Package evaluation of NestedGraphs on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T13:31:07.994 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.18s ################################################################################ # Installation # Installing NestedGraphs... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [03c36417] + NestedGraphs v0.2.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [ec485272] + ArnoldiMethod v0.4.0 [34da2185] + Compat v4.16.0 [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.3 [86223c79] + Graphs v1.12.0 [d25df0c9] + Inflate v0.1.5 [1914dd2f] + MacroTools v0.5.15 [03c36417] + NestedGraphs v0.2.3 [bac558e1] + OrderedCollections v1.8.0 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [699a6c99] + SimpleTraits v0.9.4 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Installation completed after 1.17s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ MethodError: no method matching prune_manifest(::Pkg.Types.Manifest, ::Vector{UUID}) │ The function `prune_manifest` exists, but no method is defined for this combination of argument types. │ │ Closest candidates are: │ prune_manifest(::Pkg.Types.Manifest, !Matched::Set{UUID}) │ @ Pkg /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1176 │ prune_manifest(!Matched::Pkg.Types.EnvCache) │ @ Pkg /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1155 │ │ Stacktrace: │ [1] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:40 │ [2] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:9 │ [3] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:300 │ [5] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:329 │ [6] _start() │ @ Base ./client.jl:558 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 6616.0 ms ✓ NestedGraphs 1 dependency successfully precompiled in 8 seconds. 39 already precompiled. Precompilation completed after 26.14s ################################################################################ # Testing # Testing NestedGraphs Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_yMGrn8/Project.toml` [4c88cf16] ↑ Aqua v0.8.7 ⇒ v0.8.11 [86223c79] ↑ Graphs v1.11.0 ⇒ v1.12.0 [c3a54625] ↑ JET v0.9.0 ⇒ v0.9.18 [626554b9] ↑ MetaGraphs v0.7.2 ⇒ v0.8.0 [03c36417] ~ NestedGraphs v0.2.2 `~/.julia/packages/NestedGraphs/3fYbM` ⇒ v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM` [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_yMGrn8/Manifest.toml` [4c88cf16] ↑ Aqua v0.8.7 ⇒ v0.8.11 [da1fd8a2] ↑ CodeTracking v1.3.5 ⇒ v1.3.6 [34da2185] ↑ Compat v4.15.0 ⇒ v4.16.0 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22 [5789e2e9] ↑ FileIO v1.16.3 ⇒ v1.17.0 [86223c79] ↑ Graphs v1.11.0 ⇒ v1.12.0 [d25df0c9] ↑ Inflate v0.1.4 ⇒ v0.1.5 [c3a54625] ↑ JET v0.9.0 ⇒ v0.9.18 ⌅ [033835bb] ↑ JLD2 v0.4.48 ⇒ v0.4.54 [aa1ae85d] ↑ JuliaInterpreter v0.9.31 ⇒ v0.9.42 [70703baa] + JuliaSyntax v0.4.10 [6f1432cf] ↑ LoweredCodeUtils v2.4.6 ⇒ v3.1.0 [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.15 [626554b9] ↑ MetaGraphs v0.7.2 ⇒ v0.8.0 [03c36417] ~ NestedGraphs v0.2.2 `~/.julia/packages/NestedGraphs/3fYbM` ⇒ v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM` [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.0 [189a3867] - Reexport v1.2.2 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [90137ffa] ↑ StaticArrays v1.9.4 ⇒ v1.9.13 [1e83bf80] ↑ StaticArraysCore v1.4.2 ⇒ v1.4.3 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [3bb67fe8] ↑ TranscodingStreams v0.10.8 ⇒ v0.11.3 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] ~ Distributed ⇒ v1.11.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.12.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] - REPL [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] ~ SharedArrays ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.2.0+0 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.6.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.8.0+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.6+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2024.11.26 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.28+3 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.8.0+1 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.11.2+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.63.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_yMGrn8/Project.toml` [4c88cf16] Aqua v0.8.11 [d091dd56] AttributeGraphs v0.3.0 [86223c79] Graphs v1.12.0 [c3a54625] JET v0.9.18 [626554b9] MetaGraphs v0.8.0 ⌃ [fa8bd995] MetaGraphsNext v0.6.0 [03c36417] NestedGraphs v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM` [699a6c99] SimpleTraits v0.9.4 [98d24dd4] TestSetExtensions v3.0.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_yMGrn8/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [4c88cf16] Aqua v0.8.11 [ec485272] ArnoldiMethod v0.4.0 [d091dd56] AttributeGraphs v0.3.0 [da1fd8a2] CodeTracking v1.3.6 [34da2185] Compat v4.16.0 [864edb3b] DataStructures v0.18.22 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.3 [5789e2e9] FileIO v1.17.0 [86223c79] Graphs v1.12.0 [d25df0c9] Inflate v0.1.5 [c3a54625] JET v0.9.18 ⌅ [033835bb] JLD2 v0.4.54 [aa1ae85d] JuliaInterpreter v0.9.42 [70703baa] JuliaSyntax v0.4.10 [6f1432cf] LoweredCodeUtils v3.1.0 [1914dd2f] MacroTools v0.5.15 [626554b9] MetaGraphs v0.8.0 ⌃ [fa8bd995] MetaGraphsNext v0.6.0 [03c36417] NestedGraphs v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM` [bac558e1] OrderedCollections v1.8.0 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.4 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [98d24dd4] TestSetExtensions v3.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 3586.5 ms ✓ NestedGraphs → NestedGraphsAttributeGraphsExt 1 dependency successfully precompiled in 4 seconds. 41 already precompiled. Precompiling packages... 11247.5 ms ✓ MetaGraphs 1 dependency successfully precompiled in 12 seconds. 52 already precompiled. Precompiling packages... 13440.2 ms ✓ NestedGraphs → NestedGraphsMetaGraphsExt 1 dependency successfully precompiled in 14 seconds. 56 already precompiled. Precompiling packages... 12979.2 ms ✓ MetaGraphsNext 1 dependency successfully precompiled in 13 seconds. 52 already precompiled. Precompiling packages... 9373.3 ms ✓ NestedGraphs → NestedGraphsMetaGraphsNextExt 1 dependency successfully precompiled in 10 seconds. 56 already precompiled. Precompiling packages... Info Given JET was explicitly requested, output will be shown live  WARNING: could not import Compiler.istopfunction into JET ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET` Stacktrace:  [1] top-level scope  @ ~/.julia/packages/JET/sQkqi/src/JETBase.jl:220  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:301  [3] top-level scope  @ ~/.julia/packages/JET/sQkqi/src/JET.jl:36  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:300  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2995  [6] top-level scope  @ stdin:6  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:485  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [9] include_string  @ ./loading.jl:2856 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:327  [11] _start()  @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JETBase.jl:220 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JET.jl:1 in expression starting at stdin:6 ✗ JET 0 dependencies successfully precompiled in 11 seconds. 35 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: JET Failed to precompile JET [c3a54625-cd67-489e-a8e7-0a5a0ff4e31b] to "/home/pkgeval/.julia/compiled/v1.12/JET/jl_47MVkU". WARNING: could not import Compiler.istopfunction into JET ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET` Stacktrace: [1] top-level scope @ ~/.julia/packages/JET/sQkqi/src/JETBase.jl:220 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [3] top-level scope @ ~/.julia/packages/JET/sQkqi/src/JET.jl:36 [4] include(mod::Module, _path::String) @ Base ./Base.jl:300 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [6] top-level scope @ stdin:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:485 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [9] include_string @ ./loading.jl:2856 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [11] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JETBase.jl:220 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JET.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/NestedGraphs/3fYbM/test/runtests.jl:4 Testing failed after 88.51s ERROR: LoadError: Package NestedGraphs errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 143.89s: package fails to precompile