Package evaluation of JUDI on Julia 1.12.0-DEV.1799 (64d37f533b*) started at 2025-03-24T20:54:19.810 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 11.02s ################################################################################ # Installation # Installing JUDI... Resolving package versions... Installed IntegerMathUtils ──────────── v0.1.2 Installed MicroMamba ────────────────── v0.1.14 Installed IrrationalConstants ───────── v0.2.4 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed Scratch ───────────────────── v1.2.1 Installed ContextVariablesX ─────────── v0.1.3 Installed Transducers ───────────────── v0.4.84 Installed ArgCheck ──────────────────── v2.5.0 Installed JSON3 ─────────────────────── v1.14.1 Installed PythonCall ────────────────── v0.9.24 Installed Preferences ───────────────── v1.4.3 Installed Accessors ─────────────────── v0.1.42 Installed FFTW ──────────────────────── v1.8.1 Installed FLoopsBase ────────────────── v0.1.1 Installed IterTools ─────────────────── v1.10.0 Installed AbstractNFFTs ─────────────── v0.8.2 Installed DistributedArrays ─────────── v0.6.7 Installed TableTraits ───────────────── v1.0.1 Installed SpecialFunctions ──────────── v2.5.0 Installed DataAPI ───────────────────── v1.16.0 Installed Dierckx ───────────────────── v0.5.4 Installed Parsers ───────────────────── v2.8.1 Installed BasicInterpolators ────────── v0.7.1 Installed Tables ────────────────────── v1.12.0 Installed DSP ───────────────────────── v0.7.10 Installed Setfield ──────────────────── v1.1.2 Installed MKL_jll ───────────────────── v2025.0.1+1 Installed RecipesBase ───────────────── v1.3.4 Installed Baselet ───────────────────── v0.1.1 Installed Primes ────────────────────── v0.5.7 Installed AbstractFFTs ──────────────── v1.5.0 Installed JLLWrappers ───────────────── v1.7.0 Installed Pidfile ───────────────────── v1.3.0 Installed Dierckx_jll ───────────────── v0.2.0+0 Installed micromamba_jll ────────────── v1.5.8+0 Installed StaticArraysCore ──────────── v1.4.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ConstructionBase ──────────── v1.5.8 Installed MicroCollections ──────────── v0.2.0 Installed IterativeSolvers ──────────── v0.9.4 Installed PrecompileTools ───────────── v1.2.1 Installed Nullables ─────────────────── v1.0.0 Installed DefineSingletons ──────────── v0.1.2 Installed DataValueInterfaces ───────── v1.0.0 Installed NameResolution ────────────── v0.1.5 Installed OrderedCollections ────────── v1.8.0 Installed ChainRulesCore ────────────── v1.25.1 Installed InplaceOps ────────────────── v0.3.0 Installed InitialValues ─────────────── v0.3.1 Installed Reexport ──────────────────── v1.2.2 Installed Statistics ────────────────── v1.11.1 Installed SplittablesBase ───────────── v0.1.15 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed IntelOpenMP_jll ───────────── v2025.0.4+0 Installed Polynomials ───────────────── v4.0.19 Installed Memoize ───────────────────── v0.4.4 Installed Wavelets ──────────────────── v0.9.5 Installed BangBang ──────────────────── v0.4.4 Installed MacroTools ────────────────── v0.5.15 Installed UnsafePointers ────────────── v1.0.0 Installed NFFT ──────────────────────── v0.13.6 Installed MLStyle ───────────────────── v0.4.17 Installed PrettyPrint ───────────────── v0.2.0 Installed Compat ────────────────────── v4.16.0 Installed FFTW_jll ──────────────────── v3.3.10+3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed CompositionsBase ──────────── v0.1.2 Installed JuliaVariables ────────────── v0.2.4 Installed InverseFunctions ──────────── v0.1.17 Installed CondaPkg ──────────────────── v0.2.26 Installed StructTypes ───────────────── v1.11.0 Installed pixi_jll ──────────────────── v0.41.3+0 Installed FLoops ────────────────────── v0.2.2 Installed DocStringExtensions ───────── v0.9.3 Installed JOLI ──────────────────────── v0.9.0 Installed JUDI ──────────────────────── v4.1.0 Installed SegyIO ────────────────────── v0.8.5 Installing 4 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Dierckx 149.2 KiB Installed artifact FFTW 2.2 MiB Updating `~/.julia/environments/v1.12/Project.toml` [f3b833dc] + JUDI v4.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7f219486] + AbstractNFFTs v0.8.2 [7d9f7c33] + Accessors v0.1.42 [dce04be8] + ArgCheck v2.5.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [26cce99e] + BasicInterpolators v0.7.1 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [992eb4ea] + CondaPkg v0.2.26 [187b0558] + ConstructionBase v1.5.8 [6add18c4] + ContextVariablesX v0.1.3 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [39dd38d3] + Dierckx v0.5.4 [aaf54ef3] + DistributedArrays v0.6.7 [ffbed154] + DocStringExtensions v0.9.3 [7a1cc6ca] + FFTW v1.8.1 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [22cec73e] + InitialValues v0.3.1 [505f98c9] + InplaceOps v0.3.0 [18e54dd8] + IntegerMathUtils v0.1.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [bb331ad6] + JOLI v0.9.0 [0f8b85d8] + JSON3 v1.14.1 [f3b833dc] + JUDI v4.1.0 [b14d175d] + JuliaVariables v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.15 [c03570c3] + Memoize v0.4.4 [128add7d] + MicroCollections v0.2.0 [0b3b1443] + MicroMamba v0.1.14 [efe261a4] + NFFT v0.13.6 [71a1bf82] + NameResolution v0.1.5 [4d1e1d77] + Nullables v1.0.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [fa939f87] + Pidfile v1.3.0 [f27b6e38] + Polynomials v4.0.19 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [27ebfcd6] + Primes v0.5.7 [6099a3de] + PythonCall v0.9.24 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [157a0f19] + SegyIO v0.8.5 [efcf1570] + Setfield v1.1.2 [276daf66] + SpecialFunctions v2.5.0 [171d559e] + SplittablesBase v0.1.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [28d57a85] + Transducers v0.4.84 [e17b2a0c] + UnsafePointers v1.0.0 ⌅ [29a6e085] + Wavelets v0.9.5 [cd4c43a9] + Dierckx_jll v0.2.0+0 [f5851436] + FFTW_jll v3.3.10+3 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f8abcde7] + micromamba_jll v1.5.8+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building JUDI → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/50b459c1bdb8f8bbeaed538507409a936a5f7ed9/build.log` Installation completed after 331.14s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 7132.9 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: ZygoteJUDIExt Failed to precompile ZygoteJUDIExt [e23d9f1c-08bd-5e6e-ab2f-14dcf5d0d6c8] to "/home/pkgeval/.julia/compiled/v1.12/ZygoteJUDIExt/jl_eat2LB". ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll -> pixi_jll && DefineSingletons && ChainRulesCoreSparseArraysExt && BangBang && SpecialFunctionsChainRulesCoreExt && JOLI && BangBangChainRulesCoreExt && PolynomialsChainRulesCoreExt && NFFT && Accessors && LogExpFunctionsInverseFunctionsExt && ContextVariablesX && PythonCall && AbstractNFFTs && LinearAlgebraExt && IntegerMathUtils && JUDI && InverseFunctionsDatesExt && Transducers && TestExt && CompositionsBaseInverseFunctionsExt && Wavelets && InverseFunctionsTestExt && MLStyle && InverseFunctions && LogExpFunctionsChainRulesCoreExt && MicroCollections && AbstractFFTsTestExt && PrettyPrint && AbstractFFTsChainRulesCoreExt && ArgCheck && SegyIO && FLoopsBase && LazyArtifacts && SplittablesBase && NameResolution && Memoize && JuliaVariables && CompositionsBase && IterativeSolvers && DistributedArrays && Test && Nullables && FLoops && SharedArrays && BasicInterpolators && InteractiveUtils && ChainRulesCore && InitialValues && BangBangTablesExt && Primes && Baselet && InplaceOps") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2209 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2217 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2479 [4] _require_prelocked @ ./loading.jl:2478 [inlined] [5] macro expansion @ ./lock.jl:294 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2476 [7] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [8] invoke_in_world @ ./essentials.jl:1087 [inlined] [9] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2474 [10] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [11] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [12] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [13] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [14] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [15] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [16] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1295 [17] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [18] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2108 [19] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2621 [20] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [21] macro expansion @ ./loading.jl:2412 [inlined] [22] macro expansion @ ./lock.jl:294 [inlined] [23] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [24] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [25] invoke_in_world @ ./essentials.jl:1087 [inlined] [26] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [27] top-level scope @ ~/.julia/packages/JUDI/wVmYb/ext/ZygoteJUDIExt.jl:3 [28] include(mod::Module, _path::String) @ Base ./Base.jl:300 [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [30] top-level scope @ stdin:6 [31] eval(m::Module, e::Any) @ Core ./boot.jl:485 [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [33] include_string @ ./loading.jl:2856 [inlined] [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [35] _start() @ Base ./client.jl:558 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/JUDI/wVmYb/ext/ZygoteJUDIExt.jl:1 in expression starting at stdin:6 FluxJUDIExt Failed to precompile FluxJUDIExt [69fb6015-e88d-5ed7-837a-bd32e4f16230] to "/home/pkgeval/.julia/compiled/v1.12/FluxJUDIExt/jl_6HcbA5". ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll -> pixi_jll && DefineSingletons && ChainRulesCoreSparseArraysExt && BangBang && SpecialFunctionsChainRulesCoreExt && JOLI && BangBangChainRulesCoreExt && PolynomialsChainRulesCoreExt && NFFT && Accessors && LogExpFunctionsInverseFunctionsExt && ContextVariablesX && PythonCall && AbstractNFFTs && LinearAlgebraExt && IntegerMathUtils && JUDI && InverseFunctionsDatesExt && Transducers && TestExt && CompositionsBaseInverseFunctionsExt && Wavelets && InverseFunctionsTestExt && MLStyle && InverseFunctions && LogExpFunctionsChainRulesCoreExt && MicroCollections && AbstractFFTsTestExt && PrettyPrint && AbstractFFTsChainRulesCoreExt && ArgCheck && SegyIO && FLoopsBase && LazyArtifacts && SplittablesBase && NameResolution && Memoize && JuliaVariables && CompositionsBase && IterativeSolvers && DistributedArrays && Test && Nullables && FLoops && SharedArrays && BasicInterpolators && InteractiveUtils && ChainRulesCore && InitialValues && BangBangTablesExt && Primes && Baselet && InplaceOps") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2209 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2217 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2479 [4] _require_prelocked @ ./loading.jl:2478 [inlined] [5] macro expansion @ ./lock.jl:294 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2476 [7] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [8] invoke_in_world @ ./essentials.jl:1087 [inlined] [9] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2474 [10] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [11] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [12] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [13] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [14] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [15] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [16] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1295 [17] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [18] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2108 [19] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2621 [20] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [21] macro expansion @ ./loading.jl:2412 [inlined] [22] macro expansion @ ./lock.jl:294 [inlined] [23] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [24] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [25] invoke_in_world @ ./essentials.jl:1087 [inlined] [26] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [27] top-level scope @ ~/.julia/packages/JUDI/wVmYb/ext/FluxJUDIExt.jl:3 [28] include(mod::Module, _path::String) @ Base ./Base.jl:300 [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [30] top-level scope @ stdin:6 [31] eval(m::Module, e::Any) @ Core ./boot.jl:485 [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [33] include_string @ ./loading.jl:2856 [inlined] [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [35] _start() @ Base ./client.jl:558 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/JUDI/wVmYb/ext/FluxJUDIExt.jl:1 in expression starting at stdin:6 JLD2JUDIExt Failed to precompile JLD2JUDIExt [3ff00e4c-8e8e-5fd5-9aa3-a600386b53e6] to "/home/pkgeval/.julia/compiled/v1.12/JLD2JUDIExt/jl_E18tDV". ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll -> pixi_jll && DefineSingletons && ChainRulesCoreSparseArraysExt && BangBang && SpecialFunctionsChainRulesCoreExt && JOLI && BangBangChainRulesCoreExt && PolynomialsChainRulesCoreExt && NFFT && Accessors && LogExpFunctionsInverseFunctionsExt && ContextVariablesX && PythonCall && AbstractNFFTs && LinearAlgebraExt && IntegerMathUtils && JUDI && InverseFunctionsDatesExt && Transducers && TestExt && CompositionsBaseInverseFunctionsExt && Wavelets && InverseFunctionsTestExt && MLStyle && InverseFunctions && LogExpFunctionsChainRulesCoreExt && MicroCollections && AbstractFFTsTestExt && PrettyPrint && AbstractFFTsChainRulesCoreExt && ArgCheck && SegyIO && FLoopsBase && LazyArtifacts && SplittablesBase && NameResolution && Memoize && JuliaVariables && CompositionsBase && IterativeSolvers && DistributedArrays && Test && Nullables && FLoops && SharedArrays && BasicInterpolators && InteractiveUtils && ChainRulesCore && InitialValues && BangBangTablesExt && Primes && Baselet && InplaceOps") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2209 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2217 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2479 [4] _require_prelocked @ ./loading.jl:2478 [inlined] [5] macro expansion @ ./lock.jl:294 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2476 [7] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [8] invoke_in_world @ ./essentials.jl:1087 [inlined] [9] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2474 [10] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [11] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [12] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [13] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [14] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [15] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [16] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1295 [17] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [18] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2108 [19] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2621 [20] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [21] macro expansion @ ./loading.jl:2412 [inlined] [22] macro expansion @ ./lock.jl:294 [inlined] [23] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [24] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [25] invoke_in_world @ ./essentials.jl:1087 [inlined] [26] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [27] top-level scope @ ~/.julia/packages/JUDI/wVmYb/ext/JLD2JUDIExt.jl:3 [28] include(mod::Module, _path::String) @ Base ./Base.jl:300 [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [30] top-level scope @ stdin:6 [31] eval(m::Module, e::Any) @ Core ./boot.jl:485 [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [33] include_string @ ./loading.jl:2856 [inlined] [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [35] _start() @ Base ./client.jl:558 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/JUDI/wVmYb/ext/JLD2JUDIExt.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1098.97s ################################################################################ # Testing # Testing JUDI Status `/tmp/jl_vr69Xc/Project.toml` ⌅ [4c88cf16] Aqua v0.5.6 [d360d2e6] ChainRulesCore v1.25.1 ⌅ [717857b8] DSP v0.7.10 [39dd38d3] Dierckx v0.5.4 [7a1cc6ca] FFTW v1.8.1 ⌅ [587475ba] Flux v0.14.25 [033835bb] JLD2 v0.5.12 [bb331ad6] JOLI v0.9.0 [f3b833dc] JUDI v4.1.0 [bac558e1] OrderedCollections v1.8.0 [6099a3de] PythonCall v0.9.24 [ae029012] Requires v1.3.1 [157a0f19] SegyIO v0.8.5 [a759f4b9] TimerOutputs v0.5.28 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vr69Xc/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7f219486] AbstractNFFTs v0.8.2 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 ⌅ [4c88cf16] Aqua v0.5.6 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [26cce99e] BasicInterpolators v0.7.1 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [992eb4ea] CondaPkg v0.2.26 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [39dd38d3] Dierckx v0.5.4 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [aaf54ef3] DistributedArrays v0.6.7 [ffbed154] DocStringExtensions v0.9.3 [e2ba6199] ExprTools v0.1.10 [7a1cc6ca] FFTW v1.8.1 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 ⌅ [587475ba] Flux v0.14.25 [f6369f11] ForwardDiff v0.10.38 ⌅ [d9f16b24] Functors v0.4.12 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.14 [22cec73e] InitialValues v0.3.1 [505f98c9] InplaceOps v0.3.0 [18e54dd8] IntegerMathUtils v0.1.2 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.12 [692b3bcd] JLLWrappers v1.7.0 [bb331ad6] JOLI v0.9.0 [0f8b85d8] JSON3 v1.14.1 [f3b833dc] JUDI v4.1.0 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.34 [929cbde3] LLVM v9.2.0 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 ⌃ [7e8f7934] MLDataDevices v1.5.3 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.15 [c03570c3] Memoize v0.4.4 [128add7d] MicroCollections v0.2.0 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [efe261a4] NFFT v0.13.6 [872c559c] NNlib v0.9.29 [77ba4419] NaNMath v1.1.2 [71a1bf82] NameResolution v0.1.5 [4d1e1d77] Nullables v1.0.0 [0b1bfda6] OneHotArrays v0.2.6 ⌅ [3bd65402] Optimisers v0.3.4 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 [f27b6e38] Polynomials v4.0.19 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.4 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.24 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.2.1 [157a0f19] SegyIO v0.8.5 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [09ab397b] StructArrays v0.7.0 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [a759f4b9] TimerOutputs v0.5.28 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [013be700] UnsafeAtomics v0.3.0 [e17b2a0c] UnsafePointers v1.0.0 ⌅ [29a6e085] Wavelets v0.9.5 ⌅ [e88e6eb3] Zygote v0.6.75 [700de1a5] ZygoteRules v0.2.7 [cd4c43a9] Dierckx_jll v0.2.0+0 [f5851436] FFTW_jll v3.3.10+3 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [dad2f222] LLVMExtra_jll v0.0.35+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f8abcde7] micromamba_jll v1.5.8+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll -> pixi_jll && DefineSingletons && ChainRulesCoreSparseArraysExt && BangBang && SpecialFunctionsChainRulesCoreExt && JOLI && BangBangChainRulesCoreExt && PolynomialsChainRulesCoreExt && NFFT && Accessors && LogExpFunctionsInverseFunctionsExt && ContextVariablesX && PythonCall && AbstractNFFTs && LinearAlgebraExt && IntegerMathUtils && JUDI && InverseFunctionsDatesExt && Transducers && TestExt && CompositionsBaseInverseFunctionsExt && Wavelets && InverseFunctionsTestExt && MLStyle && InverseFunctions && LogExpFunctionsChainRulesCoreExt && MicroCollections && AbstractFFTsTestExt && PrettyPrint && AbstractFFTsChainRulesCoreExt && ArgCheck && SegyIO && FLoopsBase && LazyArtifacts && SplittablesBase && NameResolution && Memoize && JuliaVariables && CompositionsBase && IterativeSolvers && DistributedArrays && Test && Nullables && FLoops && SharedArrays && BasicInterpolators && InteractiveUtils && ChainRulesCore && InitialValues && BangBangTablesExt && Primes && Baselet && InplaceOps") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2209 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2217 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2479 [4] _require_prelocked @ ./loading.jl:2478 [inlined] [5] macro expansion @ ./lock.jl:294 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2476 [7] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [8] invoke_in_world @ ./essentials.jl:1087 [inlined] [9] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2474 [10] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [11] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [12] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [13] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [14] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1419 [15] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1407 [16] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1295 [17] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [18] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2108 [19] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2621 [20] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [21] macro expansion @ ./loading.jl:2412 [inlined] [22] macro expansion @ ./lock.jl:294 [inlined] [23] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [24] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [25] invoke_in_world @ ./essentials.jl:1087 [inlined] [26] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [27] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [28] top-level scope @ none:6 [29] eval(m::Module, e::Any) @ Core ./boot.jl:485 [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [31] _start() @ Base ./client.jl:558 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/JUDI/wVmYb/test/runtests.jl:9 Testing failed after 29.11s ERROR: LoadError: Package JUDI errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1548.68s: package fails to precompile