Package evaluation of Peridynamics on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T19:23:21.264 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.65s ################################################################################ # Installation # Installing Peridynamics... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [4dc47793] + Peridynamics v0.3.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [bc6b9049] + AbaqusReader v0.2.6 [79e6a3ab] + Adapt v4.3.0 [4fba245c] + ArrayInterface v7.18.0 [a9b6321e] + Atomix v1.1.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.3 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.13.0 [46192b85] + GPUArraysCore v0.2.0 [0e44f5e4] + Hwloc v3.3.0 [615f187c] + IfElse v0.1.1 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.34 [10f19ff3] + LayoutPointers v0.1.17 [9c8b4983] + LightXML v0.9.1 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [4d1e1d77] + Nullables v1.0.0 [4dc47793] + Peridynamics v0.3.3 [eebad327] + PkgVersion v0.3.3 [1c4d5385] + PointNeighbors v0.4.9 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [91464d47] + StableTasks v0.1.6 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [7792a7ef] + StrideArraysCore v0.5.7 [90a7ee08] + SysInfo v0.3.0 [811555cd] + ThreadPinning v1.0.2 [6f48bc29] + ThreadPinningCore v0.4.5 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.28 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [4004b06d] + VTKBase v1.0.1 [64499a7a] + WriteVTK v1.21.1 [e33a78d0] + Hwloc_jll v2.12.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+1 [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Installation completed after 5.86s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 40.67s ################################################################################ # Testing # Testing Peridynamics Status `/tmp/jl_ClanLT/Project.toml` [4c88cf16] Aqua v0.8.11 [4dc47793] Peridynamics v0.3.3 [f8b46487] TestItemRunner v1.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ClanLT/Manifest.toml` [bc6b9049] AbaqusReader v0.2.6 [79e6a3ab] Adapt v4.3.0 [4c88cf16] Aqua v0.8.11 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [adafc99b] CpuId v0.3.1 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.3 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [46192b85] GPUArraysCore v0.2.0 [0e44f5e4] Hwloc v3.3.0 [615f187c] IfElse v0.1.1 [692b3bcd] JLLWrappers v1.7.0 [63c18a36] KernelAbstractions v0.9.34 [10f19ff3] LayoutPointers v0.1.17 [9c8b4983] LightXML v0.9.1 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [4d1e1d77] Nullables v1.0.0 [4dc47793] Peridynamics v0.3.3 [eebad327] PkgVersion v0.3.3 [1c4d5385] PointNeighbors v0.4.9 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [91464d47] StableTasks v0.1.6 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [7792a7ef] StrideArraysCore v0.5.7 [90a7ee08] SysInfo v0.3.0 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [811555cd] ThreadPinning v1.0.2 [6f48bc29] ThreadPinningCore v0.4.5 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.28 [3bb67fe8] TranscodingStreams v0.11.3 [013be700] UnsafeAtomics v0.3.0 [4004b06d] VTKBase v1.0.1 [64499a7a] WriteVTK v1.21.1 [e33a78d0] Hwloc_jll v2.12.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.7+1 [02c8fc9c] XML2_jll v2.13.6+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Testing Running tests... Precompiling packages... Info Given Peridynamics was explicitly requested, output will be shown live  ┌ Warning: Error return code │ ret = -22 └ @ ThreadPinningCore.Internals ~/.julia/packages/ThreadPinningCore/fdkhT/src/internals.jl:173 WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in (::PointNeighbors.var"#parallel_foreach##8#parallel_foreach##9"{f, var"#52#range"})(Any, PointNeighbors.var"#parallel_foreach##6#parallel_foreach##7"{var"#53#threadsfor_fun#4"} where var"#53#threadsfor_fun#4", Any) at threadingconstructs.jl 106418.7 ms ✓ Peridynamics 1 dependency successfully precompiled in 108 seconds. 99 already precompiled. 1 dependency had output during precompilation: ┌ Peridynamics │ [Output was shown above] └ ┌ Warning: Error return code │ ret = -22 └ @ ThreadPinningCore.Internals ~/.julia/packages/ThreadPinningCore/fdkhT/src/internals.jl:173 ERROR: LoadError: InitError: Couldn't set the affinity on this system. Stacktrace: [1] setaffinity(mask::Vector{Int8}; threadid::Int64) @ ThreadPinningCore.Internals ~/.julia/packages/ThreadPinningCore/fdkhT/src/internals.jl:174 [2] setaffinity @ ~/.julia/packages/ThreadPinningCore/fdkhT/src/internals.jl:145 [inlined] [3] #pinthread#25 @ ~/.julia/packages/ThreadPinningCore/fdkhT/src/internals.jl:192 [inlined] [4] pinthread @ ~/.julia/packages/ThreadPinningCore/fdkhT/src/internals.jl:182 [inlined] [5] pinthreads(cpuids::Vector{Int64}; threadpool::Symbol, threadids::UnitRange{Int64}, nthreads::Nothing, force::Bool) @ ThreadPinningCore.Internals ~/.julia/packages/ThreadPinningCore/fdkhT/src/internals.jl:210 [6] pinthreads @ ~/.julia/packages/ThreadPinningCore/fdkhT/src/internals.jl:196 [inlined] [7] pinthreads(cpuids::Vector{Int64}; warn::Bool, force::Bool, kwargs::@Kwargs{}) @ ThreadPinning.Pinning ~/.julia/packages/ThreadPinning/qBVhU/src/pinning.jl:305 [8] pinthreads @ ~/.julia/packages/ThreadPinning/qBVhU/src/pinning.jl:292 [inlined] [9] #pinthreads#20 @ ~/.julia/packages/ThreadPinning/qBVhU/src/pinning.jl:352 [inlined] [10] pinthreads(symb::Symbol; kwargs::@Kwargs{force::Bool}) @ ThreadPinning.Pinning ~/.julia/packages/ThreadPinning/qBVhU/src/pinning.jl:346 [11] pinthreads @ ~/.julia/packages/ThreadPinning/qBVhU/src/pinning.jl:346 [inlined] [12] __init__() @ Peridynamics ~/.julia/packages/Peridynamics/LZzLb/src/Peridynamics.jl:36 [13] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1295 [16] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [17] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2121 [18] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2621 [19] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [20] macro expansion @ ./loading.jl:2412 [inlined] [21] macro expansion @ ./lock.jl:294 [inlined] [22] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [23] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [24] invoke_in_world @ ./essentials.jl:1087 [inlined] [25] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [26] eval(m::Module, e::Any) @ Core ./boot.jl:485 [27] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:94 [28] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 [29] top-level scope @ ~/.julia/packages/Peridynamics/LZzLb/test/runtests.jl:3 [30] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [31] top-level scope @ none:6 [32] eval(m::Module, e::Any) @ Core ./boot.jl:485 [33] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [34] _start() @ Base ./client.jl:558 during initialization of module Peridynamics in expression starting at /home/pkgeval/.julia/packages/Peridynamics/LZzLb/test/runtests.jl:3 Testing failed after 191.02s ERROR: LoadError: Package Peridynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 267.52s: package tests unexpectedly errored