Package evaluation of PhysOcean on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T18:41:11.512


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.25s


################################################################################
# Installation
#

Installing PhysOcean...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [3725be50] + PhysOcean v0.6.10
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [d1d4a3ce] + BitFlags v0.1.9
  [179af706] + CFTime v0.1.4
  [944b1d66] + CodecZlib v0.7.8
  [1fbeeb36] + CommonDataModel v0.3.8
  [34da2185] + Compat v4.16.0
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [8bb1440f] + DelimitedFiles v1.9.1
⌅ [3c3547ce] + DiskArrays v0.3.23
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [c27321d9] + Glob v1.3.1
  [708ec375] + Gumbo v0.8.3
  [cd3eb016] + HTTP v1.10.15
  [692b3bcd] + JLLWrappers v1.7.0
  [8ac3fa9e] + LRUCache v1.6.2
  [e6f89c97] + LoggingExtras v1.1.0
  [3da0fdf6] + MPIPreferences v0.1.11
  [739be429] + MbedTLS v1.1.9
  [e1d29d7a] + Missings v1.2.0
⌃ [85f8d34a] + NCDatasets v0.14.0
  [6fe1bfb0] + OffsetArrays v1.16.0
  [4d8831e6] + OpenSSL v1.4.3
  [bac558e1] + OrderedCollections v1.8.0
  [3725be50] + PhysOcean v0.6.10
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [777ac1f9] + SimpleBufferStream v1.2.0
  [10745b16] + Statistics v1.11.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [5c2747f8] + URIs v1.5.1
  [0b7ba130] + Blosc_jll v1.21.7+0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [528830af] + Gumbo_jll v0.10.2+0
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.0+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [7243133f] + NetCDF_jll v401.900.300+0
  [fe0851c0] + OpenMPI_jll v5.0.7+1
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [02c8fc9c] + XML2_jll v2.13.6+1
  [ffd25f8a] + XZ_jll v5.6.4+1
  [3161d3a3] + Zstd_jll v1.5.7+1
  [477f73a3] + libaec_jll v1.1.3+0
  [337d8026] + libzip_jll v1.11.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.8.0+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+1
  [14a3606d] + MozillaCACerts_jll v2024.11.26
  [4536629a] + OpenBLAS_jll v0.3.28+3
  [83775a58] + Zlib_jll v1.3.1+1
  [8e850b90] + libblastrampoline_jll v5.11.2+0
  [8e850ede] + nghttp2_jll v1.63.0+1
  [3f19e933] + p7zip_jll v17.5.0+1
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 7.46s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 43.13s


################################################################################
# Testing
#

     Testing PhysOcean
      Status `/tmp/jl_sGUhL4/Project.toml`
  [3725be50] PhysOcean v0.6.10
  [10745b16] Statistics v1.11.1
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_sGUhL4/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [d1d4a3ce] BitFlags v0.1.9
  [179af706] CFTime v0.1.4
  [944b1d66] CodecZlib v0.7.8
  [1fbeeb36] CommonDataModel v0.3.8
  [34da2185] Compat v4.16.0
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [8bb1440f] DelimitedFiles v1.9.1
⌅ [3c3547ce] DiskArrays v0.3.23
  [460bff9d] ExceptionUnwrapping v0.1.11
  [c27321d9] Glob v1.3.1
  [708ec375] Gumbo v0.8.3
  [cd3eb016] HTTP v1.10.15
  [692b3bcd] JLLWrappers v1.7.0
  [8ac3fa9e] LRUCache v1.6.2
  [e6f89c97] LoggingExtras v1.1.0
  [3da0fdf6] MPIPreferences v0.1.11
  [739be429] MbedTLS v1.1.9
  [e1d29d7a] Missings v1.2.0
⌃ [85f8d34a] NCDatasets v0.14.0
  [6fe1bfb0] OffsetArrays v1.16.0
  [4d8831e6] OpenSSL v1.4.3
  [bac558e1] OrderedCollections v1.8.0
  [3725be50] PhysOcean v0.6.10
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [777ac1f9] SimpleBufferStream v1.2.0
  [10745b16] Statistics v1.11.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [5c2747f8] URIs v1.5.1
  [0b7ba130] Blosc_jll v1.21.7+0
  [6e34b625] Bzip2_jll v1.0.9+0
  [528830af] Gumbo_jll v0.10.2+0
  [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.0+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [5ced341a] Lz4_jll v1.10.1+0
  [7cb0a576] MPICH_jll v4.3.0+1
  [f1f71cc9] MPItrampoline_jll v5.5.3+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [7243133f] NetCDF_jll v401.900.300+0
  [fe0851c0] OpenMPI_jll v5.0.7+1
  [458c3c95] OpenSSL_jll v3.0.16+0
  [02c8fc9c] XML2_jll v2.13.6+1
  [ffd25f8a] XZ_jll v5.6.4+1
  [3161d3a3] Zstd_jll v1.5.7+1
  [477f73a3] libaec_jll v1.1.3+0
  [337d8026] libzip_jll v1.11.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.2.0+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.8.0+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+1
  [14a3606d] MozillaCACerts_jll v2024.11.26
  [4536629a] OpenBLAS_jll v0.3.28+3
  [83775a58] Zlib_jll v1.3.1+1
  [8e850b90] libblastrampoline_jll v5.11.2+0
  [8e850ede] nghttp2_jll v1.63.0+1
  [3f19e933] p7zip_jll v17.5.0+1
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
[ Info: Loading files from /tmp/jl_PAx2l0VIlW/ocldb1711456977.16388.CTD/ocldb1711456977.16388.CTD.nc
PhysOcean: Error During Test at /home/pkgeval/.julia/packages/PhysOcean/187Cp/test/runtests.jl:7
  Got exception outside of a @test
  LoadError: MethodError: Cannot `convert` an object of type Array{Float32, 0} to an object of type Float64
  The function `convert` exists, but no method is defined for this combination of argument types.
  
  Closest candidates are:
    convert(::Type{T}, !Matched::T) where T<:Number
     @ Base number.jl:6
    convert(::Type{T}, !Matched::T) where T
     @ Base Base_compiler.jl:133
    convert(::Type{T}, !Matched::AbstractChar) where T<:Number
     @ Base char.jl:192
    ...
  
  Stacktrace:
    [1] push!
      @ ./array.jl:1285 [inlined]
    [2] _append!
      @ ./array.jl:1366 [inlined]
    [3] append!(a::Vector{Float64}, iter::Vector{Array{Float32, 0}})
      @ Base ./array.jl:1357
    [4] (::PhysOcean.WorldOceanDatabase.var"#load!##0#load!##1"{String, Vector{Float64}, Vector{Float64}, Vector{Float64}, Vector{Float64}, Vector{DateTime}, Vector{String}, Int64, String})(nc::NCDatasets.NCDataset{Nothing})
      @ PhysOcean.WorldOceanDatabase ~/.julia/packages/PhysOcean/187Cp/src/WorldOceanDatabase.jl:474
    [5] NCDatasets.NCDataset(f::PhysOcean.WorldOceanDatabase.var"#load!##0#load!##1"{String, Vector{Float64}, Vector{Float64}, Vector{Float64}, Vector{Float64}, Vector{DateTime}, Vector{String}, Int64, String}, args::String; kwargs::@Kwargs{})
      @ NCDatasets ~/.julia/packages/NCDatasets/w3iru/src/dataset.jl:243
    [6] NCDataset
      @ ~/.julia/packages/NCDatasets/w3iru/src/dataset.jl:240 [inlined]
    [7] load!(dirname::String, indexname::String, varname::String, profiles::Vector{Float64}, lons::Vector{Float64}, lats::Vector{Float64}, zs::Vector{Float64}, times::Vector{DateTime}, ids::Vector{String})
      @ PhysOcean.WorldOceanDatabase ~/.julia/packages/PhysOcean/187Cp/src/WorldOceanDatabase.jl:451
    [8] load(T::Type, dirnames::Vector{String}, indexnames::Vector{String}, varname::String; prefixid::String)
      @ PhysOcean.WorldOceanDatabase ~/.julia/packages/PhysOcean/187Cp/src/WorldOceanDatabase.jl:505
    [9] load
      @ ~/.julia/packages/PhysOcean/187Cp/src/WorldOceanDatabase.jl:495 [inlined]
   [10] load(T::Type, basedir::String, varname::String; prefixid::String)
      @ PhysOcean.WorldOceanDatabase ~/.julia/packages/PhysOcean/187Cp/src/WorldOceanDatabase.jl:547
   [11] top-level scope
      @ ~/.julia/packages/PhysOcean/187Cp/test/test_wod.jl:12
   [12] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:301
   [13] macro expansion
      @ ~/.julia/packages/PhysOcean/187Cp/test/runtests.jl:227 [inlined]
   [14] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined]
   [15] top-level scope
      @ ~/.julia/packages/PhysOcean/187Cp/test/runtests.jl:9
   [16] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:301
   [17] top-level scope
      @ none:6
   [18] eval(m::Module, e::Any)
      @ Core ./boot.jl:485
   [19] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:295
   [20] _start()
      @ Base ./client.jl:558
  in expression starting at /home/pkgeval/.julia/packages/PhysOcean/187Cp/test/test_wod.jl:12
Test Summary: | Pass  Error  Total     Time
PhysOcean     |   47      1     48  1m45.6s
ERROR: LoadError: Some tests did not pass: 47 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/PhysOcean/187Cp/test/runtests.jl:7

Testing failed after 131.14s

ERROR: LoadError: Package PhysOcean errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481
  [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:300
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [12] _start()
    @ Base ./client.jl:558
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 215.84s: package tests unexpectedly errored