Package evaluation of KissABC on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T20:29:54.441 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.17s ################################################################################ # Installation # Installing KissABC... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [9c9dad79] + KissABC v3.0.1 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [80f14c24] + AbstractMCMC v3.0.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.18.0 ⌅ [198e06fe] + BangBang v0.3.40 [9718e550] + Baselet v0.1.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [22cec73e] + InitialValues v0.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [9c9dad79] + KissABC v3.0.1 [10f19ff3] + LayoutPointers v0.1.17 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [e6f89c97] + LoggingExtras v0.4.9 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 ⌅ [128add7d] + MicroCollections v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [0987c9cc] + MonteCarloMeasurements v1.0.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.4 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [171d559e] + SplittablesBase v0.1.15 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.3.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [5d786b92] + TerminalLoggers v0.1.7 ⌃ [28d57a85] + Transducers v0.4.80 [3d5dd08c] + VectorizationBase v0.21.71 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 185.69s ################################################################################ # Testing # Testing KissABC Status `/tmp/jl_zTAczq/Project.toml` ⌅ [80f14c24] AbstractMCMC v3.0.0 [31c24e10] Distributions v0.25.118 [9c9dad79] KissABC v3.0.1 ⌅ [0987c9cc] MonteCarloMeasurements v1.0.0 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zTAczq/Manifest.toml` ⌅ [80f14c24] AbstractMCMC v3.0.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.18.0 ⌅ [198e06fe] BangBang v0.3.40 [9718e550] Baselet v0.1.1 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [1a297f60] FillArrays v1.13.0 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [22cec73e] InitialValues v0.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [9c9dad79] KissABC v3.0.1 [10f19ff3] LayoutPointers v0.1.17 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [2ab3a3ac] LogExpFunctions v0.3.29 ⌅ [e6f89c97] LoggingExtras v0.4.9 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 ⌅ [128add7d] MicroCollections v0.1.4 [e1d29d7a] Missings v1.2.0 ⌅ [0987c9cc] MonteCarloMeasurements v1.0.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [33c8b6b6] ProgressLogging v0.1.4 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [171d559e] SplittablesBase v0.1.15 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.3.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [5d786b92] TerminalLoggers v0.1.7 ⌃ [28d57a85] Transducers v0.4.80 [3d5dd08c] VectorizationBase v0.21.71 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [8e850b90] libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Factored | 10 10 2.4s ┌ Warning: `Product(v)` is deprecated, please use `product_distribution(v)` │ caller = top-level scope at runtests.jl:25 └ @ Core ~/.julia/packages/KissABC/lBWGp/test/runtests.jl:25 Test Summary: | Pass Total Time Push | 4 4 4.3s Test Summary: | Pass Total Time Tiny Data, Approximate Bayesian Computation and the Socks of Karl Broman | 4 4 25.2s Test Summary: | Pass Total Time Normal dist -> Dirac Delta inference | 2 2 9.5s ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/088Ow/src/sample.jl:253 sim(res) = 1.5 ± 0.004 Test Summary: | Pass Total Time Normal dist -> Dirac Delta inference, MCMCThreads | 1 1 4.4s Test Summary: | Pass Total Time Normal dist + Uniform Distr inference | 2 2 6.8s Test Summary: | Pass Total Time Inference on drifted Wiener Process | 2 2 7.3s :Hard threshold: testing m = 0.25 ± 4.8e-15 r = -0.0226 ± 0.67 Classical Mixture Model 0.1N+N: Test Failed at /home/pkgeval/.julia/packages/KissABC/lBWGp/test/runtests.jl:172 Expression: testst("Hard threshold", res) Stacktrace: [1] top-level scope @ ~/.julia/packages/KissABC/lBWGp/test/runtests.jl:134 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/KissABC/lBWGp/test/runtests.jl:172 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] :Kernelized threshold: testing m = 0.25 ± 4.8e-15 r = 0.00848 ± 0.71 Classical Mixture Model 0.1N+N: Test Failed at /home/pkgeval/.julia/packages/KissABC/lBWGp/test/runtests.jl:173 Expression: testst("Kernelized threshold", resk) Stacktrace: [1] top-level scope @ ~/.julia/packages/KissABC/lBWGp/test/runtests.jl:134 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/KissABC/lBWGp/test/runtests.jl:173 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] :SMC: testing m = 0.25 ± 4.8e-15 r = -0.0321 ± 0.64 Classical Mixture Model 0.1N+N: Test Failed at /home/pkgeval/.julia/packages/KissABC/lBWGp/test/runtests.jl:174 Expression: testst("SMC", ressmc) Stacktrace: [1] top-level scope @ ~/.julia/packages/KissABC/lBWGp/test/runtests.jl:134 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/KissABC/lBWGp/test/runtests.jl:174 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] Test Summary: | Fail Total Time Classical Mixture Model 0.1N+N | 3 3 28.6s ERROR: LoadError: Some tests did not pass: 0 passed, 3 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/KissABC/lBWGp/test/runtests.jl:133 Testing failed after 113.89s ERROR: LoadError: Package KissABC errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 337.17s: package has test failures