Package evaluation of GaussianProcesses on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T20:15:07.502 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.19s ################################################################################ # Installation # Installing GaussianProcesses... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [891a1506] + GaussianProcesses v0.12.5 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [d360d2e6] + ChainRulesCore v1.25.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.48 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [fdbdab4c] + ElasticArrays v1.2.12 [2904ab23] + ElasticPDMats v0.2.3 ⌅ [442a2c76] + FastGaussQuadrature v0.4.9 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v0.10.38 [891a1506] + GaussianProcesses v0.12.5 [3587e190] + InverseFunctions v0.1.17 ⌅ [92d709cd] + IrrationalConstants v0.1.1 [692b3bcd] + JLLWrappers v1.7.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.0 [77ba4419] + NaNMath v1.1.2 [429524aa] + Optim v1.11.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [79098fc4] + Rmath v0.7.1 [6e75b9c4] + ScikitLearnBase v0.5.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 ⌅ [4c63d2b9] + StatsFuns v0.9.18 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] + Rmath_jll v0.4.3+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.34s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 86.61s ################################################################################ # Testing # Testing GaussianProcesses Status `/tmp/jl_IGqU0T/Project.toml` [49dc2e85] Calculus v0.5.2 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [fdbdab4c] ElasticArrays v1.2.12 [2904ab23] ElasticPDMats v0.2.3 ⌅ [442a2c76] FastGaussQuadrature v0.4.9 [f6369f11] ForwardDiff v0.10.38 [891a1506] GaussianProcesses v0.12.5 [429524aa] Optim v1.11.0 [90014a1f] PDMats v0.11.32 [92933f4c] ProgressMeter v1.10.2 [3cdcf5f2] RecipesBase v1.3.4 [6e75b9c4] ScikitLearnBase v0.5.0 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [10745b16] Statistics v1.11.1 ⌅ [4c63d2b9] StatsFuns v0.9.18 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_IGqU0T/Manifest.toml` [47edcb42] ADTypes v1.14.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [49dc2e85] Calculus v0.5.2 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.48 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [fdbdab4c] ElasticArrays v1.2.12 [2904ab23] ElasticPDMats v0.2.3 ⌅ [442a2c76] FastGaussQuadrature v0.4.9 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v0.10.38 [891a1506] GaussianProcesses v0.12.5 [3587e190] InverseFunctions v0.1.17 ⌅ [92d709cd] IrrationalConstants v0.1.1 [692b3bcd] JLLWrappers v1.7.0 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.9.0 [77ba4419] NaNMath v1.1.2 [429524aa] Optim v1.11.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [d96e819e] Parameters v0.12.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 ⌅ [79098fc4] Rmath v0.7.1 [6e75b9c4] ScikitLearnBase v0.5.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 ⌅ [4c63d2b9] StatsFuns v0.9.18 [3a884ed6] UnPack v1.0.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] Rmath_jll v0.4.3+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [8e850b90] libblastrampoline_jll v5.11.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Utils | 1 1 4.4s 29.427182 seconds (14.20 M allocations: 836.594 MiB, 2.03% gc time, 55.38% compilation time: 11% of which was recompilation) Test Summary: | Pass Total Time GP | 5 5 21.4s 21.830934 seconds (6.20 M allocations: 313.922 MiB, 0.57% gc time, 99.62% compilation time: <1% of which was recompilation) Testing MeanZero... Testing MeanConst... Testing MeanLin... Testing MeanPoly... Testing MeanPeriodic... Observation #2: Test Failed at /home/pkgeval/.julia/packages/GaussianProcesses/dOato/test/means.jl:50 Expression: ≈(theor_grad, num_grad, rtol = 1.0e-5, atol = 1.0e-5) Evaluated: [-0.5918859580342372, 0.825170149281536, 0.9451568428395598, 0.7039301067840997, 0.8060217197333415, 0.5648842578216245, 0.3266168128458112, -0.7102692480763375, -3.2390075154258784, -0.18589393339392354, 8.91491064982429, -1.2232169894453528] ≈ [-0.5918859580315244, 0.8251701492819554, 0.9451568428371511, 0.7039064797536203, 0.8060217197310169, 0.5648842578363397, 0.3266168128373443, -0.7102926634683854, -3.239007515330688, -0.18589393341140056, 8.914910615225352, -1.2229730237433418] (rtol=1.0e-5, atol=1.0e-5) Stacktrace: [1] top-level scope @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:23 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1813 [inlined] [5] macro expansion @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:43 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [7] macro expansion @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:43 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1813 [inlined] [9] macro expansion @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:50 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] Observation #3: Test Failed at /home/pkgeval/.julia/packages/GaussianProcesses/dOato/test/means.jl:50 Expression: ≈(theor_grad, num_grad, rtol = 1.0e-5, atol = 1.0e-5) Evaluated: [0.7263014412077748, -0.7801941363167271, -0.4777187310256596, 0.842450139869483, 0.6873763281489327, 0.6255374566378868, -0.8785128422665394, -0.5387743143783753, -0.39191949050896724, -1.4681862968233073, -11.517506052131944, -2.8623272145147785] ≈ [0.7263014411898127, -0.7801941363186452, -0.4777187310120942, 0.8424314967004422, 0.6873763281430367, 0.6255374566157481, -0.8785128422760774, -0.5388034645051678, -0.39191949054847536, -1.4681862967058088, -11.517506033565834, -2.8620697807323676] (rtol=1.0e-5, atol=1.0e-5) Stacktrace: [1] top-level scope @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:23 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1813 [inlined] [5] macro expansion @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:43 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [7] macro expansion @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:43 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1813 [inlined] [9] macro expansion @ ~/.julia/packages/GaussianProcesses/dOato/test/means.jl:50 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] Testing ProdMean... [31] signal 11 (128): Segmentation fault in expression starting at /home/pkgeval/.julia/packages/GaussianProcesses/dOato/test/means.jl:7 set_params! at /home/pkgeval/.julia/packages/GaussianProcesses/dOato/src/common.jl:113 unknown function (ip: 0x73c7f010d8c6) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_eval_module_expr at /source/src/toplevel.c:231 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:866 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 [inlined] macro expansion at ./timing.jl:611 [inlined] top-level scope at /home/pkgeval/.julia/packages/GaussianProcesses/dOato/test/runtests.jl:4 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_invoke at /source/src/gf.c:3366 jl_toplevel_eval_flex at /source/src/toplevel.c:1059 jl_eval_module_expr at /source/src/toplevel.c:231 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:866 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 exec_options at ./client.jl:295 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x73c80d0a0249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 28647471 (Pool: 28646944; Big: 527); GC: 26 Testing failed after 78.18s ERROR: LoadError: Package GaussianProcesses errored during testing (received signal: 11) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 194.5s: a segmentation fault happened