Package evaluation of PDELib on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T01:57:34.744 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.5s ################################################################################ # Installation # Installing PDELib... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [89250b5f] + PDELib v0.3.0 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.27.10 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 ⌃ [4fba245c] + ArrayInterface v7.7.1 [30b0a656] + ArrayInterfaceCore v0.1.29 [dd5226c6] + ArrayInterfaceStaticArraysCore v0.1.4 ⌃ [4c555306] + ArrayLayouts v0.8.19 ⌅ [15f4f7f2] + AutoHashEquals v0.2.0 ⌅ [aae01518] + BandedMatrices v0.17.18 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [e2ed5e7c] + Bijections v0.1.9 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 ⌅ [187b0558] + ConstructionBase v1.5.6 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.118 ⌅ [ffbed154] + DocStringExtensions v0.8.6 ⌅ [5b8099bc] + DomainSets v0.5.14 ⌅ [7c1d4256] + DynamicPolynomials v0.4.6 [fdbdab4c] + ElasticArrays v1.2.12 [4e289a0a] + EnumX v1.0.4 [e2ba6199] + ExprTools v0.1.10 ⌅ [cfc395e8] + ExtendableGrids v0.9.17 ⌅ [95c220a8] + ExtendableSparse v0.9.6 [411431e0] + Extents v0.1.5 [5789e2e9] + FileIO v1.17.0 ⌅ [1a297f60] + FillArrays v0.13.11 ⌃ [6a86dc24] + FiniteDiff v2.23.1 [53c48c17] + FixedPointNumbers v0.8.5 [59287772] + Formatting v0.4.3 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [46192b85] + GPUArraysCore v0.1.5 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 ⌅ [0802c0ca] + GradientRobustMultiPhysics v0.10.4 [86223c79] + Graphs v1.12.0 ⌅ [5eed8a63] + GridVisualize v0.5.2 ⌅ [0b43b601] + Groebner v0.2.11 ⌅ [d5909c97] + GroupsCore v0.4.2 [34004b35] + HypergeometricFunctions v0.3.28 [ac1192a8] + HypertextLiteral v0.9.5 [88f59080] + ILUZero v0.2.0 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [18e54dd8] + IntegerMathUtils v0.1.2 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [ba0b0d4f] + Krylov v0.9.10 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [2ee39098] + LabelledArrays v1.15.1 ⌅ [984bce1d] + LambertW v0.4.6 ⌅ [23fbe1c1] + Latexify v0.15.21 [9c8b4983] + LightXML v0.9.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 ⌅ [7269a6da] + MeshIO v0.4.13 ⌅ [e9d8d322] + Metatheory v1.3.5 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 ⌅ [102ac46a] + MultivariatePolynomials v0.4.7 [d8a4904e] + MutableArithmetics v1.6.4 [77ba4419] + NaNMath v1.1.2 ⌅ [510215fc] + Observables v0.4.0 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 [89250b5f] + PDELib v0.3.0 [90014a1f] + PDMats v0.11.32 [d96e819e] + Parameters v0.12.3 ⌅ [eebad327] + PkgVersion v0.1.1 ⌃ [d236fae5] + PreallocationTools v0.4.24 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [fb686558] + RandomExtensions v0.4.4 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.32.3 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 ⌅ [0bca4576] + SciMLBase v1.81.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 ⌅ [57bfcd06] + SimplexGridFactory v0.5.20 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 ⌅ [47a9eef4] + SparseDiffTools v1.31.0 [e56a9233] + Sparspak v0.3.9 [276daf66] + SpecialFunctions v2.5.0 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 ⌅ [09ab397b] + StructArrays v0.6.18 ⌅ [d1185830] + SymbolicUtils v0.19.11 ⌅ [0c5d862f] + Symbolics v4.14.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 ⌅ [8ea1fca8] + TermInterface v0.2.3 [ac1d9e8a] + ThreadsX v0.1.12 [a759f4b9] + TimerOutputs v0.5.28 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [a2a6695c] + TreeViews v0.3.0 [410a4b4d] + Tricks v0.1.10 [3a884ed6] + UnPack v1.0.2 [4004b06d] + VTKBase v1.0.1 [19fa3120] + VertexSafeGraphs v0.2.0 ⌅ [82b139dc] + VoronoiFVM v0.18.10 [64499a7a] + WriteVTK v1.21.1 [700de1a5] + ZygoteRules v0.2.7 [5ae413db] + EarCut_jll v2.2.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.21s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: Pluto Failed to precompile Pluto [c3e4b0f8-55cb-11ea-2926-15256bba5781] to "/home/pkgeval/.julia/compiled/v1.12/Pluto/jl_6zSCzX". ERROR: LoadError: MethodError: no method matching pretty_stackcall(::Base.StackTraces.StackFrame, ::Core.CodeInstance) The function `pretty_stackcall` exists, but no method is defined for this combination of argument types. Closest candidates are: pretty_stackcall(::Base.StackTraces.StackFrame, !Matched::Module) @ Pluto ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/display/Exception.jl:124 pretty_stackcall(::Base.StackTraces.StackFrame, !Matched::Method) @ Pluto ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/display/Exception.jl:120 pretty_stackcall(::Base.StackTraces.StackFrame, !Matched::Core.MethodInstance) @ Pluto ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/display/Exception.jl:107 ... Stacktrace: [1] (::Pluto.PlutoRunner.var"#70#71")(s::Base.StackTraces.StackFrame) @ Pluto.PlutoRunner ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/display/Exception.jl:65 [2] iterate @ ./generator.jl:48 [inlined] [3] collect_to!(dest::Vector{Dict{Symbol, Any}}, itr::Base.Generator{Vector{Base.StackTraces.StackFrame}, Pluto.PlutoRunner.var"#70#71"}, offs::Int64, st::Int64) @ Base ./array.jl:848 [4] collect_to_with_first!(dest::Vector{Dict{Symbol, Any}}, v1::Dict{Symbol, Any}, itr::Base.Generator{Vector{Base.StackTraces.StackFrame}, Pluto.PlutoRunner.var"#70#71"}, st::Int64) @ Base ./array.jl:826 [5] _collect(c::Vector{Base.StackTraces.StackFrame}, itr::Base.Generator{Vector{Base.StackTraces.StackFrame}, Pluto.PlutoRunner.var"#70#71"}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:820 [6] collect_similar(cont::Vector{Base.StackTraces.StackFrame}, itr::Base.Generator{Vector{Base.StackTraces.StackFrame}, Pluto.PlutoRunner.var"#70#71"}) @ Base ./array.jl:732 [7] map(f::Function, A::Vector{Base.StackTraces.StackFrame}) @ Base ./abstractarray.jl:3410 [8] format_output(val::CapturedException; context::IOContext{Base.DevNull}) @ Pluto.PlutoRunner ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/display/Exception.jl:60 [9] format_output @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/display/Exception.jl:36 [inlined] [10] #53 @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/display/format_output.jl:45 [inlined] [11] with_io_to_logs(f::Pluto.PlutoRunner.var"#53#54"{Base.UUID, Base.UUID, Module, CapturedException, Dict{Tuple{UInt64, Int64}, Int64}}; enabled::Bool, loglevel::Base.CoreLogging.LogLevel) @ Pluto.PlutoRunner ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/io/stdout.jl:64 [12] with_io_to_logs @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/io/stdout.jl:11 [inlined] [13] #118 @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/io/logging.jl:129 [inlined] [14] with_logstate(f::Pluto.PlutoRunner.var"#118#119"{Bool, Base.CoreLogging.LogLevel, Pluto.PlutoRunner.var"#53#54"{Base.UUID, Base.UUID, Module, CapturedException, Dict{Tuple{UInt64, Int64}, Int64}}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [15] with_logger(f::Function, logger::Pluto.PlutoRunner.PlutoCellLogger) @ Base.CoreLogging ./logging/logging.jl:632 [16] #with_logger_and_io_to_logs#116 @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/io/logging.jl:128 [inlined] [17] with_logger_and_io_to_logs @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/io/logging.jl:127 [inlined] [18] formatted_result_of(notebook_id::Base.UUID, cell_id::Base.UUID, ends_with_semicolon::Bool, known_published_objects::Vector{String}, showmore::Nothing, workspace::Module; capture_stdout::Bool) @ Pluto.PlutoRunner ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/display/format_output.jl:44 [19] macro expansion @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/precompile.jl:18 [inlined] [20] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [21] top-level scope @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/precompile.jl:102 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [23] top-level scope @ ~/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/PlutoRunner.jl:86 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [25] top-level scope @ ~/.julia/packages/Pluto/PiwLs/src/Pluto.jl:52 [26] include(mod::Module, _path::String) @ Base ./Base.jl:300 [27] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [28] top-level scope @ stdin:6 [29] eval(m::Module, e::Any) @ Core ./boot.jl:485 [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [31] include_string @ ./loading.jl:2856 [inlined] [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [33] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/precompile.jl:6 in expression starting at /home/pkgeval/.julia/packages/Pluto/PiwLs/src/runner/PlutoRunner/src/PlutoRunner.jl:1 in expression starting at /home/pkgeval/.julia/packages/Pluto/PiwLs/src/Pluto.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 671.42s ################################################################################ # Testing # Testing PDELib Status `/tmp/jl_HS00oC/Project.toml` [89250b5f] PDELib v0.3.0 [c3e4b0f8] Pluto v0.20.5 [f7e6ffb2] Triangulate v2.4.0 [b77e0a4c] InteractiveUtils v1.11.0 [d6f4376e] Markdown v1.11.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HS00oC/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.27.10 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [30b0a656] ArrayInterfaceCore v0.1.29 [dd5226c6] ArrayInterfaceStaticArraysCore v0.1.4 ⌃ [4c555306] ArrayLayouts v0.8.19 ⌅ [15f4f7f2] AutoHashEquals v0.2.0 ⌅ [aae01518] BandedMatrices v0.17.18 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [e2ed5e7c] Bijections v0.1.9 [d1d4a3ce] BitFlags v0.1.9 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [5218b696] Configurations v0.17.6 ⌅ [187b0558] ConstructionBase v1.5.6 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.118 ⌅ [ffbed154] DocStringExtensions v0.8.6 ⌅ [5b8099bc] DomainSets v0.5.14 ⌅ [7c1d4256] DynamicPolynomials v0.4.6 [fdbdab4c] ElasticArrays v1.2.12 [4e289a0a] EnumX v1.0.4 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [21656369] ExpressionExplorer v1.1.1 [55351af7] ExproniconLite v0.10.14 ⌅ [cfc395e8] ExtendableGrids v0.9.17 ⌅ [95c220a8] ExtendableSparse v0.9.6 [411431e0] Extents v0.1.5 [5789e2e9] FileIO v1.17.0 ⌅ [1a297f60] FillArrays v0.13.11 ⌃ [6a86dc24] FiniteDiff v2.23.1 [53c48c17] FixedPointNumbers v0.8.5 [59287772] Formatting v0.4.3 [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [fb4132e2] FuzzyCompletions v0.5.5 ⌅ [46192b85] GPUArraysCore v0.1.5 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 ⌅ [0802c0ca] GradientRobustMultiPhysics v0.10.4 [86223c79] Graphs v1.12.0 ⌅ [5eed8a63] GridVisualize v0.5.2 ⌅ [0b43b601] Groebner v0.2.11 ⌅ [d5909c97] GroupsCore v0.4.2 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.28 [ac1192a8] HypertextLiteral v0.9.5 [88f59080] ILUZero v0.2.0 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [18e54dd8] IntegerMathUtils v0.1.2 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [ba0b0d4f] Krylov v0.9.10 [b964fa9f] LaTeXStrings v1.4.0 ⌃ [2ee39098] LabelledArrays v1.15.1 ⌅ [984bce1d] LambertW v0.4.6 ⌅ [23fbe1c1] Latexify v0.15.21 [0e77f7df] LazilyInitializedFields v1.3.0 [9c8b4983] LightXML v0.9.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [6c6e2e6c] MIMEs v1.1.0 [1914dd2f] MacroTools v0.5.15 [36869731] Malt v1.1.2 [739be429] MbedTLS v1.1.9 ⌅ [7269a6da] MeshIO v0.4.13 ⌅ [e9d8d322] Metatheory v1.3.5 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [99f44e22] MsgPack v1.2.1 ⌅ [102ac46a] MultivariatePolynomials v0.4.7 [d8a4904e] MutableArithmetics v1.6.4 [77ba4419] NaNMath v1.1.2 ⌅ [510215fc] Observables v0.4.0 [6fe1bfb0] OffsetArrays v1.16.0 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [89250b5f] PDELib v0.3.0 [90014a1f] PDMats v0.11.32 [d96e819e] Parameters v0.12.3 ⌅ [eebad327] PkgVersion v0.1.1 [c3e4b0f8] Pluto v0.20.5 [72656b73] PlutoDependencyExplorer v1.2.0 ⌃ [d236fae5] PreallocationTools v0.4.24 [91cefc8d] PrecompileSignatures v3.0.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [fb686558] RandomExtensions v0.4.4 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v2.32.3 [189a3867] Reexport v1.2.2 [42d2dcc6] Referenceables v0.1.3 [2792f1a3] RegistryInstances v0.1.0 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 ⌅ [0bca4576] SciMLBase v1.81.0 [6c6a2e73] Scratch v1.2.1 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 ⌅ [57bfcd06] SimplexGridFactory v0.5.20 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.1 ⌅ [47a9eef4] SparseDiffTools v1.31.0 [e56a9233] Sparspak v0.3.9 [276daf66] SpecialFunctions v2.5.0 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 ⌅ [09ab397b] StructArrays v0.6.18 ⌅ [d1185830] SymbolicUtils v0.19.11 ⌅ [0c5d862f] Symbolics v4.14.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 ⌅ [8ea1fca8] TermInterface v0.2.3 [ac1d9e8a] ThreadsX v0.1.12 [a759f4b9] TimerOutputs v0.5.28 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [a2a6695c] TreeViews v0.3.0 [f7e6ffb2] Triangulate v2.4.0 [410a4b4d] Tricks v0.1.10 [5c2747f8] URIs v1.5.1 [3a884ed6] UnPack v1.0.2 [4004b06d] VTKBase v1.0.1 [19fa3120] VertexSafeGraphs v0.2.0 ⌅ [82b139dc] VoronoiFVM v0.18.10 [64499a7a] WriteVTK v1.21.1 [700de1a5] ZygoteRules v0.2.7 [5ae413db] EarCut_jll v2.2.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [5639c1d2] Triangle_jll v1.6.2+0 [02c8fc9c] XML2_jll v2.13.6+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 3318.5 ms ? DomainSets 13932.6 ms ✓ LabelledArrays 51991.5 ms ✓ SymbolicUtils 8742.6 ms ? Symbolics 26207.3 ms ? GradientRobustMultiPhysics 28104.4 ms ? VoronoiFVM Info Given PDELib was explicitly requested, output will be shown live  WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 42839.5 ms ? PDELib 2 dependencies successfully precompiled in 183 seconds. 227 already precompiled. 5 dependencies failed but may be precompilable after restarting julia 5 dependencies had output during precompilation: ┌ PDELib │ [Output was shown above] └ ┌ Symbolics │ WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DomainSets │ WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ GradientRobustMultiPhysics │ WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ VoronoiFVM │ WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 7482.5 ms ? DomainSets 8209.0 ms ? Symbolics Info Given VoronoiFVM was explicitly requested, output will be shown live  WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 25999.3 ms ? VoronoiFVM WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 3142.2 ms ? DomainSets Info Given Symbolics was explicitly requested, output will be shown live  WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 8691.4 ms ? Symbolics WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... Info Given DomainSets was explicitly requested, output will be shown live  WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 3099.9 ms ? DomainSets WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition isapprox(IntervalSets.AbstractInterval{T} where T, IntervalSets.AbstractInterval{T} where T) in module IntervalSets at /home/pkgeval/.julia/packages/IntervalSets/kyCuf/src/IntervalSets.jl:296 overwritten in module DomainSets at /home/pkgeval/.julia/packages/DomainSets/aafhp/src/domains/interval.jl:52. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading Symbolics -> Symbolics && VoronoiFVM && PDELib") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2209 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2217 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2479 [4] macro expansion @ ./loading.jl:2412 [inlined] [5] macro expansion @ ./lock.jl:294 [inlined] [6] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [7] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [8] invoke_in_world @ ./essentials.jl:1087 [inlined] [9] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [11] top-level scope @ ~/.julia/packages/Symbolics/UrqtQ/src/Symbolics.jl:106 [12] include(mod::Module, _path::String) @ Base ./Base.jl:300 [13] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2712 [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [15] macro expansion @ ./loading.jl:2412 [inlined] [16] macro expansion @ ./lock.jl:294 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [18] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [19] invoke_in_world @ ./essentials.jl:1087 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [21] top-level scope @ ~/.julia/packages/VoronoiFVM/LmuTr/src/VoronoiFVM.jl:34 [22] include(mod::Module, _path::String) @ Base ./Base.jl:300 [23] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2712 [24] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [25] macro expansion @ ./loading.jl:2412 [inlined] [26] macro expansion @ ./lock.jl:294 [inlined] [27] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [28] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [29] invoke_in_world @ ./essentials.jl:1087 [inlined] [30] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [31] include(mod::Module, _path::String) @ Base ./Base.jl:300 [32] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2712 [33] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [34] macro expansion @ ./loading.jl:2412 [inlined] [35] macro expansion @ ./lock.jl:294 [inlined] [36] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [37] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [38] invoke_in_world @ ./essentials.jl:1087 [inlined] [39] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [40] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [41] top-level scope @ none:6 [42] eval(m::Module, e::Any) @ Core ./boot.jl:485 [43] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [44] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Symbolics/UrqtQ/src/domains.jl:2 in expression starting at /home/pkgeval/.julia/packages/Symbolics/UrqtQ/src/Symbolics.jl:1 in expression starting at /home/pkgeval/.julia/packages/VoronoiFVM/LmuTr/src/VoronoiFVM.jl:1 in expression starting at /home/pkgeval/.julia/packages/PDELib/XK32d/src/PDELib.jl:1 in expression starting at /home/pkgeval/.julia/packages/PDELib/XK32d/test/runtests.jl:2 Testing failed after 464.46s ERROR: LoadError: Package PDELib errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1184.33s: illegal method overwrites during precompilation