForwardDiff v0.10.38
  [86223c79] + Graphs v1.12.0
  [3e5b6fbb] + HostCPUFeatures v0.1.17
  [34004b35] + HypergeometricFunctions v0.3.28
  [615f187c] + IfElse v0.1.1
  [d25df0c9] + Inflate v0.1.5
  [92d709cd] + IrrationalConstants v0.2.4
⌅ [033835bb] + JLD2 v0.4.54
  [692b3bcd] + JLLWrappers v1.7.0
  [10f19ff3] + LayoutPointers v0.1.17
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [bdcacae8] + LoopVectorization v0.12.171
⌅ [2fda8390] + LsqFit v0.12.1
  [1914dd2f] + MacroTools v0.5.15
  [06eb3307] + ManifoldLearning v0.9.0
  [d125e4d3] + ManualMemory v0.1.8
  [e1d29d7a] + Missings v1.2.0
⌅ [6f286f6a] + MultivariateStats v0.9.0
  [d41bc354] + NLSolversBase v7.9.0
  [77ba4419] + NaNMath v1.1.2
  [6fe1bfb0] + OffsetArrays v1.16.0
  [87e2bd06] + OptimBase v2.0.2
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.32
  [d96e819e] + Parameters v0.12.3
  [f517fe37] + Polyester v0.7.16
  [1d0040c9] + PolyesterWeave v0.2.2
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
⌅ [0e966ebe] + SearchModels v0.3.3
  [efcf1570] + Setfield v1.1.2
  [ca7ab67e] + SimSearchManifoldLearning v0.2.10
⌅ [053f045d] + SimilaritySearch v0.11.10
  [699a6c99] + SimpleTraits v0.9.4
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [aedffcd0] + Static v1.2.0
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.3.2
  [7792a7ef] + StrideArraysCore v0.5.7
  [8290d209] + ThreadingUtilities v0.5.2
  [3bb67fe8] + TranscodingStreams v0.11.3
  [3a884ed6] + UnPack v1.0.2
  [3d5dd08c] + VectorizationBase v0.21.71
⌅ [68821587] + Arpack_jll v3.5.1+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
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  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
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  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
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  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
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  [56ddb016] + Logging v1.11.0
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  [a63ad114] + Mmap v1.11.0
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  [2f01184e] + SparseArrays v1.12.0
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  [c8ffd9c3] + MbedTLS_jll v2.28.6+1
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  [4536629a] + OpenBLAS_jll v0.3.28+3
  [05823500] + OpenLibm_jll v0.8.1+3
  [bea87d4a] + SuiteSparse_jll v7.8.0+1
  [83775a58] + Zlib_jll v1.3.1+1
  [8e850b90] + libblastrampoline_jll v5.11.2+0
  [8e850ede] + nghttp2_jll v1.63.0+1
  [3f19e933] + p7zip_jll v17.5.0+1
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.05s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 467.54s


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# Testing
#

     Testing SimSearchManifoldLearning
      Status `/tmp/jl_ANI0FC/Project.toml`
  [7d9fca2a] Arpack v0.5.4
  [b4f34e82] Distances v0.10.12
⌅ [2fda8390] LsqFit v0.12.1
  [06eb3307] ManifoldLearning v0.9.0
  [f517fe37] Polyester v0.7.16
  [ca7ab67e] SimSearchManifoldLearning v0.2.10
⌅ [053f045d] SimilaritySearch v0.11.10
  [82ae8749] StatsAPI v1.7.0
  [37e2e46d] LinearAlgebra v1.11.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_ANI0FC/Manifest.toml`
  [47edcb42] ADTypes v1.14.0
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [ec485272] ArnoldiMethod v0.4.0
  [7d9fca2a] Arpack v0.5.4
  [4fba245c] ArrayInterface v7.18.0
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] CPUSummary v0.2.6
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [861a8166] Combinatorics v1.0.2
  [bbf7d656] CommonSubexpressions v0.3.1
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [187b0558] ConstructionBase v1.5.8
  [adafc99b] CpuId v0.3.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.6.48
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.118
  [ffbed154] DocStringExtensions v0.9.3
  [5789e2e9] FileIO v1.17.0
  [1a297f60] FillArrays v1.13.0
  [6a86dc24] FiniteDiff v2.27.0
  [f6369f11] ForwardDiff v0.10.38
  [86223c79] Graphs v1.12.0
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [34004b35] HypergeometricFunctions v0.3.28
  [615f187c] IfElse v0.1.1
  [d25df0c9] Inflate v0.1.5
  [92d709cd] IrrationalConstants v0.2.4
⌅ [033835bb] JLD2 v0.4.54
  [692b3bcd] JLLWrappers v1.7.0
  [10f19ff3] LayoutPointers v0.1.17
  [2ab3a3ac] LogExpFunctions v0.3.29
  [bdcacae8] LoopVectorization v0.12.171
⌅ [2fda8390] LsqFit v0.12.1
  [1914dd2f] MacroTools v0.5.15
  [06eb3307] ManifoldLearning v0.9.0
  [d125e4d3] ManualMemory v0.1.8
  [e1d29d7a] Missings v1.2.0
⌅ [6f286f6a] MultivariateStats v0.9.0
  [d41bc354] NLSolversBase v7.9.0
  [77ba4419] NaNMath v1.1.2
  [6fe1bfb0] OffsetArrays v1.16.0
  [87e2bd06] OptimBase v2.0.2
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.32
  [d96e819e] Parameters v0.12.3
  [f517fe37] Polyester v0.7.16
  [1d0040c9] PolyesterWeave v0.2.2
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
⌅ [0e966ebe] SearchModels v0.3.3
  [efcf1570] Setfield v1.1.2
  [ca7ab67e] SimSearchManifoldLearning v0.2.10
⌅ [053f045d] SimilaritySearch v0.11.10
  [699a6c99] SimpleTraits v0.9.4
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [aedffcd0] Static v1.2.0
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.3.2
  [7792a7ef] StrideArraysCore v0.5.7
  [8290d209] ThreadingUtilities v0.5.2
  [3bb67fe8] TranscodingStreams v0.11.3
  [3a884ed6] UnPack v1.0.2
  [3d5dd08c] VectorizationBase v0.21.71
⌅ [68821587] Arpack_jll v3.5.1+1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
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  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.2.0+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.8.0+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+1
  [14a3606d] MozillaCACerts_jll v2024.11.26
  [4536629a] OpenBLAS_jll v0.3.28+3
  [05823500] OpenLibm_jll v0.8.1+3
  [bea87d4a] SuiteSparse_jll v7.8.0+1
  [83775a58] Zlib_jll v1.3.1+1
  [8e850b90] libblastrampoline_jll v5.11.2+0
  [8e850ede] nghttp2_jll v1.63.0+1
  [3f19e933] p7zip_jll v17.5.0+1
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in searchbatch(SimilaritySearch.AbstractSearchIndex, SimilaritySearch.AbstractContext, SimilaritySearch.AbstractDatabase, AbstractArray{SimilaritySearch.KnnResult, 1}) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/SimilaritySearch.jl
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in checktask(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/threadtasks.jl
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in (::Polyester.BatchClosure{F, A, S, C})(Ptr{UInt64}) where {F, A, S, C} at /home/pkgeval/.julia/packages/Polyester/eqrC9/src/batch.jl
  1.758045 seconds (702.50 k allocations: 34.082 MiB, 93.90% compilation time)
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in _parallel_append_items_loop!(SimilaritySearch.SearchGraph{DistType, DataType, AdjType, SType} where SType<:SimilaritySearch.LocalSearchAlgorithm where AdjType<:(SimilaritySearch.AdjacencyLists.AbstractAdjacencyList{EndPointType} where EndPointType) where DataType<:SimilaritySearch.AbstractDatabase where DistType<:Distances.SemiMetric, SimilaritySearch.SearchGraphContext, Any, Any) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/searchgraph/insertions.jl
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in connect_reverse_links(SimilaritySearch.AdjacencyLists.AbstractAdjacencyList{EndPointType} where EndPointType, Integer, Integer) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/searchgraph/neighborhood.jl
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in var"#fft#138"(Any, typeof(SimilaritySearch.fft), Distances.SemiMetric, SimilaritySearch.AbstractDatabase, Integer) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/fft.jl
computing farthest point 1, dmax: Inf, imax: 1, n: 4
computing farthest point 2, dmax: 2.7322025, imax: 4, n: 4
computing farthest point 3, dmax: 1.1376781, imax: 2, n: 4
(n, m, k, length(A.centers)) = (14, 4, 3, 3)
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in (::SimilaritySearch.var"#lossfun#create_error_function##2"{index, context, gold, knnlist, queries, ksearch, verbose, R, cov, vacc, vmax, vmin, m})(Any) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/opt.jl
computing farthest point 1, dmax: Inf, imax: 3, n: 5
computing farthest point 2, dmax: 3.7397735, imax: 4, n: 5
computing farthest point 3, dmax: 2.1949635, imax: 1, n: 5
computing farthest point 4, dmax: 1.6658044, imax: 5, n: 5
(n, m, k, length(A.centers)) = (19, 5, 4, 4)
computing farthest point 1, dmax: Inf, imax: 3, n: 4
computing farthest point 2, dmax: 3.3427074, imax: 1, n: 4
computing farthest point 3, dmax: 0.9527576, imax: 4, n: 4
computing farthest point 4, dmax: 0.46275026, imax: 2, n: 4
computing farthest point 5, dmax: 0.0, imax: 1, n: 4
(n, m, k, length(A.centers)) = (29, 6, 5, 5)
computing farthest point 1, dmax: Inf, imax: 6, n: 6
computing farthest point 2, dmax: 3.2447293, imax: 5, n: 6
computing farthest point 3, dmax: 1.9959146, imax: 1, n: 6
computing farthest point 4, dmax: 1.2857213, imax: 3, n: 6
computing farthest point 5, dmax: 1.1996329, imax: 2, n: 6
computing farthest point 6, dmax: 0.6416421, imax: 4, n: 6
(n, m, k, length(A.centers)) = (39, 7, 6, 6)
computing farthest point 1, dmax: Inf, imax: 6, n: 8
computing farthest point 2, dmax: 3.9400313, imax: 7, n: 8
computing farthest point 3, dmax: 2.2752225, imax: 1, n: 8
computing farthest point 4, dmax: 1.954244, imax: 5, n: 8
computing farthest point 5, dmax: 1.2047747, imax: 3, n: 8
computing farthest point 6, dmax: 0.8979418, imax: 4, n: 8
computing farthest point 7, dmax: 0.47500587, imax: 2, n: 8
(n, m, k, length(A.centers)) = (59, 8, 7, 7)
append_items! sp=80, ep=84, n=84, BeamSearch
  bsize: Int32 2
  Δ: Float32 0.878402f0
  maxvisits: Int64 62
, 2025-03-24T21:08:53.822
computing farthest point 1, dmax: Inf, imax: 8, n: 10
computing farthest point 2, dmax: 3.8674023, imax: 10, n: 10
computing farthest point 3, dmax: 1.984486, imax: 4, n: 10
computing farthest point 4, dmax: 1.1728423, imax: 6, n: 10
computing farthest point 5, dmax: 0.9242185, imax: 9, n: 10
computing farthest point 6, dmax: 0.7753321, imax: 5, n: 10
computing farthest point 7, dmax: 0.75115687, imax: 3, n: 10
computing farthest point 8, dmax: 0.7231297, imax: 7, n: 10
computing farthest point 9, dmax: 0.47035822, imax: 2, n: 10
(n, m, k, length(A.centers)) = (89, 10, 9, 9)
append_items! sp=180, ep=184, n=184, BeamSearch
  bsize: Int32 2
  Δ: Float32 0.7232073f0
  maxvisits: Int64 72
, 2025-03-24T21:08:53.844
computing farthest point 1, dmax: Inf, imax: 15, n: 18
computing farthest point 2, dmax: 3.8468542, imax: 16, n: 18
computing farthest point 3, dmax: 2.485919, imax: 9, n: 18
computing farthest point 4, dmax: 1.8135321, imax: 7, n: 18
computing farthest point 5, dmax: 1.4558935, imax: 14, n: 18
computing farthest point 6, dmax: 1.3048956, imax: 17, n: 18
computing farthest point 7, dmax: 1.1127963, imax: 8, n: 18
computing farthest point 8, dmax: 0.8720876, imax: 18, n: 18
computing farthest point 9, dmax: 0.79797006, imax: 12, n: 18
computing farthest point 10, dmax: 0.7122067, imax: 3, n: 18
computing farthest point 11, dmax: 0.6950689, imax: 13, n: 18
computing farthest point 12, dmax: 0.6797431, imax: 1, n: 18
computing farthest point 13, dmax: 0.6109205, imax: 4, n: 18
computing farthest point 14, dmax: 0.5558656, imax: 10, n: 18
computing farthest point 15, dmax: 0.51649076, imax: 11, n: 18
computing farthest point 16, dmax: 0.47659364, imax: 6, n: 18
computing farthest point 17, dmax: 0.3863875, imax: 2, n: 18
(n, m, k, length(A.centers)) = (294, 18, 17, 17)
append_items! sp=350, ep=354, n=354, BeamSearch
  bsize: Int32 2
  Δ: Float32 0.9847897f0
  maxvisits: Int64 96
, 2025-03-24T21:08:53.884
computing farthest point 1, dmax: Inf, imax: 19, n: 21
computing farthest point 2, dmax: 4.0228977, imax: 7, n: 21
computing farthest point 3, dmax: 2.0012739, imax: 5, n: 21
computing farthest point 4, dmax: 1.7783697, imax: 21, n: 21
computing farthest point 5, dmax: 1.5600817, imax: 2, n: 21
computing farthest point 6, dmax: 1.4106646, imax: 10, n: 21
computing farthest point 7, dmax: 1.3006817, imax: 4, n: 21
computing farthest point 8, dmax: 1.2341177, imax: 16, n: 21
computing farthest point 9, dmax: 1.0944515, imax: 12, n: 21
computing farthest point 10, dmax: 0.9735123, imax: 20, n: 21
computing farthest point 11, dmax: 0.9168108, imax: 13, n: 21
computing farthest point 12, dmax: 0.91267455, imax: 14, n: 21
computing farthest point 13, dmax: 0.5457999, imax: 17, n: 21
computing farthest point 14, dmax: 0.542973, imax: 11, n: 21
computing farthest point 15, dmax: 0.5202608, imax: 3, n: 21
computing farthest point 16, dmax: 0.51819366, imax: 8, n: 21
computing farthest point 17, dmax: 0.43755472, imax: 18, n: 21
computing farthest point 18, dmax: 0.41995946, imax: 9, n: 21
computing farthest point 19, dmax: 0.33375838, imax: 1, n: 21
computing farthest point 20, dmax: 0.3018888, imax: 6, n: 21
(n, m, k, length(A.centers)) = (439, 21, 20, 20)
append_items! sp=610, ep=614, n=614, BeamSearch
  bsize: Int32 2
  Δ: Float32 0.68812275f0
  maxvisits: Int64 116
, 2025-03-24T21:08:53.929
computing farthest point 1, dmax: Inf, imax: 19, n: 26
computing farthest point 2, dmax: 4.233359, imax: 13, n: 26
computing farthest point 3, dmax: 2.1333513, imax: 5, n: 26
computing farthest point 4, dmax: 1.7197578, imax: 3, n: 26
computing farthest point 5, dmax: 1.6290538, imax: 16, n: 26
computing farthest point 6, dmax: 1.4337627, imax: 18, n: 26
computing farthest point 7, dmax: 1.3524221, imax: 23, n: 26
computing farthest point 8, dmax: 1.1619762, imax: 7, n: 26
computing farthest point 9, dmax: 1.0067737, imax: 17, n: 26
computing farthest point 10, dmax: 0.96909475, imax: 25, n: 26
computing farthest point 11, dmax: 0.95155513, imax: 1, n: 26
computing farthest point 12, dmax: 0.90554947, imax: 12, n: 26
computing farthest point 13, dmax: 0.86507446, imax: 6, n: 26
computing farthest point 14, dmax: 0.84419924, imax: 22, n: 26
computing farthest point 15, dmax: 0.69268566, imax: 2, n: 26
computing farthest point 16, dmax: 0.59909207, imax: 26, n: 26
computing farthest point 17, dmax: 0.57498676, imax: 14, n: 26
computing farthest point 18, dmax: 0.5599061, imax: 4, n: 26
computing farthest point 19, dmax: 0.48229516, imax: 8, n: 26
computing farthest point 20, dmax: 0.40751687, imax: 10, n: 26
computing farthest point 21, dmax: 0.40206093, imax: 9, n: 26
computing farthest point 22, dmax: 0.34716535, imax: 24, n: 26
computing farthest point 23, dmax: 0.33544573, imax: 15, n: 26
computing farthest point 24, dmax: 0.28831398, imax: 11, n: 26
computing farthest point 25, dmax: 0.2551573, imax: 21, n: 26
(n, m, k, length(A.centers)) = (659, 26, 25, 25)
append_items! sp=960, ep=964, n=964, BeamSearch
  bsize: Int32 46
  Δ: Float32 0.6f0
  maxvisits: Int64 158
, 2025-03-24T21:08:53.992
computing farthest point 1, dmax: Inf, imax: 2, n: 32
computing farthest point 2, dmax: 2.31267, imax: 13, n: 32
computing farthest point 3, dmax: 2.1710665, imax: 23, n: 32
computing farthest point 4, dmax: 1.9014039, imax: 3, n: 32
computing farthest point 5, dmax: 1.8294151, imax: 12, n: 32
computing farthest point 6, dmax: 1.5118973, imax: 25, n: 32
computing farthest point 7, dmax: 1.4142872, imax: 30, n: 32
computing farthest point 8, dmax: 1.316256, imax: 28, n: 32
computing farthest point 9, dmax: 1.2124922, imax: 20, n: 32
computing farthest point 10, dmax: 1.0789493, imax: 22, n: 32
computing farthest point 11, dmax: 1.0626308, imax: 21, n: 32
computing farthest point 12, dmax: 0.7828199, imax: 29, n: 32
computing farthest point 13, dmax: 0.7728998, imax: 32, n: 32
computing farthest point 14, dmax: 0.7699877, imax: 7, n: 32
computing farthest point 15, dmax: 0.7663088, imax: 24, n: 32
computing farthest point 16, dmax: 0.7467337, imax: 4, n: 32
computing farthest point 17, dmax: 0.74315, imax: 19, n: 32
computing farthest point 18, dmax: 0.7146881, imax: 8, n: 32
computing farthest point 19, dmax: 0.7083269, imax: 6, n: 32
computing farthest point 20, dmax: 0.6624943, imax: 11, n: 32
computing farthest point 21, dmax: 0.64307576, imax: 1, n: 32
computing farthest point 22, dmax: 0.47061807, imax: 26, n: 32
computing farthest point 23, dmax: 0.4466652, imax: 15, n: 32
computing farthest point 24, dmax: 0.3249392, imax: 18, n: 32
computing farthest point 25, dmax: 0.27630627, imax: 14, n: 32
computing farthest point 26, dmax: 0.22311476, imax: 5, n: 32
computing farthest point 27, dmax: 0.20162979, imax: 31, n: 32
computing farthest point 28, dmax: 0.18852204, imax: 27, n: 32
computing farthest point 29, dmax: 0.18418401, imax: 9, n: 32
computing farthest point 30, dmax: 0.15972702, imax: 17, n: 32
computing farthest point 31, dmax: 0.14447339, imax: 10, n: 32
(n, m, k, length(A.centers)) = (989, 32, 31, 31)
  0.405853 seconds (266.27 k allocations: 12.770 MiB, 97.09% compilation time)
  0.679589 seconds (354.07 k allocations: 17.154 MiB, 2.29% gc time, 95.02% compilation time)
computing farthest point 1, dmax: Inf, imax: 4, n: 4
computing farthest point 2, dmax: 3.9667647, imax: 1, n: 4
computing farthest point 3, dmax: 0.9249176, imax: 3, n: 4
(n, m, k, length(A.centers)) = (14, 4, 3, 3)
computing farthest point 1, dmax: Inf, imax: 5, n: 5
computing farthest point 2, dmax: 1.8144499, imax: 2, n: 5
computing farthest point 3, dmax: 1.1641659, imax: 4, n: 5
computing farthest point 4, dmax: 0.90776116, imax: 3, n: 5
(n, m, k, length(A.centers)) = (19, 5, 4, 4)
computing farthest point 1, dmax: Inf, imax: 5, n: 5
computing farthest point 2, dmax: 2.9705193, imax: 4, n: 5
computing farthest point 3, dmax: 1.8645462, imax: 1, n: 5
computing farthest point 4, dmax: 1.0182859, imax: 2, n: 5
computing farthest point 5, dmax: 0.69969976, imax: 3, n: 5
(n, m, k, length(A.centers)) = (29, 6, 5, 5)
computing farthest point 1, dmax: Inf, imax: 7, n: 7
computing farthest point 2, dmax: 1.8203747, imax: 5, n: 7
computing farthest point 3, dmax: 1.4739792, imax: 2, n: 7
computing farthest point 4, dmax: 1.1332698, imax: 6, n: 7
computing farthest point 5, dmax: 0.64626974, imax: 4, n: 7
computing farthest point 6, dmax: 0.50055003, imax: 1, n: 7
(n, m, k, length(A.centers)) = (39, 7, 6, 6)
computing farthest point 1, dmax: Inf, imax: 4, n: 8
computing farthest point 2, dmax: 3.3968337, imax: 2, n: 8
computing farthest point 3, dmax: 1.4048613, imax: 5, n: 8
computing farthest point 4, dmax: 1.112098, imax: 1, n: 8
computing farthest point 5, dmax: 1.105393, imax: 6, n: 8
computing farthest point 6, dmax: 0.75044453, imax: 7, n: 8
computing farthest point 7, dmax: 0.3452822, imax: 8, n: 8
(n, m, k, length(A.centers)) = (59, 8, 7, 7)
computing farthest point 1, dmax: Inf, imax: 4, n: 10
computing farthest point 2, dmax: 3.3728695, imax: 6, n: 10
computing farthest point 3, dmax: 1.6251873, imax: 3, n: 10
computing farthest point 4, dmax: 1.5020202, imax: 5, n: 10
computing farthest point 5, dmax: 1.2266495, imax: 2, n: 10
computing farthest point 6, dmax: 1.0054325, imax: 8, n: 10
computing farthest point 7, dmax: 0.55537105, imax: 9, n: 10
computing farthest point 8, dmax: 0.54445684, imax: 7, n: 10
computing farthest point 9, dmax: 0.40715677, imax: 1, n: 10
(n, m, k, length(A.centers)) = (89, 10, 9, 9)
append_items! sp=285, ep=289, n=289, BeamSearch
  bsize: Int32 2
  Δ: Float32 0.82989585f0
  maxvisits: Int64 86
, 2025-03-24T21:09:08.165
computing farthest point 1, dmax: Inf, imax: 7, n: 18
computing farthest point 2, dmax: 2.2167826, imax: 1, n: 18
computing farthest point 3, dmax: 1.8033136, imax: 4, n: 18
computing farthest point 4, dmax: 1.6170621, imax: 5, n: 18
computing farthest point 5, dmax: 1.2932997, imax: 3, n: 18
computing farthest point 6, dmax: 1.1316861, imax: 6, n: 18
computing farthest point 7, dmax: 1.1043848, imax: 15, n: 18
computing farthest point 8, dmax: 0.96414435, imax: 12, n: 18
computing farthest point 9, dmax: 0.8751531, imax: 11, n: 18
computing farthest point 10, dmax: 0.7676673, imax: 9, n: 18
computing farthest point 11, dmax: 0.6787587, imax: 18, n: 18
computing farthest point 12, dmax: 0.66832834, imax: 8, n: 18
computing farthest point 13, dmax: 0.5357785, imax: 17, n: 18
computing farthest point 14, dmax: 0.5260514, imax: 14, n: 18
computing farthest point 15, dmax: 0.46797684, imax: 16, n: 18
computing farthest point 16, dmax: 0.4074525, imax: 13, n: 18
computing farthest point 17, dmax: 0.29404837, imax: 2, n: 18
(n, m, k, length(A.centers)) = (294, 18, 17, 17)
computing farthest point 1, dmax: Inf, imax: 20, n: 21
computing farthest point 2, dmax: 2.0295672, imax: 16, n: 21
computing farthest point 3, dmax: 1.9749138, imax: 6, n: 21
computing farthest point 4, dmax: 1.5961814, imax: 7, n: 21
computing farthest point 5, dmax: 1.4731257, imax: 8, n: 21
computing farthest point 6, dmax: 1.4176372, imax: 18, n: 21
computing farthest point 7, dmax: 1.2865295, imax: 2, n: 21
computing farthest point 8, dmax: 1.0095052, imax: 12, n: 21
computing farthest point 9, dmax: 0.96828836, imax: 10, n: 21
computing farthest point 10, dmax: 0.85753626, imax: 13, n: 21
computing farthest point 11, dmax: 0.84264636, imax: 11, n: 21
computing farthest point 12, dmax: 0.74772906, imax: 9, n: 21
computing farthest point 13, dmax: 0.52704895, imax: 5, n: 21
computing farthest point 14, dmax: 0.5113102, imax: 4, n: 21
computing farthest point 15, dmax: 0.49590832, imax: 21, n: 21
computing farthest point 16, dmax: 0.31671387, imax: 14, n: 21
computing farthest point 17, dmax: 0.20413908, imax: 3, n: 21
computing farthest point 18, dmax: 0.196676, imax: 15, n: 21
computing farthest point 19, dmax: 0.13107264, imax: 19, n: 21
computing farthest point 20, dmax: 0.07603082, imax: 17, n: 21
(n, m, k, length(A.centers)) = (439, 21, 20, 20)
append_items! sp=455, ep=459, n=459, BeamSearch
  bsize: Int32 2
  Δ: Float32 0.84486824f0
  maxvisits: Int64 142
, 2025-03-24T21:09:08.231
computing farthest point 1, dmax: Inf, imax: 20, n: 26
computing farthest point 2, dmax: 3.4880273, imax: 1, n: 26
computing farthest point 3, dmax: 1.7654027, imax: 12, n: 26
computing farthest point 4, dmax: 1.526065, imax: 25, n: 26
computing farthest point 5, dmax: 1.5086412, imax: 7, n: 26
computing farthest point 6, dmax: 1.2743415, imax: 19, n: 26
computing farthest point 7, dmax: 1.2054543, imax: 6, n: 26
computing farthest point 8, dmax: 1.0456597, imax: 11, n: 26
computing farthest point 9, dmax: 0.8978753, imax: 17, n: 26
computing farthest point 10, dmax: 0.88378865, imax: 26, n: 26
computing farthest point 11, dmax: 0.7280354, imax: 2, n: 26
computing farthest point 12, dmax: 0.7056611, imax: 22, n: 26
computing farthest point 13, dmax: 0.6489576, imax: 14, n: 26
computing farthest point 14, dmax: 0.5810103, imax: 10, n: 26
computing farthest point 15, dmax: 0.5561446, imax: 24, n: 26
computing farthest point 16, dmax: 0.52759176, imax: 3, n: 26
computing farthest point 17, dmax: 0.5214223, imax: 15, n: 26
computing farthest point 18, dmax: 0.51928484, imax: 8, n: 26
computing farthest point 19, dmax: 0.49995556, imax: 9, n: 26
computing farthest point 20, dmax: 0.49061817, imax: 5, n: 26
computing farthest point 21, dmax: 0.4748233, imax: 13, n: 26
computing farthest point 22, dmax: 0.46148217, imax: 21, n: 26
computing farthest point 23, dmax: 0.39330247, imax: 23, n: 26
computing farthest point 24, dmax: 0.2970022, imax: 4, n: 26
computing farthest point 25, dmax: 0.26661173, imax: 16, n: 26
(n, m, k, length(A.centers)) = (659, 26, 25, 25)
append_items! sp=775, ep=779, n=779, BeamSearch
  bsize: Int32 2
  Δ: Float32 0.96300006f0
  maxvisits: Int64 130
, 2025-03-24T21:09:08.272
computing farthest point 1, dmax: Inf, imax: 28, n: 32
computing farthest point 2, dmax: 3.5156026, imax: 23, n: 32
computing farthest point 3, dmax: 1.9453061, imax: 3, n: 32
computing farthest point 4, dmax: 1.8539728, imax: 21, n: 32
computing farthest point 5, dmax: 1.7314264, imax: 24, n: 32
computing farthest point 6, dmax: 1.5370352, imax: 10, n: 32
computing farthest point 7, dmax: 1.3507774, imax: 8, n: 32
computing farthest point 8, dmax: 1.1281074, imax: 22, n: 32
computing farthest point 9, dmax: 1.1039525, imax: 26, n: 32
computing farthest point 10, dmax: 1.0286276, imax: 13, n: 32
computing farthest point 11, dmax: 1.0217779, imax: 20, n: 32
computing farthest point 12, dmax: 0.9059837, imax: 5, n: 32
computing farthest point 13, dmax: 0.82193977, imax: 12, n: 32
computing farthest point 14, dmax: 0.7864537, imax: 32, n: 32
computing farthest point 15, dmax: 0.6750699, imax: 27, n: 32
computing farthest point 16, dmax: 0.6375323, imax: 7, n: 32
computing farthest point 17, dmax: 0.63741106, imax: 9, n: 32
computing farthest point 18, dmax: 0.5848874, imax: 16, n: 32
computing farthest point 19, dmax: 0.51665974, imax: 4, n: 32
computing farthest point 20, dmax: 0.49663964, imax: 19, n: 32
computing farthest point 21, dmax: 0.48466173, imax: 15, n: 32
computing farthest point 22, dmax: 0.34678158, imax: 1, n: 32
computing farthest point 23, dmax: 0.31380925, imax: 11, n: 32
computing farthest point 24, dmax: 0.3059444, imax: 6, n: 32
computing farthest point 25, dmax: 0.294167, imax: 30, n: 32
computing farthest point 26, dmax: 0.28833517, imax: 29, n: 32
computing farthest point 27, dmax: 0.28602493, imax: 2, n: 32
computing farthest point 28, dmax: 0.18423809, imax: 31, n: 32
computing farthest point 29, dmax: 0.16037688, imax: 18, n: 32
computing farthest point 30, dmax: 0.14039801, imax: 14, n: 32
computing farthest point 31, dmax: 0.12403944, imax: 25, n: 32
(n, m, k, length(A.centers)) = (989, 32, 31, 31)
  0.355149 seconds (266.25 k allocations: 12.764 MiB, 97.67% compilation time)
Test Summary:                             | Pass  Total     Time
SimilaritySearch for ManifoldLearning api |    4      4  1m09.4s
Test Summary: | Pass  Total  Time
utils tests   |    3      3  4.8s
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in var"#optimize_embedding#3"(Real, Float32, Any, typeof(SimSearchManifoldLearning.optimize_embedding), Any, AbstractArray{T, 2} where T, AbstractArray{T, 2} where T, Int64, Float32, Float32, Int64, Float32, Float32) at /home/pkgeval/.julia/packages/SimSearchManifoldLearning/PdXsX/src/embeddings.jl
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in var"#compute_membership_strengths#15"(Any, typeof(SimSearchManifoldLearning.compute_membership_strengths), AbstractArray{T, 2} where T, AbstractArray{T, 2} where T, Integer, Bool) at /home/pkgeval/.julia/packages/SimSearchManifoldLearning/PdXsX/src/umap_.jl
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in allknn(SimilaritySearch.AbstractSearchIndex, SimilaritySearch.AbstractContext, AbstractArray{Int32, 2}, AbstractArray{Float32, 2}) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/allknn.jl
  1.529067 seconds (394.35 k allocations: 19.119 MiB, 11.49% gc time, 100.00% compilation time)
  0.000013 seconds (6 allocations: 208 bytes)
  0.001474 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding RandomLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.862097175
- embedding init: 4.1e-6
- embedding opt: 0.072034956

  1.170437 seconds (351.36 k allocations: 17.106 MiB, 99.88% compilation time)
*** computing graph
*** layout embedding RandomLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000897291
- embedding init: 3.71e-6
- embedding opt: 0.071954117

  0.001526 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding RandomLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000873311
- embedding init: 3.49e-6
- embedding opt: 0.071793548

  0.001544 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding SpectralLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000869032
- embedding init: 5.286085127
- embedding opt: 0.073396062

  0.001815 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding PrecomputedLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.001334177
- embedding init: 5.5e-7
- embedding opt: 0.074019077

  0.001701 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding KnnGraphLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000811442
- embedding init: 3.745e-5
- embedding opt: 0.069193614

  0.001431 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding RandomLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000900501
- embedding init: 2.49e-6
- embedding opt: 0.065002506

  0.001409 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding RandomLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000913921
- embedding init: 3.3e-6
- embedding opt: 0.069071725

  0.001419 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding RandomLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000828142
- embedding init: 5.079e-6
- embedding opt: 0.075808639

  0.001421 seconds (8 allocations: 11.969 KiB)
*** computing graph
*** layout embedding RandomLayout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000829522
- embedding init: 3.15e-6
- embedding opt: 0.07060448

(rhos, sigmas) = (Float32[1.0, 2.0, 3.0], Float32[1.9829102, 2.5358887, 2.6249695])
┌ Info: [2.321931655873457, 2.321930914055594, 2.3219283113392373]
│   diffs =
│    3-element Vector{Float64}:
│     3.560986094885976e-6
│     2.819168231749103e-6
└     2.164518750902289e-7
(:last => rhos, sigmas) = (:last => Float32[0.0, 1.0, 2.0], Float32[5.421011f-20, 5.421011f-20, 5.421011f-20])
(rows, cols, vals) = (Int32[1, 2, 2, 1, 3, 2], Int32[1, 1, 2, 2, 3, 3], Float32[0.0, 1.0, 0.0, 1.0, 0.0, 1.0])
[ Info: spectral_layout!
[ Info: initialize_embedding
[ Info: Matrix{Float32} => Matrix{Float32}
[ Info: ===== umap predict =====
  0.000144 seconds (6 allocations: 944 bytes)
*** computing graph
*** layout embedding SpectralLayout
┌ Info: Arpack.XYAUPD_Exception(1)
└ Error encountered in spectral_layout; defaulting to random layout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 0.000120709
- embedding init: 0.077091076
- embedding opt: 8.6479e-5

WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in searchbatch(SimilaritySearch.AbstractSearchIndex, SimilaritySearch.AbstractContext, SimilaritySearch.AbstractDatabase, AbstractArray{Int32, 2}, AbstractArray{Float32, 2}) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/SimilaritySearch.jl
  0.000135 seconds (6 allocations: 944 bytes)
*** computing graph
*** layout embedding SpectralLayout
┌ Info: Arpack.XYAUPD_Exception(1)
└ Error encountered in spectral_layout; defaulting to random layout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 6.4079e-5
- embedding init: 0.003500485
- embedding opt: 7.9369e-5

  0.000127 seconds (6 allocations: 944 bytes)
*** computing graph
*** layout embedding SpectralLayout
┌ Info: Arpack.XYAUPD_Exception(1)
└ Error encountered in spectral_layout; defaulting to random layout
*** fit ab / embedding
*** opt embedding
UMAP construction time cost report:
- fuzzy graph: 6.592e-5
- embedding init: 0.003539554
- embedding opt: 7.639e-5

Test Summary: | Pass  Total     Time
umap tests    |   44     44  1m30.4s
     Testing SimSearchManifoldLearning tests passed 

Testing completed after 227.22s

PkgEval succeeded after 745.51s