Package evaluation of NetCDFTools on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T20:26:24.005 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.03s ################################################################################ # Installation # Installing NetCDFTools... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [13b2da74] + NetCDFTools v0.2.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [179af706] + CFTime v0.1.4 [324d7699] + CategoricalArrays v0.10.8 [1fbeeb36] + CommonDataModel v0.3.8 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [3c3547ce] + DiskArrays v0.3.23 [ffbed154] + DocStringExtensions v0.9.3 [c27321d9] + Glob v1.3.1 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [e58298cb] + Ipaper v0.2.4 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [fcefd6c4] + LambdaFn v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 ⌃ [85f8d34a] + NCDatasets v0.14.0 [13b2da74] + NetCDFTools v0.2.1 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3a884ed6] + UnPack v1.0.2 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.7+1 [458c3c95] + OpenSSL_jll v3.0.16+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 255.13s ################################################################################ # Testing # Testing NetCDFTools Status `/tmp/jl_TDKrnu/Project.toml` [179af706] CFTime v0.1.4 [a93c6f00] DataFrames v1.7.0 [ffbed154] DocStringExtensions v0.9.3 [e58298cb] Ipaper v0.2.4 ⌃ [85f8d34a] NCDatasets v0.14.0 [13b2da74] NetCDFTools v0.2.1 [d96e819e] Parameters v0.12.3 [aea7be01] PrecompileTools v1.2.1 [92933f4c] ProgressMeter v1.10.2 [189a3867] Reexport v1.2.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_TDKrnu/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [179af706] CFTime v0.1.4 [324d7699] CategoricalArrays v0.10.8 [1fbeeb36] CommonDataModel v0.3.8 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [3c3547ce] DiskArrays v0.3.23 [ffbed154] DocStringExtensions v0.9.3 [c27321d9] Glob v1.3.1 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [e58298cb] Ipaper v0.2.4 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [fcefd6c4] LambdaFn v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 ⌃ [85f8d34a] NCDatasets v0.14.0 [13b2da74] NetCDFTools v0.2.1 [6fe1bfb0] OffsetArrays v1.16.0 [bac558e1] OrderedCollections v1.8.0 [d96e819e] Parameters v0.12.3 [eebad327] PkgVersion v0.3.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3a884ed6] UnPack v1.0.2 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [fe0851c0] OpenMPI_jll v5.0.7+1 [458c3c95] OpenSSL_jll v3.0.16+0 [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.6.4+1 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Reading data... 9.097686 seconds (8.85 M allocations: 493.284 MiB, 2.17% gc time, 99.84% compilation time: 18% of which was recompilation) Writing data... 7.387071 seconds (6.43 M allocations: 324.156 MiB, 1.17% gc time, 99.78% compilation time: 39% of which was recompilation) Test Summary: | Pass Total Time nc_combine | 1 1 29.9s Reading dims... 0.001094 seconds (1.19 k allocations: 74.516 KiB) Reading data... 2.225592 seconds (4.23 M allocations: 227.311 MiB, 2.51% gc time, 99.97% compilation time: 5% of which was recompilation) Writing data... 1.187676 seconds (561.28 k allocations: 28.959 MiB, 99.56% compilation time: 80% of which was recompilation) Test Summary: | Pass Total Time nc_subset | 1 1 8.5s Array{Float64, 3} | (70, 40, 365) | 7.8 Mb [running] : test_year.nc Reading data... Processing ... 5.552184 seconds (1.43 M allocations: 73.382 MiB, 99.89% compilation time) Writing data... 0.085258 seconds (3.04 k allocations: 169.227 KiB, 94.75% compilation time: 80% of which was recompilation) [running] : test_mon.nc Reading data... Processing ... 0.008593 seconds (88 allocations: 270.258 KiB) Writing data... 0.003586 seconds (912 allocations: 303.977 KiB) Test Summary: | Pass Total Time nc_agg | 2 2 22.1s Test Summary: | Pass Total Time updateMask | 2 2 4.0s Test Summary: | Pass Total Time split_chunk | 4 4 2.1s Test Summary: | Pass Total Time weighted_nanmean | 2 2 1.0s Test Summary: | Pass Total Time azimuth | 8 8 0.1s Progress: 1%|▋ | ETA: 0:09:34 Progress: 5%|██ | ETA: 0:02:50 Progress: 16%|██████▊ | ETA: 0:00:46 Progress: 30%|████████████▎ | ETA: 0:00:22 Progress: 42%|█████████████████▎ | ETA: 0:00:13 Progress: 54%|██████████████████████▎ | ETA: 0:00:08 Progress: 62%|█████████████████████████▌ | ETA: 0:00:06 Progress: 69%|████████████████████████████▏ | ETA: 0:00:04 Progress: 76%|███████████████████████████████ | ETA: 0:00:03 Progress: 86%|███████████████████████████████████▍ | ETA: 0:00:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 Progress: 12%|█████ | ETA: 0:00:01 Progress: 25%|██████████▎ | ETA: 0:00:01 Progress: 37%|███████████████▎ | ETA: 0:00:01 Progress: 49%|███████████████████▉ | ETA: 0:00:00 Progress: 59%|████████████████████████ | ETA: 0:00:00 Progress: 66%|███████████████████████████ | ETA: 0:00:00 Progress: 72%|█████████████████████████████▋ | ETA: 0:00:00 Progress: 81%|█████████████████████████████████▏ | ETA: 0:00:00 Progress: 93%|██████████████████████████████████████▏ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▋ | ETA: 0:05:56 Progress: 9%|███▌ | ETA: 0:00:57 Progress: 16%|██████▌ | ETA: 0:00:29 Progress: 26%|██████████▌ | ETA: 0:00:16 Progress: 36%|██████████████▉ | ETA: 0:00:10 Progress: 47%|███████████████████▍ | ETA: 0:00:06 Progress: 56%|███████████████████████▏ | ETA: 0:00:05 Progress: 63%|█████████████████████████▊ | ETA: 0:00:04 Progress: 69%|████████████████████████████▏ | ETA: 0:00:03 Progress: 76%|███████████████████████████████ | ETA: 0:00:02 Progress: 86%|███████████████████████████████████▏ | ETA: 0:00:01 Progress: 97%|███████████████████████████████████████▉ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Progress: 1%|▋ | ETA: 0:00:20 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 0.804217 seconds (346.78 k allocations: 19.315 MiB, 95.61% compilation time: 1% of which was recompilation) Test Summary: | Pass Total Time spInterp | 3 3 26.2s Test Summary: | Pass Total Time nanmean | 2 2 0.1s Progress: 25%|██████████▎ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time bilinear | 3 3 6.1s Test Summary: | Pass Total Time bilinear vs. cdo | 1 1 5.5s Test Summary: | Pass Total Time nc_date | 3 3 0.1s ncatt_put: Error During Test at /home/pkgeval/.julia/packages/NetCDFTools/thncB/test/test-ncatt.jl:1 Got exception outside of a @test NetCDF error: Opening path /home/pkgeval/.julia/packages/NetCDFTools/thncB//data/HI_tasmax_day_ACCESS-CM2_historical_r1i1p1f1_gn_18500101.nc: NetCDF: HDF error (NetCDF error code: -101) Stacktrace: [1] nc_open(path::String, mode::UInt16) @ NCDatasets ~/.julia/packages/NCDatasets/w3iru/src/netcdf_c.jl:274 [2] NCDatasets.NCDataset(filename::String, mode::String; format::Symbol, share::Bool, diskless::Bool, persist::Bool, memory::Nothing, attrib::Vector{Any}) @ NCDatasets ~/.julia/packages/NCDatasets/w3iru/src/dataset.jl:205 [3] NCDataset @ ~/.julia/packages/NCDatasets/w3iru/src/dataset.jl:165 [inlined] [4] #nc_open#14 @ ~/.julia/packages/NetCDFTools/thncB/src/nc_info.jl:21 [inlined] [5] nc_open(f::String, args::String) @ NetCDFTools ~/.julia/packages/NetCDFTools/thncB/src/nc_info.jl:20 [6] nc_open(::NetCDFTools.var"#ncatt_put##0#ncatt_put##1"{Dict{String, String}}, ::String, ::Vararg{String}; kwargs::@Kwargs{}) @ NetCDFTools ~/.julia/packages/NetCDFTools/thncB/src/nc_info.jl:25 [7] nc_open @ ~/.julia/packages/NetCDFTools/thncB/src/nc_info.jl:24 [inlined] [8] ncatt_put(f::String, atts::Dict{String, String}) @ NetCDFTools ~/.julia/packages/NetCDFTools/thncB/src/ncatt_put.jl:9 [9] top-level scope @ ~/.julia/packages/NetCDFTools/thncB/test/test-ncatt.jl:2 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [11] macro expansion @ ~/.julia/packages/NetCDFTools/thncB/test/test-ncatt.jl:4 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [13] top-level scope @ ~/.julia/packages/NetCDFTools/thncB/test/runtests.jl:18 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core ./boot.jl:485 [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [18] _start() @ Base ./client.jl:558 Test Summary: | Error Total Time ncatt_put | 1 1 4.5s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NetCDFTools/thncB/test/test-ncatt.jl:1 in expression starting at /home/pkgeval/.julia/packages/NetCDFTools/thncB/test/runtests.jl:18 Testing failed after 147.28s ERROR: LoadError: Package NetCDFTools errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 441.97s: package tests unexpectedly errored