Package evaluation of RCall on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T18:41:39.436 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.06s ################################################################################ # Installation # Installing RCall... Resolving package versions... Installed Conda ─ v1.10.2 Installed RCall ─ v0.14.6 Updating `~/.julia/environments/v1.12/Project.toml` [6f49c342] + RCall v0.14.6 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [324d7699] + CategoricalArrays v0.10.8 [34da2185] + Compat v4.16.0 [8f4d0f93] + Conda v1.10.2 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.3 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [6f49c342] + RCall v0.14.6 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [81def892] + VersionParsing v1.3.0 [1b915085] + WinReg v1.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/db17ec90d9f904b79e7877a764fdf95ff5c5f315/build.log` Installation completed after 104.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: IJulia Failed to precompile IJulia [7073ff75-c697-5162-941a-fcdaad2a7d2a] to "/home/pkgeval/.julia/compiled/v1.12/IJulia/jl_MModzT". ERROR: LoadError: ZMQ.StateError("Cannot assign requested address") Stacktrace: [1] bind(socket::ZMQ.Socket, endpoint::String) @ ZMQ ~/.julia/packages/ZMQ/Lz9O7/src/socket.jl:91 [2] macro expansion @ ~/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:73 [inlined] [3] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [4] top-level scope @ ~/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:57 [5] include(mod::Module, _path::String) @ Base ./Base.jl:300 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [7] top-level scope @ stdin:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:485 [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [10] include_string @ ./loading.jl:2856 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [12] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:3 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile ZMQ [c2297ded-f4af-51ae-bb23-16f91089e4e1] to "/home/pkgeval/.julia/compiled/v1.12/ZMQ/jl_A5AHBp". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/IJulia/dR0lE/src/IJulia.jl:36 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/IJulia/dR0lE/src/IJulia.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 43.42s ################################################################################ # Testing # Testing RCall Status `/tmp/jl_Ct9TLd/Project.toml` [39de3d68] AxisArrays v0.4.7 [324d7699] CategoricalArrays v0.10.8 [8f4d0f93] Conda v1.10.2 [992eb4ea] CondaPkg v0.2.26 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [7073ff75] IJulia v1.26.0 [21216c6a] Preferences v1.4.3 [6f49c342] RCall v0.14.6 [ae029012] Requires v1.3.1 [3eaba693] StatsModels v0.7.4 [44d3d7a6] Weave v0.10.12 [1b915085] WinReg v1.0.0 [ade2ca70] Dates v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.12.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Ct9TLd/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [39de3d68] AxisArrays v0.4.7 [324d7699] CategoricalArrays v0.10.8 [34da2185] Compat v4.16.0 [8f4d0f93] Conda v1.10.2 [992eb4ea] CondaPkg v0.2.26 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.3 [eafb193a] Highlights v0.5.3 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.26.0 [842dd82b] InlineStrings v1.4.3 [8197267c] IntervalSets v0.7.10 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [739be429] MbedTLS v1.1.9 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.20 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [6f49c342] RCall v0.14.6 [b3c3ace0] RangeArrays v0.3.2 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [b85f4697] SoftGlobalScope v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [3eaba693] StatsModels v0.7.4 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [81def892] VersionParsing v1.3.0 [44d3d7a6] Weave v0.10.12 [1b915085] WinReg v1.0.0 [ddb6d928] YAML v0.4.13 [c2297ded] ZMQ v1.4.0 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [8f1865be] ZeroMQ_jll v4.3.6+0 [a9144af2] libsodium_jll v1.0.21+0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Testing Running tests... Test Summary: | Pass Total Time installation | 5 5 10.0s ┌ Info: └ R_PPSTACKTOP_INITIAL = 8589934592 RObject{VecSxp} R version 4.3.1 (2023-06-16) Platform: x86_64-conda-linux-gnu (64-bit) Running under: Debian GNU/Linux 12 (bookworm) Matrix products: default BLAS/LAPACK: /home/pkgeval/.julia/conda/3/x86_64/lib/libopenblasp-r0.3.21.so; LAPACK version 3.9.0 locale: [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C [3] LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8 [5] LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 [7] LC_PAPER=C.UTF-8 LC_NAME=C.UTF-8 [9] LC_ADDRESS=C.UTF-8 LC_TELEPHONE=C.UTF-8 [11] LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C.UTF-8 time zone: NA tzcode source: system (glibc) attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_4.3.1 RObject{VecSxp} $MBCS [1] TRUE $`UTF-8` [1] TRUE $`Latin-1` [1] FALSE $codeset [1] "UTF-8" ┌ Warning: RCall.jl: Warning in grSoftVersion() : │ unable to load shared object '/home/pkgeval/.julia/conda/3/x86_64/lib/R/modules//R_X11.so': │ libX11.so.6: cannot open shared object file: No such file or directory │ Warning in cairoVersion() : │ unable to load shared object '/home/pkgeval/.julia/conda/3/x86_64/lib/R/library/grDevices/libs//cairo.so': │ libXrender.so.1: cannot open shared object file: No such file or directory │ Warning in png("/tmp/jl_v2h2zq7uVc") : failed to load cairo DLL └ @ RCall ~/.julia/packages/RCall/0ggIQ/src/io.jl:172 basic: Test Failed at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/basic.jl:104 Expression: isfile(f) Stacktrace: [1] top-level scope @ ~/.julia/packages/RCall/0ggIQ/test/basic.jl:104 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [4] top-level scope @ ~/.julia/packages/RCall/0ggIQ/test/runtests.jl:71 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [6] macro expansion @ ~/.julia/packages/RCall/0ggIQ/test/runtests.jl:71 [inlined] basic: Error During Test at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/runtests.jl:70 Got exception outside of a @test LoadError: IOError: unlink("/tmp/jl_v2h2zq7uVc"): no such file or directory (ENOENT) Stacktrace: [1] uv_error @ ./libuv.jl:106 [inlined] [2] unlink(p::String) @ Base.Filesystem ./file.jl:1194 [3] rm(path::String; force::Bool, recursive::Bool, allow_delayed_delete::Bool) @ Base.Filesystem ./file.jl:285 [4] rm(path::String) @ Base.Filesystem ./file.jl:281 [5] top-level scope @ ~/.julia/packages/RCall/0ggIQ/test/basic.jl:105 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [7] top-level scope @ ~/.julia/packages/RCall/0ggIQ/test/runtests.jl:71 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [9] macro expansion @ ~/.julia/packages/RCall/0ggIQ/test/runtests.jl:71 [inlined] [10] eval(m::Module, e::Any) @ Core ./boot.jl:485 [11] macro expansion @ ~/.julia/packages/RCall/0ggIQ/test/runtests.jl:70 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [13] top-level scope @ ~/.julia/packages/RCall/0ggIQ/test/runtests.jl:47 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core ./boot.jl:485 [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [18] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/basic.jl:100 ┌ Warning: RCall.jl: Loading required package: MASS │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘MASS’ └ @ RCall ~/.julia/packages/RCall/0ggIQ/src/io.jl:172 ┌ Info: └ has_mass_package = false ┌ Warning: RCall.jl: Loading required package: ape │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘ape’ └ @ RCall ~/.julia/packages/RCall/0ggIQ/src/io.jl:172 [ Info: installing ape to temporary lib sh: 1: wget: not found sh: 1: wget: not found sh: 1: wget: not found ┌ Warning: RCall.jl: Warning: unable to access index for repository https://cloud.r-project.org/src/contrib: │ 'wget' call had nonzero exit status │ Warning: package ‘ape’ is not available for this version of R │ │ A version of this package for your version of R might be available elsewhere, │ see the ideas at │ https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages └ @ RCall ~/.julia/packages/RCall/0ggIQ/src/io.jl:172 namespaces: Error During Test at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/runtests.jl:70 Got exception outside of a @test LoadError: REvalError: Error in library("ape") : there is no package called ‘ape’ in expression starting at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/namespaces.jl:5 Error in Timer: attempt to switch to exited task Stacktrace: [1] try_yieldto(undo::typeof(identity)) @ Base ./task.jl:1114 [2] throwto(t::Task, exc::Any) @ Base ./task.jl:1145 [3] #read_repl##2 @ ~/.julia/packages/RCall/0ggIQ/test/repl.jl:39 [inlined] [4] (::Base.var"#626#627"{var"#read_repl##2#read_repl##3"{String, Task}, Timer})() @ Base ./asyncevent.jl:313┌ Error: Error in the keymap │ exception = │ MethodError: no method matching _completion_text(::REPL.REPLCompletions.BslashCompletion) │ The function `_completion_text` exists, but no method is defined for this combination of argument types. │ │ Closest candidates are: │ _completion_text(!Matched::REPL.REPLCompletions.DictCompletion) │ @ REPL /opt/julia/share/julia/stdlib/v1.12/REPL/src/REPLCompletions.jl:122 │ _completion_text(!Matched::REPL.REPLCompletions.KeywordArgumentCompletion) │ @ REPL /opt/julia/share/julia/stdlib/v1.12/REPL/src/REPLCompletions.jl:123 │ _completion_text(!Matched::REPL.REPLCompletions.KeyvalCompletion) │ @ REPL /opt/julia/share/julia/stdlib/v1.12/REPL/src/REPLCompletions.jl:114 │ ... │ │ Stacktrace: │ [1] completion_text(c::REPL.REPLCompletions.BslashCompletion) │ @ REPL.REPLCompletions /opt/julia/share/julia/stdlib/v1.12/REPL/src/REPLCompletions.jl:125 │ [2] iterate │ @ ./generator.jl:48 [inlined] │ [3] _collect(c::Vector{REPL.REPLCompletions.Completion}, itr::Base.Generator{Vector{REPL.REPLCompletions.Completion}, typeof(REPL.REPLCompletions.completion_text)}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) │ @ Base ./array.jl:810 │ [4] collect_similar │ @ ./array.jl:732 [inlined] │ [5] map │ @ ./abstractarray.jl:3410 [inlined] │ [6] complete_line(c::RCall.RPrompt.RCompletionProvider, s::REPL.LineEdit.PromptState; hint::Bool) │ @ RCall.RPrompt ~/.julia/packages/RCall/0ggIQ/src/RPrompt.jl:155 │ [7] complete_line(c::REPL.LineEdit.CompletionProvider, s::Any, ::Module; hint::Bool) │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:199 │ [8] complete_line_named(::Any, ::Vararg{Any}; kwargs...) │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:394 │ [9] complete_line_named │ @ /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:393 [inlined] │ [10] complete_line(s::REPL.LineEdit.PromptState, repeats::Int64, mod::Module; hint::Bool) │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:456 │ [11] complete_line(s::REPL.LineEdit.PromptState, repeats::Int64, mod::Module) │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:455 │ [12] complete_line(s::REPL.LineEdit.MIState) │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:383 │ [13] edit_tab(s::REPL.LineEdit.MIState, jump_spaces::Bool, delete_trailing::Bool) │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:2464 │ [14] edit_tab │ @ /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:2464 [inlined] │ [15] (::REPL.LineEdit.var"#140#141")(::REPL.LineEdit.MIState, ::Any, ::Vararg{Any}) │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:2510 │ [16] #invokelatest#1 │ @ ./essentials.jl:1056 [inlined] │ [17] invokelatest │ @ ./essentials.jl:1052 [inlined] │ [18] (::REPL.LineEdit.var"#match_input##0#match_input##1"{REPL.LineEdit.var"#140#141", String})(s::Any, p::Any) │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:1756 │ [19] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:2906 [inlined] │ [20] macro expansion │ @ ./lock.jl:294 [inlined] │ [21] (::REPL.LineEdit.var"#prompt!##2#prompt!##3"{FakeTerminal, REPL.LineEdit.ModalInterface, REPL.LineEdit.MIState, ReentrantLock, REPL.LineEdit.Prompt})() │ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:2896 └ @ REPL.LineEdit /opt/julia/share/julia/stdlib/v1.12/REPL/src/LineEdit.jl:2908 repl: Error During Test at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/repl.jl:71 Test threw exception Expression: check_repl_stdout("\\alpha") TaskFailedException Stacktrace: [1] #wait#576 @ ./task.jl:363 [inlined] [2] wait @ ./task.jl:360 [inlined] [3] fetch @ ./task.jl:525 [inlined] [4] read_repl(io::Pipe, x::String) @ Main ~/.julia/packages/RCall/0ggIQ/test/repl.jl:42 [5] check_repl_stdout(x::String) @ Main ~/.julia/packages/RCall/0ggIQ/test/repl.jl:47 [6] top-level scope @ ~/.julia/packages/RCall/0ggIQ/test/repl.jl:515 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] [8] macro expansion @ ~/.julia/packages/RCall/0ggIQ/test/repl.jl:71 [inlined] nested task error: Expect "\alpha", but wait too long. Stacktrace: [1] try_yieldto(undo::typeof(Base.ensure_rescheduled)) @ Base ./task.jl:1128 [2] wait() @ Base ./task.jl:1200 [3] wait(c::Base.GenericCondition{Base.Threads.SpinLock}; first::Bool) @ Base ./condition.jl:141 [4] wait @ ./condition.jl:136 [inlined] [5] wait_readnb(x::Base.PipeEndpoint, nb::Int64) @ Base ./stream.jl:416 [6] eof @ ./stream.jl:106 [inlined] [7] iterate @ ./io.jl:1382 [inlined] [8] readuntil_vector!(io::Base.PipeEndpoint, target::Base.CodeUnits{UInt8, String}, keep::Bool, out::IOBuffer) @ Base ./io.jl:1085 [9] copyuntil @ ./io.jl:1118 [inlined] [10] copyuntil(out::IOBuffer, io::Base.PipeEndpoint, target::String; keep::Bool) @ Base ./io.jl:1110 [11] copyuntil @ ./io.jl:1097 [inlined] [12] copyuntil @ ./io.jl:466 [inlined] [13] readuntil(stream::Pipe, delim::String; kw::@Kwargs{}) @ Base ./io.jl:547 [14] readuntil @ ./io.jl:547 [inlined] [15] (::var"#read_repl##0#read_repl##1"{Pipe, String, Base.RefValue{Any}})() @ Main ~/.julia/packages/RCall/0ggIQ/test/repl.jl:38 repl: Error During Test at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/repl.jl:74 Test threw exception Expression: check_repl_stdout("α") TaskFailedException Stacktrace: [1] #wait#576 @ ./task.jl:363 [inlined] [2] wait @ ./task.jl:360 [inlined] [3] fetch @ ./task.jl:525 [inlined] [4] read_repl(io::Pipe, x::String) @ Main ~/.julia/packages/RCall/0ggIQ/test/repl.jl:42 [5] check_repl_stdout(x::String) @ Main ~/.julia/packages/RCall/0ggIQ/test/repl.jl:47 [6] top-level scope @ ~/.julia/packages/RCall/0ggIQ/test/repl.jl:515 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] [8] macro expansion @ ~/.julia/packages/RCall/0ggIQ/test/repl.jl:74 [inlined] nested task error: Expect "α", but wait too long. Stacktrace: [1] try_yieldto(undo::typeof(Base.ensure_rescheduled)) @ Base ./task.jl:1128 [2] wait() @ Base ./task.jl:1200 [3] wait(c::Base.GenericCondition{Base.Threads.SpinLock}; first::Bool) @ Base ./condition.jl:141 [4] wait @ ./condition.jl:136 [inlined] [5] wait_readnb(x::Base.PipeEndpoint, nb::Int64) @ Base ./stream.jl:416 [6] eof @ ./stream.jl:106 [inlined] [7] iterate (repeats 2 times) @ ./io.jl:1382 [inlined] [8] readuntil_vector!(io::Base.PipeEndpoint, target::Base.CodeUnits{UInt8, String}, keep::Bool, out::IOBuffer) @ Base ./io.jl:1037 [9] copyuntil @ ./io.jl:1118 [inlined] [10] copyuntil(out::IOBuffer, io::Base.PipeEndpoint, target::String; keep::Bool) @ Base ./io.jl:1110 [11] copyuntil @ ./io.jl:1097 [inlined] [12] copyuntil @ ./io.jl:466 [inlined] [13] readuntil(stream::Pipe, delim::String; kw::@Kwargs{}) @ Base ./io.jl:547 [14] readuntil @ ./io.jl:547 [inlined] [15] (::var"#read_repl##0#read_repl##1"{Pipe, String, Base.RefValue{Any}})() @ Main ~/.julia/packages/RCall/0ggIQ/test/repl.jl:38 Precompiling packages... ✗ ZMQ Info Given IJulia was explicitly requested, output will be shown live  ERROR: LoadError: ZMQ.StateError("Cannot assign requested address") Stacktrace:  [1] bind(socket::ZMQ.Socket, endpoint::String)  @ ZMQ ~/.julia/packages/ZMQ/Lz9O7/src/socket.jl:91  [2] macro expansion  @ ~/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:73 [inlined]  [3] macro expansion  @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined]  [4] top-level scope  @ ~/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:57  [5] include(mod::Module, _path::String)  @ Base ./Base.jl:300  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2995  [7] top-level scope  @ stdin:6  [8] eval(m::Module, e::Any)  @ Core ./boot.jl:485  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [10] include_string  @ ./loading.jl:2856 [inlined]  [11] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:327  [12] _start()  @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:3 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile ZMQ [c2297ded-f4af-51ae-bb23-16f91089e4e1] to "/home/pkgeval/.julia/compiled/v1.12/ZMQ/jl_yxDcj5". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3279  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2673  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114  [7] #invokelatest#1  @ ./essentials.jl:1058 [inlined]  [8] invokelatest  @ ./essentials.jl:1052 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3850  [10] maybe_cachefile_lock  @ ./loading.jl:3847 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2659  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2484  [13] macro expansion  @ ./loading.jl:2412 [inlined]  [14] macro expansion  @ ./lock.jl:294 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2369  [16] #invoke_in_world#2  @ ./essentials.jl:1091 [inlined]  [17] invoke_in_world  @ ./essentials.jl:1087 [inlined]  [18] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2361  [19] top-level scope  @ ~/.julia/packages/IJulia/dR0lE/src/IJulia.jl:36  [20] include(mod::Module, _path::String)  @ Base ./Base.jl:300  [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2995  [22] top-level scope  @ stdin:6  [23] eval(m::Module, e::Any)  @ Core ./boot.jl:485  [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [25] include_string  @ ./loading.jl:2856 [inlined]  [26] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:327  [27] _start()  @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/IJulia/dR0lE/src/IJulia.jl:1 in expression starting at stdin:6 ✗ IJulia 0 dependencies successfully precompiled in 21 seconds. 42 already precompiled. IJulia: Error During Test at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/runtests.jl:79 Got exception outside of a @test LoadError: The following 1 direct dependency failed to precompile: IJulia Failed to precompile IJulia [7073ff75-c697-5162-941a-fcdaad2a7d2a] to "/home/pkgeval/.julia/compiled/v1.12/IJulia/jl_IIOHzg". ERROR: LoadError: ZMQ.StateError("Cannot assign requested address") Stacktrace: [1] bind(socket::ZMQ.Socket, endpoint::String) @ ZMQ ~/.julia/packages/ZMQ/Lz9O7/src/socket.jl:91 [2] macro expansion @ ~/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:73 [inlined] [3] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [4] top-level scope @ ~/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:57 [5] include(mod::Module, _path::String) @ Base ./Base.jl:300 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [7] top-level scope @ stdin:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:485 [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [10] include_string @ ./loading.jl:2856 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [12] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:3 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile ZMQ [c2297ded-f4af-51ae-bb23-16f91089e4e1] to "/home/pkgeval/.julia/compiled/v1.12/ZMQ/jl_yxDcj5". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/IJulia/dR0lE/src/IJulia.jl:36 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/IJulia/dR0lE/src/IJulia.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/ijulia.jl:2 ┌ Info: └ RCall.conda_provided_r = true Test Summary: | Pass Fail Error Total Time RCall | 453 1 5 459 2m09.7s basic | 39 1 1 41 18.0s convert/base | 191 191 19.2s convert/missing | 28 28 2.2s convert/datetime | 86 86 6.3s convert/dataframe | 11 11 9.0s convert/categorical | 22 22 3.8s convert/formula | 16 16 11.4s convert/namedtuple | 10 10 2.0s convert/tuple | 11 11 0.4s macros | 17 17 1.0s namespaces | 1 1 0.3s repl | 20 2 22 30.0s IJulia | 1 1 25.8s ERROR: LoadError: Some tests did not pass: 453 passed, 1 failed, 5 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RCall/0ggIQ/test/runtests.jl:44 Testing failed after 163.29s ERROR: LoadError: Package RCall errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 363.93s: package requires a missing binary dependency