Package evaluation of InducingPoints on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T17:44:53.822 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.25s ################################################################################ # Installation # Installing InducingPoints... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [b4bd816d] + InducingPoints v0.4.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [99985d1d] + AbstractGPs v0.5.23 [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [d360d2e6] + ChainRulesCore v1.25.1 [aaaa29a8] + Clustering v0.15.8 [861a8166] + Combinatorics v1.0.2 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [4d968f93] + DeterminantalPointProcesses v0.2.2 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [b4bd816d] + InducingPoints v0.4.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.21 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.3.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 97.68s ################################################################################ # Testing # Testing InducingPoints Status `/tmp/jl_joTZfz/Project.toml` [4d968f93] DeterminantalPointProcesses v0.2.2 [b4f34e82] Distances v0.10.12 [b4bd816d] InducingPoints v0.4.1 [ec8451be] KernelFunctions v0.10.65 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_joTZfz/Manifest.toml` [99985d1d] AbstractGPs v0.5.23 [1520ce14] AbstractTrees v0.4.5 [66dad0bd] AliasTables v1.1.3 [d360d2e6] ChainRulesCore v1.25.1 [aaaa29a8] Clustering v0.15.8 [861a8166] Combinatorics v1.0.2 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [4d968f93] DeterminantalPointProcesses v0.2.2 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [1a297f60] FillArrays v1.13.0 [d9f16b24] Functors v0.5.2 [34004b35] HypergeometricFunctions v0.3.28 [b4bd816d] InducingPoints v0.4.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.0 [ec8451be] KernelFunctions v0.10.65 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.21 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.3.2 [62fd8b95] TensorCore v0.1.1 [700de1a5] ZygoteRules v0.2.7 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [8e850b90] libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Vector{Real}: Error During Test at /home/pkgeval/.julia/packages/InducingPoints/A1ifE/test/test_utils.jl:50 Got exception outside of a @test PosDefException: matrix is not positive definite; Factorization failed. Stacktrace: [1] checkpositivedefinite @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/factorization.jl:68 [inlined] [2] #cholesky!#161 @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/cholesky.jl:418 [inlined] [3] cholesky! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/cholesky.jl:416 [inlined] [4] _cholesky @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/cholesky.jl:552 [inlined] [5] cholesky (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/cholesky.jl:542 [inlined] [6] _compute_intermediates(fx::AbstractGPs.FiniteGP{AbstractGPs.GP{AbstractGPs.ZeroMean{Float64}, SqExponentialKernel{Euclidean}}, Vector{Float32}, Diagonal{Float64, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}}, y::Vector{Float64}, fz::AbstractGPs.FiniteGP{AbstractGPs.GP{AbstractGPs.ZeroMean{Float64}, SqExponentialKernel{Euclidean}}, Vector{Float32}, Diagonal{Float64, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}}) @ AbstractGPs ~/.julia/packages/AbstractGPs/r6C7U/src/sparse_approximations.jl:298 [7] approx_log_evidence @ ~/.julia/packages/AbstractGPs/r6C7U/src/sparse_approximations.jl:250 [inlined] [8] elbo @ ~/.julia/packages/AbstractGPs/r6C7U/src/sparse_approximations.jl:254 [inlined] [9] greedy_ip(rng::Random.TaskLocalRNG, X::Vector{Float32}, y::Vector{Float64}, kernel::SqExponentialKernel{Euclidean}, m::Int64, s::Int64, noise::Float64) @ InducingPoints ~/.julia/packages/InducingPoints/A1ifE/src/offline/greedyip.jl:78 [10] #inducingpoints#15 @ ~/.julia/packages/InducingPoints/A1ifE/src/offline/greedyip.jl:44 [inlined] [11] inducingpoints @ ~/.julia/packages/InducingPoints/A1ifE/src/offline/greedyip.jl:30 [inlined] [12] #inducingpoints#3 @ ~/.julia/packages/InducingPoints/A1ifE/src/InducingPoints.jl:78 [inlined] [13] macro expansion @ ~/.julia/packages/InducingPoints/A1ifE/test/test_utils.jl:53 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [15] test_Zalg(alg::Greedy, N::Int64, D::Int64; kwargs::@Kwargs{kernel::SqExponentialKernel{Euclidean}, noise::Float64, y::Vector{Float64}}) @ Main ~/.julia/packages/InducingPoints/A1ifE/test/test_utils.jl:51 [16] test_Zalg @ ~/.julia/packages/InducingPoints/A1ifE/test/test_utils.jl:49 [inlined] [17] top-level scope @ ~/.julia/packages/InducingPoints/A1ifE/test/offline/greedyip.jl:2 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [19] macro expansion @ ~/.julia/packages/InducingPoints/A1ifE/test/offline/greedyip.jl:23 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [21] macro expansion @ ~/.julia/packages/InducingPoints/A1ifE/test/runtests.jl:13 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [23] macro expansion @ ~/.julia/packages/InducingPoints/A1ifE/test/runtests.jl:12 [inlined] [24] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [25] top-level scope @ ~/.julia/packages/InducingPoints/A1ifE/test/runtests.jl:11 [26] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [27] top-level scope @ none:6 [28] eval(m::Module, e::Any) @ Core ./boot.jl:485 [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [30] _start() @ Base ./client.jl:558 [ Info: ρ_accept reset to : 0.6466323202957595 [ Info: ρ_accept reset to : 0.3425123447848997 [ Info: ρ_accept reset to : 0.23175585314185215 [ Info: ρ_accept reset to : 0.15281123390752427 [ Info: ρ_accept reset to : 0.06802772623994137 [ Info: ρ_accept reset to : 0.05010161910631524 [ Info: ρ_accept reset to : 0.022062770689588874 [ Info: ρ_accept reset to : 0.95 [ Info: ρ_accept reset to : 0.95 [ Info: ρ_accept reset to : 0.6979082561236605 [ Info: ρ_accept reset to : 0.6637901220994068 [ Info: ρ_accept reset to : 0.5264646984741311 [ Info: ρ_accept reset to : 0.48836163650223396 [ Info: ρ_accept reset to : 0.45565201376657327 [ Info: ρ_accept reset to : 0.3112177948142228 [ Info: ρ_accept reset to : 0.11771919700282683 [ Info: ρ_accept reset to : 0.11465948840261417 [ Info: ρ_accept reset to : 0.11465948840261417 [ Info: ρ_accept reset to : 0.11465948840261417 [ Info: ρ_accept reset to : 0.11465948840261417 [ Info: ρ_accept reset to : 0.11465948840261417 [ Info: ρ_accept reset to : 0.09602522059346964 [ Info: ρ_accept reset to : 0.08134467038953638 [ Info: ρ_accept reset to : 0.06567209059734533 [ Info: ρ_accept reset to : 0.06203108046597891 [ Info: ρ_accept reset to : 0.04526833967419802 [ Info: ρ_accept reset to : 0.04139838129450418 [ Info: ρ_accept reset to : 0.032825308424796744 [ Info: ρ_accept reset to : 0.028183792877161228 [ Info: ρ_accept reset to : 0.02672174570792494 [ Info: ρ_accept reset to : 0.024216865149604413 [ Info: ρ_accept reset to : 0.017582226002603358 [ Info: ρ_accept reset to : 0.017582226002603358 [ Info: ρ_accept reset to : 0.017582226002603358 [ Info: ρ_accept reset to : 0.017582226002603358 [ Info: ρ_accept reset to : 0.013765814773395838 [ Info: ρ_accept reset to : 0.010999886750112951 [ Info: ρ_accept reset to : 0.008332726076336656 [ Info: ρ_accept reset to : 0.005560629846342206 [ Info: ρ_accept reset to : 0.005197182605129859 [ Info: ρ_accept reset to : 0.004713672486773727 [ Info: ρ_accept reset to : 0.004616962146342471 [ Info: ρ_accept reset to : 0.004059547334100807 [ Info: ρ_accept reset to : 0.0038995675651602975 [ Info: ρ_accept reset to : 0.0037267643566068786 [ Info: ρ_accept reset to : 0.0037267643566068786 [ Info: ρ_accept reset to : 0.0037267643566068786 Test Summary: | Pass Error Total Time InducingPoints.jl | 1058 1 1059 5m30.9s Offline | 869 1 870 3m24.6s CoverTree | 81 81 55.5s greedy_var_minimization | 679 679 37.0s Greedy | 20 1 21 29.9s Test Vector{Real} | 3 1 4 9.2s Test Vector{Vector} | 6 6 3.8s Test ColVecs | 4 4 4.0s kDPP | 20 20 20.4s k-Means | 21 21 35.0s randomsubset.jl | 32 32 7.4s stddpp.jl | 16 16 6.1s Online | 189 189 2m06.3s ERROR: LoadError: Some tests did not pass: 1058 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/InducingPoints/A1ifE/test/runtests.jl:10 Testing failed after 352.51s ERROR: LoadError: Package InducingPoints errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 481.11s: package tests unexpectedly errored