Package evaluation of LaMEM on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T03:28:40.770 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.28s ################################################################################ # Installation # Installing LaMEM... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [2e889f3d] + LaMEM v0.4.5 Updating `~/.julia/environments/v1.12/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [7b0aa2c9] + BibTeX v0.1.0 [fa961155] + CEnum v0.5.0 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.3 [411431e0] + Extents v0.1.5 [c87230d0] + FFMPEG v0.4.2 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v0.10.38 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 ⌅ [e018b62d] + GeoParams v0.6.8 [0ef565a4] + Geodesy v1.1.0 ⌅ [5c1252a2] + GeometryBasics v0.4.11 ⌃ [3700c31b] + GeophysicalModelGenerator v0.7.4 [c27321d9] + Glob v1.3.1 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [7d512f48] + InternedStrings v0.7.0 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [b835a17e] + JpegTurbo v0.1.6 [49dc5b4e] + KernelDensitySJ v0.2.1 [2e889f3d] + LaMEM v0.4.5 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.1 [4345ca2d] + Loess v0.6.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [dbb5928d] + MappedArrays v0.4.2 ⌅ [7269a6da] + MeshIO v0.4.13 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.2 [b8a86587] + NearestNeighbors v0.4.21 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.16.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.0 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [dc215faf] + ReadVTK v0.2.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.6 [fdea26ae] + SIMD v3.7.1 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [45858cf5] + Sixel v0.1.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [cae243ae] + StackViews v0.1.1 ⌅ [aedffcd0] + Static v0.8.10 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 ⌅ [09ab397b] + StructArrays v0.6.21 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.3 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [967fb449] + Unidecode v1.1.0 [1986cc42] + Unitful v1.22.0 [4004b06d] + VTKBase v1.0.1 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [64499a7a] + WriteVTK v1.21.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.4+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.6.5+0 ⌅ [b22a6f82] + FFMPEG_jll v4.4.4+1 [a3f928ae] + Fontconfig_jll v2.15.0+0 [d7e528f0] + FreeType2_jll v2.13.3+1 [559328eb] + FriBidi_jll v1.0.16+0 [78b55507] + Gettext_jll v0.21.0+0 [59f7168a] + Giflib_jll v5.2.3+0 ⌃ [7746bdde] + Glib_jll v2.82.4+0 [3b182d85] + Graphite2_jll v1.3.14+1 [2e76f6c2] + HarfBuzz_jll v8.5.0+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [905a6f67] + Imath_jll v3.1.11+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [c1c5ebd0] + LAME_jll v3.100.2+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.7+0 [dd4b983a] + LZO_jll v2.10.3+0 [15d6fa20] + LaMEM_jll v2.1.4+0 ⌅ [e9f186c6] + Libffi_jll v3.2.2+2 [d4300ac3] + Libgcrypt_jll v1.11.0+0 [7e76a0d4] + Libglvnd_jll v1.7.0+0 [7add5ba3] + Libgpg_error_jll v1.51.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.40.3+0 [89763e89] + Libtiff_jll v4.7.1+0 [38a345b3] + Libuuid_jll v2.40.3+0 ⌅ [7cb0a576] + MPICH_jll v4.1.2+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e7412a2a] + Ogg_jll v1.3.5+1 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [fe0851c0] + OpenMPI_jll v5.0.7+1 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.3.3+0 ⌅ [8fa3689e] + PETSc_jll v3.19.6+0 [30392449] + Pixman_jll v0.44.2+0 [aabda75e] + SCALAPACK32_jll v2.2.1+1 [02c8fc9c] + XML2_jll v2.13.6+1 [aed1982a] + XSLT_jll v1.1.42+0 [ffd25f8a] + XZ_jll v5.6.4+1 [4f6342f7] + Xorg_libX11_jll v1.8.6+3 [0c0b7dd1] + Xorg_libXau_jll v1.0.12+0 [a3789734] + Xorg_libXdmcp_jll v1.1.5+0 [1082639a] + Xorg_libXext_jll v1.3.6+3 [ea2f1a96] + Xorg_libXrender_jll v0.9.11+1 [14d82f49] + Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.0+3 [c5fb5394] + Xorg_xtrans_jll v1.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [a4ae2306] + libaom_jll v3.11.0+0 [0ac62f75] + libass_jll v0.15.2+0 [f638f0a6] + libfdk_aac_jll v2.0.3+0 [b53b4c65] + libpng_jll v1.6.47+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.7+2 [c5f90fcd] + libwebp_jll v1.5.0+0 ⌅ [1270edf5] + x264_jll v2021.5.5+0 ⌅ [dfaa095f] + x265_jll v3.5.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [efcefdf7] + PCRE2_jll v10.44.0+0 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.73s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1581.78s ################################################################################ # Testing # Testing LaMEM Status `/tmp/jl_MPNmQJ/Project.toml` ⌃ [13f3f980] CairoMakie v0.12.18 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.3 ⌅ [e018b62d] GeoParams v0.6.8 ⌃ [3700c31b] GeophysicalModelGenerator v0.7.4 [c27321d9] Glob v1.3.1 [a98d9a8b] Interpolations v0.15.1 [2e889f3d] LaMEM v0.4.5 [9c8b4983] LightXML v0.9.1 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [91a5bcdd] Plots v1.40.11 [dc215faf] ReadVTK v0.2.4 [10745b16] Statistics v1.11.1 [64499a7a] WriteVTK v1.21.1 [15d6fa20] LaMEM_jll v2.1.4+0 ⌅ [7cb0a576] MPICH_jll v4.1.2+1 [8dfed614] Test v1.11.0 Status `/tmp/jl_MPNmQJ/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [7b0aa2c9] BibTeX v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [159f3aea] Cairo v1.1.1 ⌃ [13f3f980] CairoMakie v0.12.18 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [4e289a0a] EnumX v1.0.4 [429591f6] ExactPredicates v2.2.8 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.5 [c87230d0] FFMPEG v0.4.2 [7a1cc6ca] FFTW v1.8.1 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v0.10.38 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.6 [28b8d3ca] GR v0.73.13 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 ⌅ [e018b62d] GeoParams v0.6.8 [0ef565a4] Geodesy v1.1.0 ⌅ [5c1252a2] GeometryBasics v0.4.11 ⌃ [3700c31b] GeophysicalModelGenerator v0.7.4 [c27321d9] Glob v1.3.1 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [7d512f48] InternedStrings v0.7.0 [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v0.22.25 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [1019f520] JLFzf v0.1.10 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.9 [49dc5b4e] KernelDensitySJ v0.2.1 [2e889f3d] LaMEM v0.4.5 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.6 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.1 [4345ca2d] Loess v0.6.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 ⌅ [ee78f7c6] Makie v0.21.18 ⌅ [20f20a25] MakieCore v0.8.12 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [2., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0313491 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress tensor @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [8, 8, 8] Local coarse grid [nx,ny,nz] : [8, 8, 8] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.656395025301e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 5 1 SNES Function norm 9.765816215863e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.636914 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.291310889682e-05 |Div|_2 = 2.886140529488e-04 Momentum: |mRes|_2 = 9.761550506474e-03 -------------------------------------------------------------------------- Saving output ... done (0.00389957 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 2.685113961409e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 15 1 SNES Function norm 4.489500644001e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.718235 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.406409583179e-06 |Div|_2 = 5.437966746000e-06 Momentum: |mRes|_2 = 4.489497350596e-03 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.1230e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00335333 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 1.57343 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 3 Time step : 1. [Myr] Minimum time step : 1e-05 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [2., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of velocity boxes : 1 Velocity box # : 0 Box center : 0., 0., 0. [km] Box width : 1., 1., 1. [km] X-velocity : 1. [cm/yr] Top boundary temperature : 0. [C] Bottom boundary temperature : 20. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0308801 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [8, 8, 8] Local coarse grid [nx,ny,nz] : [8, 8, 8] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.647420796124e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 7.297937424597e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.604843 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.461331555372e-06 |Div|_2 = 2.127815511859e-04 Momentum: |mRes|_2 = 7.294834793524e-03 -------------------------------------------------------------------------- Saving output ... done (0.00314107 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.382901817483e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 10 1 SNES Function norm 3.188552971360e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.797265 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.448585401899e-05 |Div|_2 = 1.340409029960e-03 Momentum: |mRes|_2 = 3.185734308993e-02 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 4692 markers and merged 24 markers in 1.5361e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00278114 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.01250000 [Myr] Tentative time step : 0.01250000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.188552971358e-02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 11 1 SNES Function norm 1.891353888714e-07 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.638656 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.163910967605e-09 |Div|_2 = 1.007415909660e-08 Momentum: |mRes|_2 = 1.888669019231e-07 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 8386 markers and merged 136 markers in 2.4927e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00282234 sec) -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.02500000 [Myr] Tentative time step : 0.01250000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.891353882404e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 13 1 SNES Function norm 3.806690487543e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.649009 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.732544348338e-15 |Div|_2 = 6.229370514023e-14 Momentum: |mRes|_2 = 3.806180757958e-12 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 9921 markers and merged 252 markers in 2.8984e-02 s -------------------------------------------------------------------------- Saving output ... done (0.0027594 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 3.19345 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 100000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 30 Time step : 0.01 [Myr] Minimum time step : 1e-05 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 5 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [64, 1, 64] Number of cells : 4096 Number of faces : 16512 Maximum cell aspect ratio : 1.28000 Lower coordinate bounds [bx, by, bz] : [-500., -10., -1000.] Upper coordinate bounds [ex, ey, ez] : [500., 10., 50.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- Air (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+22 [Pa*s] Bd = 5e-23 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1e+06 [J/kg/K] k = 100. [W/m/k] Phase ID : 1 -- OCrust (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+24 [Pa*s] Bd = 5e-25 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 2 -- Omantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 3 -- Umantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 4 -- Plume (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 5 -- Lmantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+21 [Pa*s] Bd = 5e-22 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 6 -- Plume2 (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 7 -- Umantle2 (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] -------------------------------------------------------------------------- Phase Transition laws: -------------------------------------------------------------------------- Phase Transition [0] : Constant Parameter : T Transition Value : 1200.000 Phase Above : 3 Phase Below : 2 Direction : BothWays Phase Transition [1] : Constant Parameter : Depth Transition Value : -400.000 Phase Above : 6 Phase Below : 4 Direction : BelowToAbove Reset Parameter : APS Phase Transition [2] : Clapeyron Transition law : Mantle_Transition_660km # Equations : 1 [ P = P0 + gamma*(T-T0) ] eq[0] : gamma = -2.50e+00 [MPa/C], P0 = 2.30e+10 [Pa], T0 = 1667.0 [deg C] Phase Above : 5 Phase Below : 3 Direction : BothWays Phase Transition [3] : Box Box Bounds : [200.0; 400.0; -100.0; 100.0; -1000.0; -500.0] [km] Box Vicinity : Use all particles to check inside/outside Linear Temp; bot T : 1300.0 [C] Linear Temp; top T : 20.0 [C] Phase Outside : 3 Phase Inside : 7 Direction : BothWays Reset Parameter : APS Adjusting density values due to phase transitions: -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 1 0 Open top boundary @ Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0315834 sec) -------------------------------------------------------------------------- Output parameters: Output file name : Plume_PhaseTransitions_new Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Initializing pressure with lithostatic pressure ... done (0.0017722 sec) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 1.985087139977e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.594719909526e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.219498 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.736320446684e-03 |Div|_2 = 6.379041312826e-02 Momentum: |mRes|_2 = 1.672770938997e-02 -------------------------------------------------------------------------- Saving output ... done (0.00407791 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.01000000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0227881 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.903947944260e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.024649811614e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.125861 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.935922950757e-06 |Div|_2 = 6.296964037381e-05 Momentum: |mRes|_2 = 6.024320723283e-03 -------------------------------------------------------------------------- Actual time step : 0.01100 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 441 markers and merged 0 markers in 1.1669e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00553537 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.01100000 [Myr] Tentative time step : 0.01100000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0251798 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.034506122548e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.042794808280e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.135716 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.100791055896e-06 |Div|_2 = 2.663022244943e-05 Momentum: |mRes|_2 = 3.042678273585e-03 -------------------------------------------------------------------------- Actual time step : 0.01210 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1089 markers and merged 0 markers in 1.2200e-02 s -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.02310000 [Myr] Tentative time step : 0.01210000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.024834 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.318612913611e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.512638742054e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.135464 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.382602357380e-06 |Div|_2 = 8.871198692501e-06 Momentum: |mRes|_2 = 4.512630022295e-03 -------------------------------------------------------------------------- Actual time step : 0.01271 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1648 markers and merged 0 markers in 1.3404e-02 s -------------------------------------------------------------------------- ================================= STEP 4 ================================= -------------------------------------------------------------------------- Current time : 0.03580813 [Myr] Tentative time step : 0.01270813 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0264135 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.935573222169e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.347072227143e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.134868 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.247047888856e-06 |Div|_2 = 7.447201618764e-06 Momentum: |mRes|_2 = 2.347072108994e-02 -------------------------------------------------------------------------- Actual time step : 0.01317 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2283 markers and merged 0 markers in 1.5090e-02 s -------------------------------------------------------------------------- ================================= STEP 5 ================================= -------------------------------------------------------------------------- Current time : 0.04898011 [Myr] Tentative time step : 0.01317198 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0260127 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.589238590905e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.013070382147e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.136371 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.805947853928e-06 |Div|_2 = 3.560205426322e-06 Momentum: |mRes|_2 = 1.013070319589e-02 -------------------------------------------------------------------------- Actual time step : 0.01348 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2457 markers and merged 3 markers in 1.5373e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00377326 sec) -------------------------------------------------------------------------- ================================= STEP 6 ================================= -------------------------------------------------------------------------- Current time : 0.06246502 [Myr] Tentative time step : 0.01348490 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0247271 sec) -------------------------------------------------------------------------- 0 SNES Function norm 7.105193382543e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.154888385840e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.12743 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.625893629040e-06 |Div|_2 = 7.876091187835e-06 Momentum: |mRes|_2 = 1.154888117274e-02 -------------------------------------------------------------------------- Actual time step : 0.01377 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2718 markers and merged 21 markers in 1.6505e-02 s -------------------------------------------------------------------------- ================================= STEP 7 ================================= -------------------------------------------------------------------------- Current time : 0.07623411 [Myr] Tentative time step : 0.01376910 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0287705 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.042373659728e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.510094877904e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.134123 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.794971457089e-06 |Div|_2 = 6.312594508142e-06 Momentum: |mRes|_2 = 1.510094745962e-02 -------------------------------------------------------------------------- Actual time step : 0.01399 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3179 markers and merged 33 markers in 1.7102e-02 s -------------------------------------------------------------------------- ================================= STEP 8 ================================= -------------------------------------------------------------------------- Current time : 0.09022767 [Myr] Tentative time step : 0.01399356 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0264625 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.871444769587e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.658430341970e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131752 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.403254490275e-06 |Div|_2 = 5.498127413823e-06 Momentum: |mRes|_2 = 1.658421228085e-03 -------------------------------------------------------------------------- Actual time step : 0.01398 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3119 markers and merged 57 markers in 1.8312e-02 s -------------------------------------------------------------------------- ================================= STEP 9 ================================= -------------------------------------------------------------------------- Current time : 0.10421032 [Myr] Tentative time step : 0.01398265 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0278839 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.449583974129e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.322063249770e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.128437 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.449661887811e-06 |Div|_2 = 5.875773877495e-06 Momentum: |mRes|_2 = 5.322060006223e-03 -------------------------------------------------------------------------- Actual time step : 0.01428 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3466 markers and merged 90 markers in 1.9421e-02 s -------------------------------------------------------------------------- ================================ STEP 10 ================================= -------------------------------------------------------------------------- Current time : 0.11849403 [Myr] Tentative time step : 0.01428371 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0313236 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.706865316454e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.788517436845e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138016 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.971033394610e-06 |Div|_2 = 3.839433186097e-06 Momentum: |mRes|_2 = 2.788514793639e-03 -------------------------------------------------------------------------- Actual time step : 0.01439 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3661 markers and merged 117 markers in 2.1053e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00374177 sec) -------------------------------------------------------------------------- ================================ STEP 11 ================================= -------------------------------------------------------------------------- Current time : 0.13288211 [Myr] Tentative time step : 0.01438807 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.029362 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.991485040991e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.694136165734e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.134796 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.383957079883e-06 |Div|_2 = 5.825431414762e-06 Momentum: |mRes|_2 = 8.694134214094e-03 -------------------------------------------------------------------------- Actual time step : 0.01458 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3219 markers and merged 150 markers in 2.2745e-02 s -------------------------------------------------------------------------- ================================ STEP 12 ================================= -------------------------------------------------------------------------- Current time : 0.14746103 [Myr] Tentative time step : 0.01457892 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0302627 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.473879258981e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.560793671473e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.13997 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.258375541324e-06 |Div|_2 = 2.992576486504e-06 Momentum: |mRes|_2 = 3.560792413957e-03 -------------------------------------------------------------------------- Actual time step : 0.01463 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3311 markers and merged 161 markers in 2.2019e-02 s -------------------------------------------------------------------------- ================================ STEP 13 ================================= -------------------------------------------------------------------------- Current time : 0.16209081 [Myr] Tentative time step : 0.01462979 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0303587 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.275685042272e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.103768241593e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137399 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.613569589706e-06 |Div|_2 = 3.362504229368e-06 Momentum: |mRes|_2 = 5.103767133937e-03 -------------------------------------------------------------------------- Actual time step : 0.01468 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3513 markers and merged 249 markers in 2.4595e-02 s -------------------------------------------------------------------------- ================================ STEP 14 ================================= -------------------------------------------------------------------------- Current time : 0.17677097 [Myr] Tentative time step : 0.01468015 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0358084 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.350290833178e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.726032134112e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137377 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.747924524954e-06 |Div|_2 = 6.606745373525e-06 Momentum: |mRes|_2 = 1.726019489723e-03 -------------------------------------------------------------------------- Actual time step : 0.01480 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3237 markers and merged 241 markers in 2.4190e-02 s -------------------------------------------------------------------------- ================================ STEP 15 ================================= -------------------------------------------------------------------------- Current time : 0.19157476 [Myr] Tentative time step : 0.01480379 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0363214 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.674533097998e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.036490753468e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139323 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.276829055403e-06 |Div|_2 = 5.026127715309e-06 Momentum: |mRes|_2 = 3.036486593736e-03 -------------------------------------------------------------------------- Actual time step : 0.01474 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3166 markers and merged 301 markers in 2.4877e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00375908 sec) -------------------------------------------------------------------------- ================================ STEP 16 ================================= -------------------------------------------------------------------------- Current time : 0.20631027 [Myr] Tentative time step : 0.01473551 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0371063 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.214195749760e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.255579919968e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.141427 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.215428179386e-07 |Div|_2 = 1.542132189085e-06 Momentum: |mRes|_2 = 1.255578972927e-03 -------------------------------------------------------------------------- Actual time step : 0.01494 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2829 markers and merged 348 markers in 2.6887e-02 s -------------------------------------------------------------------------- ================================ STEP 17 ================================= -------------------------------------------------------------------------- Current time : 0.22125036 [Myr] Tentative time step : 0.01494009 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0353258 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.415360965464e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.397087471237e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.130551 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.282432859018e-06 |Div|_2 = 2.980539196763e-06 Momentum: |mRes|_2 = 1.397084291900e-03 -------------------------------------------------------------------------- Actual time step : 0.01505 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3076 markers and merged 366 markers in 2.8487e-02 s -------------------------------------------------------------------------- ================================ STEP 18 ================================= -------------------------------------------------------------------------- Current time : 0.23629778 [Myr] Tentative time step : 0.01504742 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0362885 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.271567359873e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.069485309642e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131876 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.690801147980e-06 |Div|_2 = 4.153467007522e-06 Momentum: |mRes|_2 = 3.069482499514e-03 -------------------------------------------------------------------------- Actual time step : 0.01518 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2831 markers and merged 351 markers in 2.7258e-02 s -------------------------------------------------------------------------- ================================ STEP 19 ================================= -------------------------------------------------------------------------- Current time : 0.25147556 [Myr] Tentative time step : 0.01517778 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0350965 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.407677792888e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.478870555625e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.135941 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.034064185168e-06 |Div|_2 = 1.427767384948e-06 Momentum: |mRes|_2 = 3.478841256917e-04 -------------------------------------------------------------------------- Actual time step : 0.01517 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2958 markers and merged 373 markers in 2.8349e-02 s -------------------------------------------------------------------------- ================================ STEP 20 ================================= -------------------------------------------------------------------------- Current time : 0.26665036 [Myr] Tentative time step : 0.01517480 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.033129 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.454633636616e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.597346615330e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.127098 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.757287793226e-06 |Div|_2 = 4.633531387496e-06 Momentum: |mRes|_2 = 4.597344280328e-03 -------------------------------------------------------------------------- Actual time step : 0.01529 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2615 markers and merged 348 markers in 2.9741e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00378773 sec) -------------------------------------------------------------------------- ================================ STEP 21 ================================= -------------------------------------------------------------------------- Current time : 0.28194393 [Myr] Tentative time step : 0.01529357 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0338649 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.662243615071e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.457572792318e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.127916 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.549740517276e-06 |Div|_2 = 2.356606806332e-06 Momentum: |mRes|_2 = 1.457570887233e-03 -------------------------------------------------------------------------- Actual time step : 0.01530 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2223 markers and merged 464 markers in 2.8382e-02 s -------------------------------------------------------------------------- ================================ STEP 22 ================================= -------------------------------------------------------------------------- Current time : 0.29723979 [Myr] Tentative time step : 0.01529587 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0347678 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.666098628745e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.181579776420e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.132245 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.105071822966e-07 |Div|_2 = 4.345251602430e-07 Momentum: |mRes|_2 = 2.181575448998e-04 -------------------------------------------------------------------------- Actual time step : 0.01536 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2358 markers and merged 388 markers in 3.2654e-02 s -------------------------------------------------------------------------- ================================ STEP 23 ================================= -------------------------------------------------------------------------- Current time : 0.31259987 [Myr] Tentative time step : 0.01536008 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0387435 sec) -------------------------------------------------------------------------- 0 SNES Function norm 6.520633752479e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.585323132561e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138948 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.074607750498e-07 |Div|_2 = 1.241583485338e-06 Momentum: |mRes|_2 = 3.585301634720e-04 -------------------------------------------------------------------------- Actual time step : 0.01533 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2052 markers and merged 489 markers in 2.9859e-02 s -------------------------------------------------------------------------- ================================ STEP 24 ================================= -------------------------------------------------------------------------- Current time : 0.32792814 [Myr] Tentative time step : 0.01532827 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0385427 sec) -------------------------------------------------------------------------- 0 SNES Function norm 7.544791942376e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.645518857154e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.141818 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.963381580539e-06 |Div|_2 = 3.578799441957e-06 Momentum: |mRes|_2 = 6.645422492230e-04 -------------------------------------------------------------------------- Actual time step : 0.01533 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1961 markers and merged 581 markers in 3.0979e-02 s -------------------------------------------------------------------------- ================================ STEP 25 ================================= -------------------------------------------------------------------------- Current time : 0.34326050 [Myr] Tentative time step : 0.01533236 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0362761 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.428135768392e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.940813617477e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139371 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.323266839596e-06 |Div|_2 = 2.195414288975e-06 Momentum: |mRes|_2 = 1.940812375769e-03 -------------------------------------------------------------------------- Actual time step : 0.01535 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2019 markers and merged 548 markers in 3.0637e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00377292 sec) -------------------------------------------------------------------------- ================================ STEP 26 ================================= -------------------------------------------------------------------------- Current time : 0.35861463 [Myr] Tentative time step : 0.01535414 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0418953 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.789866730496e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.615523047067e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.134738 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.855295772624e-06 |Div|_2 = 3.281914795005e-06 Momentum: |mRes|_2 = 1.615519713479e-03 -------------------------------------------------------------------------- Actual time step : 0.01538 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1918 markers and merged 626 markers in 3.1264e-02 s -------------------------------------------------------------------------- ================================ STEP 27 ================================= -------------------------------------------------------------------------- Current time : 0.37399938 [Myr] Tentative time step : 0.01538475 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0446337 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.889560968213e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.610205639529e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.13876 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.735301883940e-07 |Div|_2 = 1.052907877585e-06 Momentum: |mRes|_2 = 1.610205295283e-03 -------------------------------------------------------------------------- Actual time step : 0.01541 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1756 markers and merged 594 markers in 3.1412e-02 s -------------------------------------------------------------------------- ================================ STEP 28 ================================= -------------------------------------------------------------------------- Current time : 0.38940579 [Myr] Tentative time step : 0.01540641 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0409118 sec) -------------------------------------------------------------------------- 0 SNES Function norm 6.172228468350e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.191147607294e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139269 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.224928623258e-06 |Div|_2 = 5.311699400284e-06 Momentum: |mRes|_2 = 5.190875847645e-04 -------------------------------------------------------------------------- Actual time step : 0.01550 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1699 markers and merged 628 markers in 3.2462e-02 s -------------------------------------------------------------------------- ================================ STEP 29 ================================= -------------------------------------------------------------------------- Current time : 0.40491046 [Myr] Tentative time step : 0.01550467 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.038405 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.295216675739e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.561757840034e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.1342 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.107123301842e-06 |Div|_2 = 4.128857669323e-06 Momentum: |mRes|_2 = 1.561752382243e-03 -------------------------------------------------------------------------- Actual time step : 0.01561 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1661 markers and merged 673 markers in 3.2395e-02 s -------------------------------------------------------------------------- ================================ STEP 30 ================================= -------------------------------------------------------------------------- Current time : 0.42052352 [Myr] Tentative time step : 0.01561306 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0382017 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.803452452713e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.966698890739e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.132628 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.558964615428e-06 |Div|_2 = 3.788307440217e-06 Momentum: |mRes|_2 = 1.966695242167e-03 -------------------------------------------------------------------------- Actual time step : 0.01574 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1519 markers and merged 607 markers in 3.2057e-02 s -------------------------------------------------------------------------- Saving output ... done (0.0037164 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 10.2726 (sec) -------------------------------------------------------------------------- pwd() = "/home/pkgeval/.julia/packages/LaMEM/gnosH/test" readdir() = ["CreateMarkers_Subduction_Linear_FreeSlip_parallel.jl", "Rhyolite.in", "input_files", "markers", "mesh_refinement_test.jl", "read_logfile.jl", "read_timestep.jl", "runLaMEM.jl", "run_lamem_save_grid_test.jl", "runtests.jl", "test_GeoParams_integration.jl", "test_compression.jl", "test_erosion.jl", "test_examples.jl", "test_julia_setup_phase_diagrams.jl", "test_julia_setups.jl"] Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 100000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 4 Time step : 0.04 [Myr] Minimum time step : 0.004 [Myr] Maximum time step : 0.2 [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 6.25000 Lower coordinate bounds [bx, by, bz] : [-100., -1., -100.] Upper coordinate bounds [ex, ey, ez] : [100., 1., 0.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- heter - Employing phase diagram: /home/pkgeval/.julia/packages/LaMEM/gnosH/test/Rhyolite (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix - Employing phase diagram: /home/pkgeval/.julia/packages/LaMEM/gnosH/test/Rhyolite (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 989.583 [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00203238 sec) -------------------------------------------------------------------------- Phase Diagrams: Diagrams employed for phases : 0: P range=[0.2-20.2] kbar, T range = [386.4-2086.4] K 1: -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ Melt fraction @ Fluid density @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.934530286730e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.581262562749e+02 1 PICARD ||F||/||F0||=4.018936e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.117627025004e+01 2 MMFD ||F||/||F0||=2.840560e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 3 SNES Function norm 1.432330149671e-01 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 3 SNES solution time : 0.0137283 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.002321873040e-09 |Div|_2 = 5.644441176775e-08 Momentum: |mRes|_2 = 1.432330149671e-01 -------------------------------------------------------------------------- Saving output ... done (0.000924042 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.04000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.050235816760e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.039676666126e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.00593104 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.069414583551e-18 |Div|_2 = 3.162302608719e-17 Momentum: |mRes|_2 = 3.039676666126e-03 -------------------------------------------------------------------------- Actual time step : 0.04400 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.4947e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00134394 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.04400000 [Myr] Tentative time step : 0.04400000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.040264438959e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 6.434728602950e-05 1 PICARD ||F||/||F0||=2.116503e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.391731242115e-06 2 MMFD ||F||/||F0||=4.577665e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 3 SNES Function norm 3.775960634440e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 3 SNES solution time : 0.0193102 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.030373462211e-20 |Div|_2 = 2.243793518119e-19 Momentum: |mRes|_2 = 3.775960634440e-12 -------------------------------------------------------------------------- Actual time step : 0.04840 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.5329e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000885472 sec) -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.09240000 [Myr] Tentative time step : 0.04840000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 2.883181848925e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 7.210941128243e-07 1 PICARD ||F||/||F0||=2.501036e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.472232176353e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0103461 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.343431206158e-15 |Div|_2 = 7.266627062028e-15 Momentum: |mRes|_2 = 1.472232176353e-08 -------------------------------------------------------------------------- Actual time step : 0.05324 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.5943e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000954101 sec) -------------------------------------------------------------------------- ================================= STEP 4 ================================= -------------------------------------------------------------------------- Current time : 0.14564000 [Myr] Tentative time step : 0.05324000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.170864950966e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 7.927997956283e-07 1 PICARD ||F||/||F0||=2.500264e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.618712375651e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0106453 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.477117569190e-15 |Div|_2 = 7.988983672080e-15 Momentum: |mRes|_2 = 1.618712375651e-08 -------------------------------------------------------------------------- Actual time step : 0.05856 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.6840e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000865992 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.11778 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -0.09375, -1.] Upper coordinate bounds [ex, ey, ez] : [2., 0.09375, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.000245278 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 9.118551990311e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.116028797339e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00784244 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.174184490476e-18 |Div|_2 = 5.984135402956e-18 Momentum: |mRes|_2 = 1.116028797323e-12 -------------------------------------------------------------------------- Saving output ... done (0.00124391 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.116028797339e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.979851535660e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00454578 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.877881017396e-30 |Div|_2 = 3.192494526470e-29 Momentum: |mRes|_2 = 4.979851535660e-14 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.5467e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000878781 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0385068 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -0.09375, -1.] Upper coordinate bounds [ex, ey, ez] : [2., 0.09375, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.000629504 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 9.118551990311e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.116028797339e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0079224 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.174184490476e-18 |Div|_2 = 5.984135402956e-18 Momentum: |mRes|_2 = 1.116028797323e-12 -------------------------------------------------------------------------- Saving output ... done (0.00112059 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.116028797339e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.979851535660e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00431764 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.877881017396e-30 |Div|_2 = 3.192494526470e-29 Momentum: |mRes|_2 = 4.979851535660e-14 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.5427e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00105034 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0375861 (sec) -------------------------------------------------------------------------- cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/gnosH/test/input_files/FallingBlock_Multigrid.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Adding PETSc option: -crs_pc_type bjacobi Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 1 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [32, 32, 32] Number of cells : 32768 Number of faces : 101376 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] Phase ID : 2 (dens) : rho = 2. [ ] (diff) : eta = 1000. [ ] Bd = 0.0005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.0225066 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_multigrid Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Deviatoric stress second invariant @ Deviatoric strain rate tensor @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [4, 4, 4] Local coarse grid [nx,ny,nz] : [4, 4, 4] Number of multigrid levels : 4 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : bjacobi -------------------------------------------------------------------------- Saving output ... done (0.957476 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.832203177398e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.121468833494e+01 1 KSP Residual norm 2.007312746141e+01 2 KSP Residual norm 1.436721786209e+01 3 KSP Residual norm 7.031413261028e+00 4 KSP Residual norm 2.361866279194e+00 5 KSP Residual norm 1.011785314253e+00 6 KSP Residual norm 4.700182839567e-01 7 KSP Residual norm 3.431392417306e-01 8 KSP Residual norm 1.759675422301e-01 9 KSP Residual norm 1.053716068647e-01 10 KSP Residual norm 9.342460424411e-02 11 KSP Residual norm 7.749792924243e-02 12 KSP Residual norm 5.192767141878e-02 13 KSP Residual norm 3.842800827033e-02 14 KSP Residual norm 1.589386132911e-02 15 KSP Residual norm 8.851034636242e-03 16 KSP Residual norm 4.554700539865e-03 17 KSP Residual norm 2.632601842348e-03 18 KSP Residual norm 1.311043982030e-03 19 KSP Residual norm 6.462411319589e-04 20 KSP Residual norm 3.583024905386e-04 21 KSP Residual norm 1.510300556884e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 21 1 SNES Function norm 1.371165827605e-02 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 7.09699 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.351162529297e-05 |Div|_2 = 1.404433474462e-04 Momentum: |mRes|_2 = 1.371093900305e-02 -------------------------------------------------------------------------- Actual time step : 6.73129 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 1.1674e-03 s Marker control [0]: (AVD XZED) injected 7 markers and deleted 0 markers in 1.3308e-03 s Marker control [0]: (AVD XYED) injected 10 markers and deleted 0 markers in 1.7417e-03 s -------------------------------------------------------------------------- Saving output ... done (1.12433 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 11.1833 (sec) -------------------------------------------------------------------------- cores_compute = 4 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7fff77951ebc, argv=0x7fff77951eb0, required=1, provided=0x7fff77951a7c) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-uHB6KZin (errno 2) Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffdfacd721c, argv=0x7ffdfacd7210, required=1, provided=0x7ffdfacd6ddc) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-uHB6KZin (errno 2) Falling Block test on 4 cores failed cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/gnosH/test/input_files/FallingBlock_DirectSolver.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 2 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1000 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.0031858 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_direct Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+03 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Saving output ... done (0.111143 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 7.310266752999e+01 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.133540043787e+01 1 KSP Residual norm 1.859427686320e-02 2 KSP Residual norm 2.899733401244e-05 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.649877042896e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.51403 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.056315829386e-06 |Div|_2 = 3.650679845667e-05 Momentum: |mRes|_2 = 1.608980926960e-04 -------------------------------------------------------------------------- Actual time step : 7.69851 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD CELL) injected 1 markers and deleted 0 markers in 2.9537e-04 s Marker control [0]: (AVD YZED) injected 6 markers and deleted 0 markers in 9.9157e-04 s Marker control [0]: (AVD XZED) injected 8 markers and deleted 0 markers in 1.5510e-03 s Marker control [0]: (AVD XYED) injected 2 markers and deleted 0 markers in 4.6233e-04 s -------------------------------------------------------------------------- Saving output ... done (0.140122 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 7.69851107 [ ] Tentative time step : 7.69851107 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.307661178463e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 1.189285812726e+00 1 KSP Residual norm 1.071718651319e-03 2 KSP Residual norm 2.121756434235e-06 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.789132168326e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.3053 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.594135843254e-08 |Div|_2 = 7.340971818893e-07 Momentum: |mRes|_2 = 5.789127513924e-04 -------------------------------------------------------------------------- Actual time step : 8.25319 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 9.1488e-04 s Marker control [0]: (AVD XZED) injected 4 markers and deleted 0 markers in 7.2899e-04 s Marker control [0]: (AVD XYED) injected 7 markers and deleted 0 markers in 1.2280e-03 s -------------------------------------------------------------------------- Saving output ... done (0.12551 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 5.60728 (sec) -------------------------------------------------------------------------- cores_compute = 2 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffc4514209c, argv=0x7ffc45142090, required=1, provided=0x7ffc45141c5c) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-uHB6KZin (errno 2) run LaMEM: Error During Test at /home/pkgeval/.julia/packages/LaMEM/gnosH/test/runLaMEM.jl:4 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin/mpiexec -n 2 /home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/bin/LaMEM -ParamFile /home/pkgeval/.julia/packages/LaMEM/gnosH/test/input_files/FallingBlock_DirectSolver.dat '-nstep_max 5'`,["PYTHON=", "PATH=/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "ZES_ENABLE_SYSMAN=1", "GRDIR=/home/pkgeval/.julia/artifacts/e9bf10b107c2a84cd0b92d58ca077c18d9b56c5a", "DISPLAY=:1", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/e83428c736a7117825caecd465ca39de72e835b8/lib:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/home/pkgeval/.julia/artifacts/0a6a41be79ef85f32aa7d8529d4aebf9ef8ab030/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64_deb/lib:/home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib:/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "OMP_NUM_THREADS=1", "CI=true", "R_HOME=*", "FONTCONFIG_PATH=/home/pkgeval/.julia/artifacts/bd752d7807f5f10e2dce3d2b2b683589fa03d31a/etc/fonts", "LANG=C.UTF-8", "VECLIB_MAXIMUM_THREADS=1", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "FONTCONFIG_FILE=/home/pkgeval/.julia/artifacts/bd752d7807f5f10e2dce3d2b2b683589fa03d31a/etc/fonts/fonts.conf", "JULIA_LOAD_PATH=/tmp/jl_XKrnI0/Project.toml:/home/pkgeval/.julia/environments/v1.12/Project.toml:/opt/julia/share/julia/stdlib/v1.12", "UCX_MEMTYPE_CACHE=no", "PKGEVAL=true", "UCX_ERROR_SIGNALS=SIGILL,SIGBUS,SIGFPE", "LIBDECOR_PLUGIN_DIR=/home/pkgeval/.julia/artifacts/38e215c51e5c0f77bc7a8813ba4586632a8fc750/lib/libdecor/plugins-1", "JULIA_PKG_PRECOMPILE_AUTO=0", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "XKB_CONFIG_ROOT=/home/pkgeval/.julia/artifacts/f8b49c7c45b400e3f5c4002d19645d4b88712c0c/share/X11/xkb"]), ProcessExited(15)) [15] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run @ ./process.jl:510 [inlined] [4] run_lamem(ParamFile::String, cores::Int64, args::String; wait::Bool, deactivate_multithreads::Bool) @ LaMEM.Run ~/.julia/packages/LaMEM/gnosH/src/run_lamem.jl:79 [5] run_lamem(ParamFile::String, cores::Int64, args::String) @ LaMEM.Run ~/.julia/packages/LaMEM/gnosH/src/run_lamem.jl:50 [6] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/runLaMEM.jl:7 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/runLaMEM.jl:36 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [10] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:7 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:485 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [17] _start() @ Base ./client.jl:558 read LaMEM output: Error During Test at /home/pkgeval/.julia/packages/LaMEM/gnosH/test/read_timestep.jl:5 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/LaMEM/gnosH/test/PlumeLithosphereInteraction_passive_tracers.pvd": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:317 [3] open @ ./iostream.jl:296 [inlined] [4] open(f::Base.var"#358#359"{@Kwargs{}}, args::String; kwargs::@Kwargs{}) @ Base ./io.jl:408 [5] open @ ./io.jl:407 [inlined] [6] #readlines#356 @ ./io.jl:704 [inlined] [7] readlines @ ./io.jl:703 [inlined] [8] readPVD(FileName::String) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/gnosH/src/read_timestep.jl:257 [9] read_LaMEM_simulation(FileName::String, DirName::String; phase::Bool, surf::Bool, passive_tracers::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/gnosH/src/read_timestep.jl:451 [10] read_LaMEM_simulation @ ~/.julia/packages/LaMEM/gnosH/src/read_timestep.jl:439 [inlined] [11] read_LaMEM_timestep(FileName::String, TimeStep::Int64, DirName::String; fields::Nothing, phase::Bool, surf::Bool, passive_tracers::Bool, last::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/gnosH/src/read_timestep.jl:414 [12] read_LaMEM_timestep @ ~/.julia/packages/LaMEM/gnosH/src/read_timestep.jl:412 [inlined] [13] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/read_timestep.jl:8 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/read_timestep.jl:38 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [17] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:8 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:485 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [24] _start() @ Base ./client.jl:558 No partitioning file required for 1 core model setup run lamem mode save grid test: Error During Test at /home/pkgeval/.julia/packages/LaMEM/gnosH/test/run_lamem_save_grid_test.jl:3 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::Cmd) @ Base process.jl:716 length(!Matched::ExponentialBackOff) @ Base error.jl:281 length(!Matched::Compiler.MethodLookupResult) @ Base ../usr/share/julia/Compiler/src/methodtable.jl:10 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/gnosH/src/run_lamem_save_grid.jl:92 [2] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/run_lamem_save_grid_test.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [4] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/run_lamem_save_grid_test.jl:11 [inlined] [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [6] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:6 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:9 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:485 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [13] _start() @ Base ./client.jl:558 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 1000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [24, 24, 24] Number of cells : 13824 Number of faces : 43200 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-1., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.104056 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [12, 12, 12] Local coarse grid [nx,ny,nz] : [12, 12, 12] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.403291317974e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 6 1 SNES Function norm 1.464986509563e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 21.0213 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.270115706137e-06 |Div|_2 = 6.060118300339e-05 Momentum: |mRes|_2 = 1.463732547230e-03 -------------------------------------------------------------------------- Saving output ... done (0.00893693 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.788630241324e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 16 1 SNES Function norm 3.498272686734e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 20.7435 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.403141994493e-05 |Div|_2 = 9.116365292802e-05 Momentum: |mRes|_2 = 3.497084639973e-03 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.5943e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00717225 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 42.5874 (sec) -------------------------------------------------------------------------- | FineGrid | Cores | Nodes | CoarseGrid | CoaCores | Levels | SNES | KSP | TotalTime | CoarseTime | MemNode_Gb | Filename | | --------------- | ----- | ----- | ------------ | -------- | ------ | ---- | --- | --------- | ---------- | ---------- | -------------------------------- | | [512, 256, 256] | 512 | - | [32, 16, 16] | 512 | 5 | 1 | 72 | 26.26 | 9.9174 | - | input_files/128_cores_104812.txt | Saved file: Model3D.vts filesize compression: Error During Test at /home/pkgeval/.julia/packages/LaMEM/gnosH/test/test_compression.jl:6 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::Cmd) @ Base process.jl:716 length(!Matched::ExponentialBackOff) @ Base error.jl:281 length(!Matched::Compiler.MethodLookupResult) @ Base ../usr/share/julia/Compiler/src/methodtable.jl:10 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/gnosH/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/gnosH/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem @ ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [7] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:195 [8] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/test_compression.jl:7 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [10] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/test_compression.jl:23 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [12] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:6 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [14] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:12 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:485 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [19] _start() @ Base ./client.jl:558 rheology = Phase 0 (matrix): rho = 3000.0 eta = 1.0e20 ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000616304 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00168915 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000585774 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.855164213029e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.268605661839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000891941 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.368738149400e-19 Momentum: |mRes|_2 = 1.268605661765e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4291e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000551845 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012823718e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.590416869505e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106451 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.533293416683e-19 Momentum: |mRes|_2 = 1.590416869431e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4253e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000802392 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0177666 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.002f0, 0.002f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000694753 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00197155 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000670124 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 8.192074820223e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 1.996269872508e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0024415 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.385244779468e-17 |Div|_2 = 6.076331735643e-17 Momentum: |mRes|_2 = 1.996269780031e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5363e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000660734 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529035026473e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.131007585929e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000999651 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.533293416683e-18 Momentum: |mRes|_2 = 2.131007580413e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3381e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000706584 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0247153 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.02f0, 0.02f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000692123 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00226138 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.00110181 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.900625156863e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.193054234538e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111342 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 9.501471788263e-18 Momentum: |mRes|_2 = 1.193053856190e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3743e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000646584 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.531321061608e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.505745134977e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0012997 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.201851678990e-17 Momentum: |mRes|_2 = 1.505744655332e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4098e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000641804 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0269217 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.2f0, 0.2f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000726053 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00207895 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000740973 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.408582653022e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.331272599822e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00140316 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.468687011488e-16 Momentum: |mRes|_2 = 2.331226336186e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5031e-04 s -------------------------------------------------------------------------- Saving output ... done (0.001095 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.744843946556e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.645921959749e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00142126 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.642041997679e-16 Momentum: |mRes|_2 = 1.645840049152e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3654e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000693664 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.027201 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0f0, 2.0f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000792722 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00190947 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000664204 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.007037800205e-09 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 60 1 SNES Function norm 1.382743448093e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00320449 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.771561172376e-15 |Div|_2 = 1.956356625210e-14 Momentum: |mRes|_2 = 1.382743434253e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5499e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000565075 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 8.543884777184e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.658946166339e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00101167 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.285176065878e-15 Momentum: |mRes|_2 = 1.658896384666e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4377e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000895221 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0247802 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (20.0f0, 20.0f0) τ_linear = [0.0020000000949949026, 0.019999999552965164, 0.20000000298023224, 2.0, 20.0] τ_anal = [0.002, 0.02, 0.20000000000000004, 2.0, 20.0] ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000765143 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00215758 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000720593 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.732070997253e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.676863757548e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00145014 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.355252715607e-19 Momentum: |mRes|_2 = 1.676863757493e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5193e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000692603 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012298712e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.344047801612e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0014149 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.714274154578e-19 Momentum: |mRes|_2 = 1.344047801612e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3703e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000622964 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0267691 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00066601264f0, 0.00066601264f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00107776 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0021753 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000670654 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.538538587820e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.914610129611e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00119444 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.673617379884e-19 |Div|_2 = 2.395080882144e-18 Momentum: |mRes|_2 = 1.914610114630e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4136e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000620134 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012236651e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.060973992895e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00146604 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.761620017532e-18 Momentum: |mRes|_2 = 3.060973992895e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4406e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000671704 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0268732 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.001515742f0, 0.001515742f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000736653 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00180237 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000634274 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.574877395261e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.864620915674e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00107283 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.201851678990e-17 Momentum: |mRes|_2 = 1.864620528344e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4943e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000553835 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027476038e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.967399903915e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113887 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.321126039445e-17 Momentum: |mRes|_2 = 6.967399903915e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4005e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000559835 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0183649 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0034495955f0, 0.0034495955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000765472 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00206386 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000738503 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.757947606630e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.193302093907e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010934 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 3.193268922383e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3850e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000767262 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525989706e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.585686169509e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00140147 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 1.585686169509e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4079e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000629524 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0252668 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.007850748f0, 0.007850748f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000965821 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00226897 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000741163 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721068317499e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.327026433622e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111233 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.514142333402e-15 Momentum: |mRes|_2 = 6.325214401243e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4276e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000704914 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510065039e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.608776481627e-07 1 MMFD ||F||/||F0||=2.156412e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 7.337506294466e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00335636 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.717212732710e-15 Momentum: |mRes|_2 = 7.332473400632e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4242e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000703263 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0260282 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.017867092f0, 0.017867092f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000837142 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00225147 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000790292 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.732070997253e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.676863757548e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00112577 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.355252715607e-19 Momentum: |mRes|_2 = 1.676863757493e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4667e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000721573 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012298712e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.344047801612e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00143513 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.714274154578e-19 Momentum: |mRes|_2 = 1.344047801612e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4422e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000702593 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0264146 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00066601264f0, 0.00066601264f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000936021 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0021668 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000733203 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.536173268120e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 60 1 SNES Function norm 1.558141012496e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00361098 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.531965080989e-17 |Div|_2 = 1.438840450765e-16 Momentum: |mRes|_2 = 1.558140348159e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6133e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00103546 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012312017e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.061084525594e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00146451 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.505213034913e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 3.061084525594e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4002e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000842032 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0284182 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.001515742f0, 0.001515742f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00127985 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00220969 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000821982 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575177734083e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.883753867839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00140433 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.250926888277e-17 Momentum: |mRes|_2 = 1.883753452494e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4791e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000752732 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027475860e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.967410109455e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00150964 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.409296014026e-17 Momentum: |mRes|_2 = 6.967410109455e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4036e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000692984 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0263866 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0034495955f0, 0.0034495955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000885601 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00216227 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000792793 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.757910772242e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.290919515336e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00121309 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 3.290887327778e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4770e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000680704 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525989717e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.585686263715e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00137855 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 1.585686263715e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3578e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000611494 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0259269 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.007850748f0, 0.007850748f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000732543 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00179583 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000723734 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721073818982e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.206221377386e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100115 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.489520491948e-15 Momentum: |mRes|_2 = 6.204433662484e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3716e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000633373 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510065031e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.608776465926e-07 1 MMFD ||F||/||F0||=2.156412e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 7.323744093763e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00255468 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.717212732710e-15 Momentum: |mRes|_2 = 7.318701736004e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3895e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000639664 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0197873 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.017867092f0, 0.017867092f0) τ_num1 = [0.0006660126382485032, 0.0015157420421019197, 0.003449595533311367, 0.007850747555494308, 0.017867092043161392] τ_num2 = [0.0006660126382485032, 0.0015157420421019197, 0.003449595533311367, 0.007850747555494308, 0.017867092043161392] ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000856961 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00204847 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000800653 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.999601326924e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.245639208773e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00130526 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 2.019281067463e-19 Momentum: |mRes|_2 = 2.245639208773e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4638e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000761033 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529983614622e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 6.355036424707e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00159628 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.151964808266e-18 |Div|_2 = 3.319788279835e-18 Momentum: |mRes|_2 = 6.355036424707e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4275e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000677923 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.026213 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.28025904f0, 0.28025904f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000785863 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00185217 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000867631 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.166485402623e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 2.672158256062e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00217314 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.035766082959e-18 |Div|_2 = 7.132699033577e-18 Momentum: |mRes|_2 = 2.672158256062e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5071e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000644804 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.532640059961e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 1.214267533388e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00112342 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.433061127045e-14 |Div|_2 = 1.730949475871e-13 Momentum: |mRes|_2 = 1.214267533264e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3920e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000661013 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0215257 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.5410955f0, 0.5410955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000826002 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00192717 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000944641 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.042474277838e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 3.155075594917e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00141422 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.717288626685e-17 Momentum: |mRes|_2 = 3.155075594871e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5139e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000713903 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.542469102073e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.344382818817e-07 1 PICARD ||F||/||F0||=1.519890e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.130031258622e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00199436 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.488670298144e-13 |Div|_2 = 4.858601896386e-13 Momentum: |mRes|_2 = 1.130020813724e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5088e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000777992 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0261186 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.0446918f0, 1.0446918f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000781212 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0018858 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000905741 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.784431980867e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.724013332527e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00110285 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.481742263891e-16 Momentum: |mRes|_2 = 7.724013331105e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5092e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000563905 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.580001929353e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.526537046699e-06 1 PICARD ||F||/||F0||=2.864893e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 2.764898326264e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00179337 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 2.764898321667e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3826e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000682884 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.01981 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0169842f0, 2.0169842f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000715373 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00185942 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000714363 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.729160028127e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.853669481181e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00122216 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.534358746845e-15 Momentum: |mRes|_2 = 1.853669474831e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4550e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000636033 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.836925303655e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.739374791909e-05 1 PICARD ||F||/||F0||=4.757610e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.216630214054e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00196472 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.294731409828e-15 Momentum: |mRes|_2 = 1.216630213985e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4012e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000652624 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0197261 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (3.8941867f0, 3.8941867f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000820312 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00245072 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000810412 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.999601326924e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.245639208773e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00142702 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 2.019281067463e-19 Momentum: |mRes|_2 = 2.245639208773e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6332e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000849852 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529983614622e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 6.355036424707e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00138851 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.151964808266e-18 |Div|_2 = 3.319788279835e-18 Momentum: |mRes|_2 = 6.355036424707e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4122e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000802792 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0256493 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.28025904f0, 0.28025904f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000779443 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00188128 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000911391 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.166485402623e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 2.672158256062e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00215851 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.035766082959e-18 |Div|_2 = 7.132699033577e-18 Momentum: |mRes|_2 = 2.672158256062e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5319e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000618594 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.532640059961e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 1.214267533388e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106451 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.433061127045e-14 |Div|_2 = 1.730949475871e-13 Momentum: |mRes|_2 = 1.214267533264e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4025e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000575904 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0200678 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.5410955f0, 0.5410955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000805562 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00181052 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000763812 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.042474277838e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 3.155075594917e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0009979 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.717288626685e-17 Momentum: |mRes|_2 = 3.155075594871e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4974e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000643224 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.542469102073e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.344382818817e-07 1 PICARD ||F||/||F0||=1.519890e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.130031258622e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0017996 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.488670298144e-13 |Div|_2 = 4.858601896386e-13 Momentum: |mRes|_2 = 1.130020813724e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3838e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000622994 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0196829 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.0446918f0, 1.0446918f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000916292 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00190533 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000889771 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.784431980867e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.724013332527e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00137834 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.481742263891e-16 Momentum: |mRes|_2 = 7.724013331105e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4916e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000738253 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.580001929353e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.526537046699e-06 1 PICARD ||F||/||F0||=2.864893e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 2.764898326264e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00243195 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 2.764898321667e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3884e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000715043 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0263607 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0169842f0, 2.0169842f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000790112 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00213026 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000751842 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.729160028127e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.853669481181e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00142285 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.534358746845e-15 Momentum: |mRes|_2 = 1.853669474831e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4540e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000627974 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.836925303655e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.739374791909e-05 1 PICARD ||F||/||F0||=4.757610e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.216630214054e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00188014 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.294731409828e-15 Momentum: |mRes|_2 = 1.216630213985e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4220e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000652624 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.026744 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (3.8941867f0, 3.8941867f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000806982 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0021642 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000765282 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.733398697939e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.470853950173e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00138807 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.196926789768e-19 Momentum: |mRes|_2 = 8.470853949328e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4590e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000680774 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012429987e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.141630061900e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00132311 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.735570302230e-19 Momentum: |mRes|_2 = 5.141630061900e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5185e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000728153 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0260394 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00029242327f0, 0.00029242327f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000741013 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00184307 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000734263 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.537125835156e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.773537767839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108435 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.915082863629e-18 Momentum: |mRes|_2 = 1.773537757500e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5070e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000600864 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012259639e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.412456206055e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00110089 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.622685226975e-18 Momentum: |mRes|_2 = 1.412456206055e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4575e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000668243 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0190397 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00079578283f0, 0.00079578283f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000792842 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00176269 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000663974 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575355648999e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.497363577973e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102049 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.365922630907e-17 Momentum: |mRes|_2 = 1.497362954963e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5222e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000639184 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027377354e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.845756209644e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114328 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.226634733347e-17 Momentum: |mRes|_2 = 3.845756209644e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4025e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000627894 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0186517 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0021655946f0, 0.0021655946f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000725263 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00186671 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000742053 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.758143280721e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.557709372943e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109565 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.775557561563e-17 |Div|_2 = 1.316562550716e-16 Momentum: |mRes|_2 = 2.557675488163e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4461e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000642803 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525703377e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.046566607204e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00117662 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 1.046566607204e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3143e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000668784 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0189667 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0058933166f0, 0.0058933166f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000783762 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00184292 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.00097433 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721067804689e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.655639651614e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00105045 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.336885555458e-15 Momentum: |mRes|_2 = 5.654059359348e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4787e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000647054 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510051971e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.848062535603e-07 1 MMFD ||F||/||F0||=1.701850e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 4.525074343373e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00278157 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.383749925626e-15 Momentum: |mRes|_2 = 4.518791340168e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4174e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000670733 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0208242 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016037712f0, 0.016037712f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000788613 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00216493 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000745332 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.733398697939e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.470853950173e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106428 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.196926789768e-19 Momentum: |mRes|_2 = 8.470853949328e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6142e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000838922 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012429987e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.141630061900e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00154482 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.735570302230e-19 Momentum: |mRes|_2 = 5.141630061900e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3448e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000825152 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0245607 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00029242327f0, 0.00029242327f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000843282 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00215638 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000786493 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.537750739444e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 5 1 SNES Function norm 2.281739069316e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00140845 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.301042606983e-18 |Div|_2 = 4.215859886717e-18 Momentum: |mRes|_2 = 2.281739030369e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6275e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000789142 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012268549e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.412613368437e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0013399 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.502314598737e-18 Momentum: |mRes|_2 = 1.412613368437e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4095e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000737063 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0270733 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00079578283f0, 0.00079578283f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000828092 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00211503 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000748353 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575355648999e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.497363577973e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108232 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.365922630907e-17 Momentum: |mRes|_2 = 1.497362954963e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4603e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000748273 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027377354e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.845756209644e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00147083 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.226634733347e-17 Momentum: |mRes|_2 = 3.845756209644e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3911e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000697393 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0271106 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0021655946f0, 0.0021655946f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000746522 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00218046 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000917971 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.758143280721e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.557709372943e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113645 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.775557561563e-17 |Div|_2 = 1.316562550716e-16 Momentum: |mRes|_2 = 2.557675488163e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4832e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000714543 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525703371e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.046566599353e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00146842 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.468687011488e-16 Momentum: |mRes|_2 = 1.046566599353e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3907e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000730253 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0255067 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0058933166f0, 0.0058933166f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000751022 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00222741 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000837492 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721067804689e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.613639044842e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00144274 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.336885555458e-15 Momentum: |mRes|_2 = 5.612046925667e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4427e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000590214 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510051970e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.848062534818e-07 1 MMFD ||F||/||F0||=1.701850e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 4.645808098495e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00327751 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.790180836525e-15 Momentum: |mRes|_2 = 4.642357742975e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3654e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000762933 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0271873 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016037712f0, 0.016037712f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000816503 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00231354 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000867821 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643776193159e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.468632384106e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00131372 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.496925551340e-19 Momentum: |mRes|_2 = 1.468632376477e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4587e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000707513 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012493598e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.741239287980e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0013852 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.509145554517e-19 Momentum: |mRes|_2 = 1.741239287915e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3460e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000747952 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0258658 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6801193f-6, 1.8722288f-6) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000974171 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00221785 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000815363 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775949684e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.290700433835e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00131368 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.651407549307e-18 Momentum: |mRes|_2 = 6.290700217074e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4677e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000670473 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012083211e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.049795325108e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0013801 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 2.049795317997e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3574e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000691284 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0250875 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6801194f-5, 1.8722289f-5) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000772553 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00214098 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000781782 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775888174e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.509971681121e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00133121 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.387778780781e-17 Momentum: |mRes|_2 = 4.509950329163e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5006e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000673463 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529025548536e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.248139529364e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108044 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.250926888277e-17 Momentum: |mRes|_2 = 1.248138902504e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3677e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000659583 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0250861 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00016801193f0, 0.00018722289f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00096178 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00220574 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000820112 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775926557e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.453753162213e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00103829 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.241267076624e-16 Momentum: |mRes|_2 = 1.453700169309e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6671e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000607374 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530507771875e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.935424250481e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00137644 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.699674944388e-16 Momentum: |mRes|_2 = 1.935349616958e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3531e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000625504 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0247115 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0016801193f0, 0.0018722288f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000838781 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00189365 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000703394 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775934397e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.487533228243e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000947071 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.373270039557e-15 Momentum: |mRes|_2 = 1.481180744917e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4646e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000672834 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673362537378e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.370876409381e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00140922 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.505979781574e-15 Momentum: |mRes|_2 = 2.366088586156e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4322e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000702263 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0246357 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016801193f0, 0.01872228f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000875742 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00216272 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000727363 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742963921e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.318548988781e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00123353 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.580482678012e-19 Momentum: |mRes|_2 = 4.318548985889e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5411e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000694053 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529013223529e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.854501415834e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109594 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.484604966916e-19 Momentum: |mRes|_2 = 1.854501415775e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4257e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000713743 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.023635 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6800853f-6, 1.8721911f-6) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000774562 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00211978 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000805482 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742768540e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.768238622152e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00140859 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.505213034913e-19 |Div|_2 = 1.761620017532e-18 Momentum: |mRes|_2 = 4.768238296738e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5881e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000617144 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012070155e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.494164679288e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00140859 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 1.494164669533e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4043e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000741643 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0261879 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6800854f-5, 1.872191f-5) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000948231 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00190478 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000758483 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742707915e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.303083294658e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00233761 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.097135458930e-17 Momentum: |mRes|_2 = 1.303082832789e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5716e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000687844 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529025552216e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.737093484513e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00130694 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.430489624538e-17 Momentum: |mRes|_2 = 1.737092895512e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4304e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000690854 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0284469 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00016800854f0, 0.0001872191f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000763073 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00182059 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000780392 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742746428e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.276251701487e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00099872 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.401587864986e-16 Momentum: |mRes|_2 = 1.276174737524e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5071e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000714733 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530507773124e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.728004276619e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010899 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 1.727942975830e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3969e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000610704 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0187433 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0016800853f0, 0.001872191f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000780773 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00181908 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000782573 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742754277e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.380948806640e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00101637 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.368774871884e-15 Momentum: |mRes|_2 = 1.374148521835e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4550e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000701743 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673362539976e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.931460429801e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010608 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.382216518796e-15 Momentum: |mRes|_2 = 2.928199963534e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4001e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000556905 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0188751 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016800852f0, 0.018721903f0) Saved file: Model3D.vts Saved file: Model3D.vts Subduction3D: Error During Test at /home/pkgeval/.julia/packages/LaMEM/gnosH/test/test_examples.jl:13 Got exception outside of a @test LoadError: MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::Cmd) @ Base process.jl:716 length(!Matched::ExponentialBackOff) @ Base error.jl:281 length(!Matched::Compiler.MethodLookupResult) @ Base ../usr/share/julia/Compiler/src/methodtable.jl:10 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/gnosH/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/gnosH/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem @ ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [7] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:195 [8] top-level scope @ ~/.julia/packages/LaMEM/gnosH/example_scripts/Subduction3D.jl:99 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [10] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/test_examples.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/test_examples.jl:14 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [14] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/test_examples.jl:15 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [16] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:6 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [18] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:14 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:485 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [23] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/LaMEM/gnosH/example_scripts/Subduction3D.jl:91 caused by: MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::Cmd) @ Base process.jl:716 length(!Matched::ExponentialBackOff) @ Base error.jl:281 length(!Matched::Compiler.MethodLookupResult) @ Base ../usr/share/julia/Compiler/src/methodtable.jl:10 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/gnosH/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/gnosH/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem(model::Model, cores::Int64, args::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/gnosH/src/LaMEM_ModelGeneration/Model.jl:195 [7] top-level scope @ ~/.julia/packages/LaMEM/gnosH/example_scripts/Subduction3D.jl:94 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [9] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/test_examples.jl:6 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [11] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/test_examples.jl:14 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [13] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/test_examples.jl:15 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [15] top-level scope @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/gnosH/test/runtests.jl:14 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [19] top-level scope @ none:6 [20] eval(m::Module, e::Any) @ Core ./boot.jl:485 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [22] _start() @ Base ./client.jl:558 Precompiling packages... 363959.2 ms ✓ Makie 247633.3 ms ✓ CairoMakie 2 dependencies successfully precompiled in 629 seconds. 271 already precompiled. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 672 running 1 of 1 signal (10): User defined signal 1 _deletebeg! at ./array.jl:1220 [inlined] popfirst! at ./array.jl:1749 jfptr_popfirstNOT._47186.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2659 jfptr_abstract_call_known_52634.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_invoke at /source/src/gf.c:3366 tojlinvoke115560.1 at /opt/julia/lib/julia/sys.so (unknown line) j_abstract_call_known_52798.1 at /opt/julia/lib/julia/sys.so (unknown line) abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2862 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2855 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3014 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3032 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3289 typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4036 jfptr_typeinf_local_53276.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4228 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1359 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:909 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:879 handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 jfptr_handle1_51465.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 doworkloop at ./../usr/share/julia/Compiler/src/inferencestate.jl:1192 jfptr_doworkloop_50005.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4218 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1147 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1218 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1216 jfptr_typeinf_ext_toplevel_53666.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] jl_type_infer at /source/src/gf.c:395 jl_toplevel_eval_flex at /source/src/toplevel.c:1057 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_eval_module_expr at /source/src/toplevel.c:231 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:866 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:300 include_package_for_output at ./loading.jl:2995 jfptr_include_package_for_output_106372.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 include_string at ./loading.jl:2856 [inlined] exec_options at ./client.jl:327 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7fa62c4c1249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 636 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 #626 at ./asyncevent.jl:311 unknown function (ip: 0x7f4ed6d5f59f) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2781 │ [3] require_stdlib │ @ ./loading.jl:2779 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:327 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:346 └ @ Base Base.jl:337 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 632 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 #626 at ./asyncevent.jl:311 jfptr_YY.626_98745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2781 │ [3] require_stdlib │ @ ./loading.jl:2779 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:327 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:346 └ @ Base Base.jl:337 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 502 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 #626 at ./asyncevent.jl:311 jfptr_YY.626_98745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_97191.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2377 unknown function (ip: 0x7a14ad985143) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #201 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2317 withenv at ./env.jl:265 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2138 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1996 #182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2105 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x7a14ad9741fc) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#178 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2052 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2044 unknown function (ip: 0x7a14ad96e7c9) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2302 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:460 unknown function (ip: 0x7a14ad96e401) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 unknown function (ip: 0x7a14ad965b18) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:148 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 unknown function (ip: 0x7a14ad962acf) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:300 exec_options at ./client.jl:329 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a14af756249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007a14a1600010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:558 _start() ╎ 1 @Base/client.jl:329 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:300 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2906 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2846 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:485 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:146 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:147 test ╎ ╎ 1 @Pkg/src/API.jl:147 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:148 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159 test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2214 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2302 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2044 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2052 #sandbox#178 ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#18… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2105 (::Pkg.Operations.var"#182#183"… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:1996 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2138 (::Pkg.Operations.var"#186#187… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265 withenv(::Pkg.Operations.var"#201… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2317 (::Pkg.Operations.var"#201#20… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2377 subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:694 wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:141 wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1199 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1187 poptask(W::Base.Intrusiv… [632] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CairoMakie/JchUZ/src/CairoMakie.jl:3 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [502] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/LaMEM/gnosH/example_scripts/StrengthEnvelop.jl:1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 [636] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/basic_recipes/ablines.jl:1 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) operator new at /workspace/srcdir/gcc-13.2.0/libstdc++-v3/libsupc++/new_opa.cc:145 _ZN4llvm12MachineInstrC1ERNS_15MachineFunctionERKNS_11MCInstrDescENS_8DebugLocEb at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15MachineFunction18CreateMachineInstrERKNS_11MCInstrDescENS_8DebugLocEb at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) poptask at ./task.jl:1187 poptask at ./task.jl:1187 poptask at ./task.jl:1187 wait at ./task.jl:1199 _ZN12_GLOBAL__N_111X86FastISel18X86FastEmitCompareEPKN4llvm5ValueES4_NS1_3EVTERKNS1_8DebugLocE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) wait at ./task.jl:1199 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 #wait#551 at ./condition.jl:141 #wait#551 at ./condition.jl:141 _ZN12_GLOBAL__N_111X86FastISel12X86SelectCmpEPKN4llvm11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm8FastISel17selectInstructionEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm16SelectionDAGISel20SelectAllBasicBlocksERKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 _ZN4llvm16SelectionDAGISel20runOnMachineFunctionERNS_15MachineFunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) #626 at ./asyncevent.jl:311 #626 at ./asyncevent.jl:311 profile_printing_listener at ./Base.jl:326 jfptr_YY.626_98745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _ZN12_GLOBAL__N_115X86DAGToDAGISel20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 29921032 (Pool: 29921012; Big: 20); GC: 36 #start_profile_listener##0 at ./Base.jl:346 jfptr_YY.626_98745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 105519110 (Pool: 105517284; Big: 1826); GC: 107 jfptr_YY.start_profile_listenerYY.YY.0_111230.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 26423609 (Pool: 26417864; Big: 5745); GC: 39 _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1634 addModule at /source/src/jitlayers.cpp:2110 jl_compile_codeinst_now at /source/src/jitlayers.cpp:569 _jl_compile_codeinst at /source/src/jitlayers.cpp:758 [inlined] jl_compile_codeinst_impl at /source/src/jitlayers.cpp:902 jl_compile_method_internal at /source/src/gf.c:2890 _jl_invoke at /source/src/gf.c:3351 [inlined] ijl_apply_generic at /source/src/gf.c:3547 doc at /source/usr/share/julia/stdlib/v1.12/REPL/src/docview.jl:222 doc at /source/usr/share/julia/stdlib/v1.12/REPL/src/docview.jl:210 unknown function (ip: 0x7f4ea8749ca2) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_eval_module_expr at /source/src/toplevel.c:231 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:866 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:300 include_package_for_output at ./loading.jl:2995 jfptr_include_package_for_output_106372.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 include_string at ./loading.jl:2856 [inlined] exec_options at ./client.jl:327 _start at ./client.jl:558 PkgEval terminated after 2755.71s: test duration exceeded the time limit