Package evaluation of Impute on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T19:35:10.775 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.27s ################################################################################ # Installation # Installing Impute... Resolving package versions... Installed IrrationalConstants ───────── v0.2.4 Installed PtrArrays ─────────────────── v1.3.0 Installed TableTraits ───────────────── v1.0.1 Installed LoggingExtras ─────────────── v1.1.0 Installed IterTools ─────────────────── v1.10.0 Installed Scratch ───────────────────── v1.2.1 Installed Preferences ───────────────── v1.4.3 Installed OpenSSL_jll ───────────────── v3.0.16+0 Installed BitFlags ──────────────────── v0.1.9 Installed SimpleBufferStream ────────── v1.2.0 Installed Parsers ───────────────────── v2.8.1 Installed DataDeps ──────────────────── v0.7.13 Installed SentinelArrays ────────────── v1.4.8 Installed Impute ────────────────────── v0.6.12 Installed PooledArrays ──────────────── v1.4.3 Installed DataAPI ───────────────────── v1.16.0 Installed Tables ────────────────────── v1.12.0 Installed InlineStrings ─────────────── v1.4.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed JLLWrappers ───────────────── v1.7.0 Installed StaticArrays ──────────────── v1.9.13 Installed StaticArraysCore ──────────── v1.4.3 Installed TableOperations ───────────── v1.2.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed NearestNeighbors ──────────── v0.4.21 Installed PrecompileTools ───────────── v1.2.1 Installed URIs ──────────────────────── v1.5.1 Installed DataValueInterfaces ───────── v1.0.0 Installed WorkerUtilities ───────────── v1.6.1 Installed OrderedCollections ────────── v1.8.0 Installed OpenSSL ───────────────────── v1.4.3 Installed TranscodingStreams ────────── v0.11.3 Installed FilePathsBase ─────────────── v0.9.24 Installed Reexport ──────────────────── v1.2.2 Installed MbedTLS ───────────────────── v1.1.9 Installed Statistics ────────────────── v1.11.1 Installed HTTP ──────────────────────── v1.10.15 Installed WeakRefStrings ────────────── v1.4.2 Installed AliasTables ───────────────── v1.1.3 Installed LogExpFunctions ───────────── v0.3.29 Installed StatsAPI ──────────────────── v1.7.0 Installed DataStructures ────────────── v0.18.22 Installed BSON ──────────────────────── v0.3.9 Installed Compat ────────────────────── v4.16.0 Installed Distances ─────────────────── v0.10.12 Installed CodecZlib ─────────────────── v0.7.8 Installed Missings ──────────────────── v1.2.0 Installed NamedDims ─────────────────── v1.2.2 Installed SortingAlgorithms ─────────── v1.2.1 Installed StatsBase ─────────────────── v0.34.4 Installed DocStringExtensions ───────── v0.9.3 Installed ExceptionUnwrapping ───────── v0.1.11 Installed CSV ───────────────────────── v0.10.15 Installing 1 artifacts Installed artifact OpenSSL 3.0 MiB Updating `~/.julia/environments/v1.12/Project.toml` [f7bf1975] + Impute v0.6.12 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [fbb218c0] + BSON v0.3.9 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.3 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [cd3eb016] + HTTP v1.10.15 [f7bf1975] + Impute v0.6.12 [842dd82b] + InlineStrings v1.4.3 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [356022a1] + NamedDims v1.2.2 [b8a86587] + NearestNeighbors v0.4.21 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.5.1 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [458c3c95] + OpenSSL_jll v3.0.16+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Installation completed after 7.74s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5823.6 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 585.32s ################################################################################ # Testing # Testing Impute Status `/tmp/jl_PERqo1/Project.toml` [39de3d68] AxisArrays v0.4.7 [94b1ba4f] AxisKeys v0.2.15 [fbb218c0] BSON v0.3.9 [336ed68f] CSV v0.10.15 [861a8166] Combinatorics v1.0.2 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [b4f34e82] Distances v0.10.12 [e30172f5] Documenter v1.9.0 [09f84164] HypothesisTests v0.11.3 [f7bf1975] Impute v0.6.12 [c8e1da08] IterTools v1.10.0 [e1d29d7a] Missings v1.2.0 [356022a1] NamedDims v1.2.2 [b8a86587] NearestNeighbors v0.4.21 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.12.0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_PERqo1/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [66dad0bd] AliasTables v1.1.3 [39de3d68] AxisArrays v0.4.7 [94b1ba4f] AxisKeys v0.2.15 [fbb218c0] BSON v0.3.9 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [e30172f5] Documenter v1.9.0 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [d7ba0133] Git v1.3.1 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.3 [b5f81e59] IOCapture v0.2.5 [f7bf1975] Impute v0.6.12 [842dd82b] InlineStrings v1.4.3 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [356022a1] NamedDims v1.2.2 [b8a86587] NearestNeighbors v0.4.21 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.6 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [892a3eda] StringManipulation v0.4.1 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.47.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [efcefdf7] PCRE2_jll v10.44.0+0 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Testing Running tests... ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at validators.jl:3 └ @ Core ~/.julia/packages/Impute/ax0FI/test/validators.jl:3 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at validators.jl:3 └ @ Core ~/.julia/packages/Impute/ax0FI/test/validators.jl:3 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at validators.jl:3 └ @ Core ~/.julia/packages/Impute/ax0FI/test/validators.jl:3 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at validators.jl:3 └ @ Core ~/.julia/packages/Impute/ax0FI/test/validators.jl:3 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at validators.jl:3 └ @ Core ~/.julia/packages/Impute/ax0FI/test/validators.jl:3 Chaining and Piping: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/chain.jl:1 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/chain.jl:4 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/chain.jl:4 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [14] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [16] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:56 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:485 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [21] _start() @ Base ./client.jl:558 data: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/data.jl:1 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] datasets() @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:15 [10] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/data.jl:2 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [12] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/data.jl:2 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [14] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [16] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:57 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:485 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [21] _start() @ Base ./client.jl:558 Matrix: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/deprecated.jl:58 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:35 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [14] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:59 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [16] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:59 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [18] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [20] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:58 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [25] _start() @ Base ./client.jl:558 Chain: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/deprecated.jl:255 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:256 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [14] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:256 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [16] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [18] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:58 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:485 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [23] _start() @ Base ./client.jl:558 ┌ Warning: interpolate! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: knn! did not mutate input data of type Matrix └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:188 ┌ Warning: knn! did not mutate input data of type AxisArray └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:378 [ Info: knn! did not mutate input data of type NamedDimsArray [ Info: knn! did not mutate input data of type KeyedArray Iris: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/imputors/knn.jl:11 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/imputors/knn.jl:2 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/imputors/knn.jl:15 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [14] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/imputors/knn.jl:15 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [16] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [18] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:61 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:485 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [23] _start() @ Base ./client.jl:558 ┌ Warning: locf! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: nocb! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: replace! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: srs! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: substitute! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at substitute.jl:114 └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:114 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at substitute.jl:114 └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:114 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at substitute.jl:114 └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:114 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at substitute.jl:114 └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:114 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at substitute.jl:114 └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:114 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = top-level scope at substitute.jl:114 └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:114 ┌ Warning: mean_and_std will default to corrected=true in the future. Use corrected=false for previous behaviour. │ caller = top-level scope at substitute.jl:114 └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:114 ┌ Warning: mean_and_std will default to corrected=true in the future. Use corrected=false for previous behaviour. │ caller = #204 at substitute.jl:223 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:223 ┌ Warning: Impute.Fill is deprecated in favour of Impute.Replace for constants and Impute.Substitute for calculating summary statistics over non-missing data. │ caller = #Fill#53 at deprecated.jl:46 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/src/deprecated.jl:46 Data mismatch - too few variables: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/imputors/svd.jl:96 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/imputors/svd.jl:2 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/imputors/svd.jl:97 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [14] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/imputors/svd.jl:97 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [16] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [18] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:67 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:485 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [23] _start() @ Base ./client.jl:558 Test Summary: | Pass Error Broken Total Time Impute | 662 6 9 677 6m25.7s Validators | 27 27 21.2s DeclareMissings | 21 21 17.7s Chaining and Piping | 1 1 15.8s data | 1 1 0.6s deprecated | 97 2 9 108 45.5s Default colwise | 4 4 3.0s Fill | 10 1 11 4.8s Value | 4 4 1.7s Mean | 6 6 2.3s Matrix | 1 1 0.7s Drop | 75 9 84 34.3s Chain | 1 1 0.7s utils | 8 8 2.7s Filter | 51 51 7.7s Interpolate | 93 93 52.1s KNN | 32 1 33 1m09.7s Default | 29 29 46.5s Iris | 1 1 0.7s Data match | 3 3 22.5s LOCF | 71 71 20.4s NOCB | 71 71 19.5s Replace | 56 56 21.7s SRS | 37 37 11.7s Substitute | 76 76 35.0s WeightedSubstitute | 12 12 13.8s SVD | 14 1 15 24.6s Default | 12 12 20.4s Data match | 1 1 2.4s Data mismatch - too few variables | 1 1 0.7s Data mismatch - poor low rank approximations | 1 1 1.1s Utilities | 4 4 1.5s ERROR: LoadError: Some tests did not pass: 662 passed, 0 failed, 6 errored, 9 broken. in expression starting at /home/pkgeval/.julia/packages/Impute/ax0FI/test/runtests.jl:51 Testing failed after 422.08s ERROR: LoadError: Package Impute errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1047.18s: package tests unexpectedly errored