Package evaluation of HITRAN on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T21:14:57.679 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.32s ################################################################################ # Installation # Installing HITRAN... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [4efdbe67] + HITRAN v0.2.15 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 ⌅ [79e6a3ab] + Adapt v3.7.2 ⌅ [4fba245c] + ArrayInterface v6.0.25 [30b0a656] + ArrayInterfaceCore v0.1.29 [015c0d05] + ArrayInterfaceOffsetArrays v0.1.7 [b0d46f97] + ArrayInterfaceStaticArrays v0.1.5 [dd5226c6] + ArrayInterfaceStaticArraysCore v0.1.4 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [2a0fbf3d] + CPUSummary v0.1.30 [336ed68f] + CSV v0.10.15 ⌃ [fb6a15b2] + CloseOpenIntervals v0.1.11 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.3 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [4efdbe67] + HITRAN v0.2.15 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [10f19ff3] + LayoutPointers v0.1.13 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 ⌅ [f517fe37] + Polyester v0.6.20 ⌅ [1d0040c9] + PolyesterWeave v0.1.13 [f27b6e38] + Polynomials v4.0.19 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [0aa819cd] + SQLite v1.6.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 ⌅ [aedffcd0] + Static v0.8.10 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 ⌅ [7792a7ef] + StrideArraysCore v0.4.7 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.2 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [f5851436] + FFTW_jll v3.3.10+3 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [76ed43ae] + SQLite_jll v3.48.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 2.73s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 321.25s ################################################################################ # Testing # Testing HITRAN Status `/tmp/jl_z7NKjh/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [717857b8] DSP v0.7.10 [a93c6f00] DataFrames v1.7.0 [5789e2e9] FileIO v1.17.0 [4efdbe67] HITRAN v0.2.15 ⌅ [033835bb] JLD2 v0.4.54 ⌅ [f517fe37] Polyester v0.6.20 [2dfb63ee] PooledArrays v1.4.3 [0aa819cd] SQLite v1.6.1 [276daf66] SpecialFunctions v2.5.0 [f43a241f] Downloads v1.6.0 [de0858da] Printf v1.11.0 [ea8e919c] SHA v0.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_z7NKjh/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 ⌅ [79e6a3ab] Adapt v3.7.2 ⌅ [4fba245c] ArrayInterface v6.0.25 [30b0a656] ArrayInterfaceCore v0.1.29 [015c0d05] ArrayInterfaceOffsetArrays v0.1.7 [b0d46f97] ArrayInterfaceStaticArrays v0.1.5 [dd5226c6] ArrayInterfaceStaticArraysCore v0.1.4 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [2a0fbf3d] CPUSummary v0.1.30 [336ed68f] CSV v0.10.15 ⌃ [fb6a15b2] CloseOpenIntervals v0.1.11 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [a10d1c49] DBInterface v2.6.1 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.3 [7a1cc6ca] FFTW v1.8.1 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [4efdbe67] HITRAN v0.2.15 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 ⌃ [10f19ff3] LayoutPointers v0.1.13 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [6fe1bfb0] OffsetArrays v1.16.0 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 ⌅ [f517fe37] Polyester v0.6.20 ⌅ [1d0040c9] PolyesterWeave v0.1.13 [f27b6e38] Polynomials v4.0.19 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [0aa819cd] SQLite v1.6.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 ⌅ [aedffcd0] Static v0.8.10 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 ⌅ [7792a7ef] StrideArraysCore v0.4.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [8290d209] ThreadingUtilities v0.5.2 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [f5851436] FFTW_jll v3.3.10+3 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [76ed43ae] SQLite_jll v3.48.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition boundscheck() in module StrideArraysCore at /home/pkgeval/.julia/packages/StrideArraysCore/lUhTe/src/ptr_array.jl:886 overwritten at /home/pkgeval/.julia/packages/StrideArraysCore/lUhTe/src/StrideArraysCore.jl:72. [ Info: No custom HITRAN database specified, opening 'HITRAN.sqlite' (default) 84 Database and absorption calculation: Error During Test at /home/pkgeval/.julia/packages/HITRAN/JdZi4/test/runtests.jl:11 Got exception outside of a @test SQLite.SQLiteException("attempt to write a readonly database") Stacktrace: [1] execute(db::SQLite.DB, stmt::SQLite.Stmt, params::@NamedTuple{}) @ SQLite ~/.julia/packages/SQLite/UqCGE/src/SQLite.jl:555 [2] execute(db::SQLite.DB, sql::String, params::@NamedTuple{}) @ SQLite ~/.julia/packages/SQLite/UqCGE/src/SQLite.jl:574 [3] #execute#9 @ ~/.julia/packages/SQLite/UqCGE/src/SQLite.jl:581 [inlined] [4] execute @ ~/.julia/packages/SQLite/UqCGE/src/SQLite.jl:580 [inlined] [5] #12 @ ~/.julia/packages/SQLite/UqCGE/src/SQLite.jl:709 [inlined] [6] transaction @ ~/.julia/packages/SQLite/UqCGE/src/SQLite.jl:666 [inlined] [7] drop!(db::SQLite.DB, table::String; ifexists::Bool) @ SQLite ~/.julia/packages/SQLite/UqCGE/src/SQLite.jl:708 [8] drop! @ ~/.julia/packages/SQLite/UqCGE/src/SQLite.jl:706 [inlined] [9] fetch!(db::SQLite.DB, name::String, global_ids::Vector{Int64}, ν_min::Int64, ν_max::Int64, parameters::Vector{String}; force::Bool) @ HITRAN ~/.julia/packages/HITRAN/JdZi4/src/database.jl:78 [10] fetch!(db::SQLite.DB, name::String, global_ids::Vector{Int64}, ν_min::Int64, ν_max::Int64, parameters::Vector{Symbol}; force::Bool) @ HITRAN ~/.julia/packages/HITRAN/JdZi4/src/database.jl:124 [11] fetch! @ ~/.julia/packages/HITRAN/JdZi4/src/database.jl:112 [inlined] [12] #fetch!#8 @ ~/.julia/packages/HITRAN/JdZi4/src/database.jl:133 [inlined] [13] fetch!(name::String, global_ids::Vector{Int64}, ν_min::Int64, ν_max::Int64, parameters::Vector{Symbol}) @ HITRAN ~/.julia/packages/HITRAN/JdZi4/src/database.jl:127 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:921 [inlined] [15] macro expansion @ ~/.julia/packages/HITRAN/JdZi4/test/runtests.jl:12 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [17] macro expansion @ ~/.julia/packages/HITRAN/JdZi4/test/runtests.jl:12 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [19] top-level scope @ ~/.julia/packages/HITRAN/JdZi4/test/runtests.jl:5 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:485 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [24] _start() @ Base ./client.jl:558 Test Summary: | Pass Error Total Time HITRAN.jl | 147 1 148 2m09.7s Total internal partition sums | 133 133 1m10.5s Database and absorption calculation | 1 1 53.7s Instrument functions | 7 7 4.8s Environments | 5 5 0.7s Utility | 2 2 0.0s ERROR: LoadError: Some tests did not pass: 147 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/HITRAN/JdZi4/test/runtests.jl:4 Testing failed after 167.04s ERROR: LoadError: Package HITRAN errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 527.15s: package tests unexpectedly errored