Package evaluation of MixedAnova on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T23:27:58.813 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.03s ################################################################################ # Installation # Installing MixedAnova... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [72e9ff3b] + MixedAnova v0.5.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [6e4b80f9] + BenchmarkTools v1.6.0 [c3b6d118] + BitIntegers v0.3.4 [523fee87] + CodecBzip2 v0.8.5 [5ba52731] + CodecLz4 v0.4.5 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.2 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [4e289a0a] + EnumX v1.0.4 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.13.0 ⌃ [9d5cd8c9] + FixedEffectModels v1.8.0 [c8885935] + FixedEffects v2.4.0 [f6369f11] + ForwardDiff v0.10.38 ⌃ [38e38edf] + GLM v1.8.3 [6407cd72] + GroupedArrays v0.3.3 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [b8f27783] + MathOptInterface v1.38.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [72e9ff3b] + MixedAnova v0.5.2 ⌃ [ff71e718] + MixedModels v4.8.2 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.4 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.2 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.3.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.4.0+2025a [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [f269a46b] + TimeZones v1.21.3 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] + Vcov v0.7.1 [6e34b625] + Bzip2_jll v1.0.9+0 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 122.48s ################################################################################ # Testing # Testing MixedAnova Status `/tmp/jl_sd7mAm/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.7.0 ⌃ [38e38edf] GLM v1.8.3 [72e9ff3b] MixedAnova v0.5.2 ⌃ [ff71e718] MixedModels v4.8.2 [ce6b1742] RDatasets v0.7.7 [8dfed614] Test v1.11.0 Status `/tmp/jl_sd7mAm/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [6e4b80f9] BenchmarkTools v1.6.0 [c3b6d118] BitIntegers v0.3.4 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [523fee87] CodecBzip2 v0.8.5 [5ba52731] CodecLz4 v0.4.5 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [861a8166] Combinatorics v1.0.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [4e289a0a] EnumX v1.0.4 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 ⌃ [9d5cd8c9] FixedEffectModels v1.8.0 [c8885935] FixedEffects v2.4.0 [f6369f11] ForwardDiff v0.10.38 ⌃ [38e38edf] GLM v1.8.3 [6407cd72] GroupedArrays v0.3.3 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [b8f27783] MathOptInterface v1.38.0 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [72e9ff3b] MixedAnova v0.5.2 ⌃ [ff71e718] MixedModels v4.8.2 [78c3b35d] Mocking v0.8.1 [d8a4904e] MutableArithmetics v1.6.4 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.2 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 ⌅ [df47a6cb] RData v0.8.3 [ce6b1742] RDatasets v0.7.7 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.3.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.1 [354b36f9] StringViews v1.3.4 [856f2bd8] StructTypes v1.11.0 [dc5dba14] TZJData v1.4.0+2025a [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [f269a46b] TimeZones v1.21.3 [3bb67fe8] TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] Vcov v0.7.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Method definition coefnames(MixedAnova.AnovaResult{T, MixedAnova.FTest, N} where N) where {T<:(StatsModels.TableRegressionModel{var"#s12", T} where T where var"#s12"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))})} in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:3 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:12. WARNING: Method definition coefnames(StatsModels.TableRegressionModel{var"#s12", T} where T where var"#s12"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))}, Base.Val{:anova}) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:9 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:18. Precompiling packages... Info Given MixedModels was explicitly requested, output will be shown live  WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: `ProgressUnknown(desc::AbstractString; kwargs...)` is deprecated, use `ProgressUnknown(; desc = desc, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1  Minimizing 2 Time: 0:00:01 ( 0.62 s/it)  objective: 1790.1256369894638    Minimizing 57 Time: 0:00:01 (23.57 ms/it)  Minimizing 2 Time: 0:00:00 ( 0.17 s/it)  objective: 2380.5668557322774    Minimizing 8 Time: 0:00:00 (55.02 ms/it)  objective: 2416.3337867166483    Minimizing 15 Time: 0:00:00 (36.92 ms/it)  objective: 2419.604991481375    Minimizing 24 Time: 0:00:00 (27.79 ms/it)  objective: 2363.9391324922835    Minimizing 32 Time: 0:00:00 (24.40 ms/it)  objective: 2363.32932554389    Minimizing 40 Time: 0:00:00 (22.19 ms/it)  objective: 2362.3660401162674    Minimizing 48 Time: 0:00:00 (20.80 ms/it)  objective: 2361.8373743517136    Minimizing 57 Time: 0:00:01 (19.43 ms/it)  objective: 2361.8238551415197    Minimizing 66 Time: 0:00:01 (18.49 ms/it)  objective: 2361.8003479993026    Minimizing 74 Time: 0:00:01 (18.02 ms/it)  objective: 2361.7951674386854    Minimizing 82 Time: 0:00:01 (17.62 ms/it)  objective: 2361.778721167041    Minimizing 90 Time: 0:00:01 (17.32 ms/it)  objective: 2361.7701035555847    Minimizing 98 Time: 0:00:01 (17.05 ms/it)  objective: 2361.7538640813123    Minimizing 106 Time: 0:00:01 (16.78 ms/it)  objective: 2361.738766731727    Minimizing 114 Time: 0:00:01 (16.57 ms/it)  objective: 2361.7115950908305    Minimizing 122 Time: 0:00:02 (16.46 ms/it)  objective: 2361.580236945581    Minimizing 130 Time: 0:00:02 (16.31 ms/it)  objective: 2361.565053334751    Minimizing 138 Time: 0:00:02 (16.19 ms/it)  objective: 2361.5583525408206    Minimizing 146 Time: 0:00:02 (16.07 ms/it)  objective: 2361.5568396313583    Minimizing 153 Time: 0:00:02 (15.99 ms/it)  objective: 2361.5540753766827    Minimizing 161 Time: 0:00:02 (15.90 ms/it)  objective: 2361.549891695019    Minimizing 169 Time: 0:00:02 (15.81 ms/it)  objective: 2361.5480418031584    Minimizing 177 Time: 0:00:02 (15.74 ms/it)  objective: 2361.5469740028184    Minimizing 185 Time: 0:00:02 (15.64 ms/it)  objective: 2361.546756028915    Minimizing 193 Time: 0:00:03 (15.57 ms/it)  objective: 2361.54621629424    Minimizing 201 Time: 0:00:03 (15.51 ms/it)  objective: 2361.5458238055035    Minimizing 209 Time: 0:00:03 (15.46 ms/it)  objective: 2361.5458419856086    Minimizing 217 Time: 0:00:03 (15.42 ms/it)  objective: 2361.545778258247    Minimizing 225 Time: 0:00:03 (15.37 ms/it)  objective: 2361.5457744169175    Minimizing 233 Time: 0:00:03 (15.32 ms/it)  objective: 2361.5457762420556    Minimizing 241 Time: 0:00:03 (15.29 ms/it)  objective: 2361.5457695070486    Minimizing 249 Time: 0:00:03 (15.26 ms/it)  objective: 2361.5457692384452    Minimizing 250 Time: 0:00:03 (15.26 ms/it) 272647.9 ms ✓ MixedModels 1 dependency successfully precompiled in 277 seconds. 128 already precompiled. 1 dependency had output during precompilation: ┌ MixedModels │ [Output was shown above] └ WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: `ProgressUnknown(desc::AbstractString; kwargs...)` is deprecated, use `ProgressUnknown(; desc = desc, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1 Minimizing 2 Time: 0:00:01 ( 0.58 s/it) objective: 1790.1256369894638   Minimizing 57 Time: 0:00:01 (22.26 ms/it) Minimizing 2 Time: 0:00:00 ( 0.17 s/it) objective: 2380.5668557322774   Minimizing 9 Time: 0:00:00 (50.17 ms/it) objective: 2453.0374442859475   Minimizing 16 Time: 0:00:00 (35.12 ms/it) objective: 2421.2378094225714   Minimizing 23 Time: 0:00:00 (28.97 ms/it) objective: 2364.512832500585   Minimizing 31 Time: 0:00:00 (25.05 ms/it) objective: 2362.5581221709335   Minimizing 39 Time: 0:00:00 (22.71 ms/it) objective: 2362.368593015948   Minimizing 47 Time: 0:00:00 (21.24 ms/it) objective: 2361.8523649119434   Minimizing 55 Time: 0:00:01 (20.14 ms/it) objective: 2361.813549588116   Minimizing 63 Time: 0:00:01 (19.38 ms/it) objective: 2361.802726617136   Minimizing 71 Time: 0:00:01 (18.75 ms/it) objective: 2361.7965702542397   Minimizing 79 Time: 0:00:01 (18.29 ms/it) objective: 2361.792316737851   Minimizing 87 Time: 0:00:01 (17.87 ms/it) objective: 2361.799003998372   Minimizing 95 Time: 0:00:01 (17.52 ms/it) objective: 2361.7603685518898   Minimizing 103 Time: 0:00:01 (17.21 ms/it) objective: 2361.7493578163485   Minimizing 111 Time: 0:00:01 (16.95 ms/it) objective: 2361.742508648016   Minimizing 119 Time: 0:00:01 (16.75 ms/it) objective: 2361.59075148358   Minimizing 127 Time: 0:00:02 (16.55 ms/it) objective: 2361.5645521753836   Minimizing 135 Time: 0:00:02 (16.40 ms/it) objective: 2361.566210986916   Minimizing 143 Time: 0:00:02 (16.23 ms/it) objective: 2361.559092262648   Minimizing 151 Time: 0:00:02 (16.10 ms/it) objective: 2361.5538181439806   Minimizing 159 Time: 0:00:02 (16.00 ms/it) objective: 2361.5539547508774   Minimizing 167 Time: 0:00:02 (15.91 ms/it) objective: 2361.548059149546   Minimizing 175 Time: 0:00:02 (15.82 ms/it) objective: 2361.5471971226552   Minimizing 183 Time: 0:00:02 (15.73 ms/it) objective: 2361.546598094273   Minimizing 191 Time: 0:00:02 (15.65 ms/it) objective: 2361.5461723735402   Minimizing 199 Time: 0:00:03 (15.57 ms/it) objective: 2361.5458989718127   Minimizing 207 Time: 0:00:03 (15.49 ms/it) objective: 2361.545845328343   Minimizing 215 Time: 0:00:03 (15.43 ms/it) objective: 2361.5457820968127   Minimizing 223 Time: 0:00:03 (15.36 ms/it) objective: 2361.5457750797673   Minimizing 231 Time: 0:00:03 (15.30 ms/it) objective: 2361.545769856768   Minimizing 239 Time: 0:00:03 (15.24 ms/it) objective: 2361.5457695020586   Minimizing 247 Time: 0:00:03 (15.19 ms/it) objective: 2361.5457693224757   Minimizing 250 Time: 0:00:03 (15.17 ms/it) WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Method definition formula(StatsModels.TableRegressionModel{M, T} where T where M) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:4 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:4. WARNING: Method definition width(StatsModels.FunctionTerm{Forig, Fanon, Names} where Names where Fanon where Forig) in module StatsModels at /home/pkgeval/.julia/packages/StatsModels/fK0P3/src/terms.jl:128 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:11. WARNING: Method definition dof(FixedEffectModels.FixedEffectModel) in module FixedEffectModels at /home/pkgeval/.julia/packages/FixedEffectModels/xGOsh/src/FixedEffectModel.jl:58 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:14. ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/anova.jl:137 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/api.jl:102 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/6ycOV/src/lm.jl:185 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/6ycOV/src/lm.jl:185 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/anova.jl:137 Test Summary: | Pass Total Time LinearModel | 22 22 1m50.6s ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Poisson regression: Error During Test at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:147 Got exception outside of a @test BoundsError: attempt to access 0×0 Matrix{Float64} at index [1:1, 1:1] Stacktrace: [1] throw_boundserror(A::Matrix{Float64}, I::Tuple{UnitRange{Int64}, UnitRange{Int64}}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] view @ ./subarray.jl:214 [inlined] [4] delbeta!(p::GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}, r::Vector{Float64}, wt::Vector{Float64}) @ GLM ~/.julia/packages/GLM/6ycOV/src/linpred.jl:183 [5] _fit!(m::GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, verbose::Bool, maxiter::Int64, minstepfac::Float64, atol::Float64, rtol::Float64, start::Nothing) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:372 [6] #fit!#22 @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:462 [inlined] [7] fit! @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:429 [inlined] [8] fit(::Type{GeneralizedLinearModel}, X::Matrix{Float64}, y::Vector{Int64}, d::Poisson{Float64}, l::LogLink; dropcollinear::Bool, dofit::Bool, wts::Vector{Float64}, offset::Vector{Float64}, fitargs::@Kwargs{}) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:584 [9] (::MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogLink, Poisson{Float64}})(id::Int64) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:308 [10] iterate @ ./generator.jl:48 [inlined] [11] _collect(c::Vector{Int64}, itr::Base.Generator{Vector{Int64}, MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogLink, Poisson{Float64}}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:810 [12] collect_similar @ ./array.jl:732 [inlined] [13] map @ ./abstractarray.jl:3410 [inlined] [14] #nestedmodels#83 @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:304 [inlined] [15] nestedmodels(::Type{GeneralizedLinearModel}, formula::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::DataFrame, distr::Poisson{Float64}, link::LogLink; null::Bool, kwargs::@Kwargs{}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [16] nestedmodels @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [inlined] [17] nestedmodels(::Type{GeneralizedLinearModel}, formula::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::DataFrame, distr::Poisson{Float64}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [18] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:124 [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [20] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:148 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [22] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:148 [inlined] [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:485 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [27] _start() @ Base ./client.jl:558 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Logit regression: Error During Test at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:159 Got exception outside of a @test BoundsError: attempt to access 0×0 Matrix{Float64} at index [1:2, 1:2] Stacktrace: [1] throw_boundserror(A::Matrix{Float64}, I::Tuple{UnitRange{Int64}, UnitRange{Int64}}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] view @ ./subarray.jl:214 [inlined] [4] delbeta!(p::GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}, r::Vector{Float64}, wt::Vector{Float64}) @ GLM ~/.julia/packages/GLM/6ycOV/src/linpred.jl:183 [5] _fit!(m::GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, verbose::Bool, maxiter::Int64, minstepfac::Float64, atol::Float64, rtol::Float64, start::Nothing) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:372 [6] #fit!#22 @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:462 [inlined] [7] fit! @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:429 [inlined] [8] fit(::Type{GeneralizedLinearModel}, X::Matrix{Float64}, y::BitVector, d::Binomial{Float64}, l::LogitLink; dropcollinear::Bool, dofit::Bool, wts::Vector{Float64}, offset::Vector{Float64}, fitargs::@Kwargs{}) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:584 [9] (::MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogitLink, Binomial{Float64}})(id::Int64) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:308 [10] iterate @ ./generator.jl:48 [inlined] [11] _collect(c::Vector{Int64}, itr::Base.Generator{Vector{Int64}, MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogitLink, Binomial{Float64}}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:810 [12] collect_similar @ ./array.jl:732 [inlined] [13] map @ ./abstractarray.jl:3410 [inlined] [14] #nestedmodels#83 @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:304 [inlined] [15] nestedmodels(trm::StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:295 [16] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:124 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [18] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:160 [inlined] [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [20] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:162 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [25] _start() @ Base ./client.jl:558 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/api.jl:102 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Test Summary: | Pass Error Total Time GeneralizedLinearModel | 24 2 26 1m27.2s Gamma regression | 6 6 16.7s NegativeBinomial regression | 8 8 13.2s Poisson regression | 1 1 18.0s Logit regression | 1 1 12.8s Probit regression | 5 5 20.8s InverseGaussian regression | 5 5 5.6s ERROR: LoadError: Some tests did not pass: 24 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:123 Testing failed after 1045.6s ERROR: LoadError: Package MixedAnova errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1200.47s: package tests unexpectedly errored