Package evaluation of FishersExactTest on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T13:20:54.201 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.44s ################################################################################ # Installation # Installing FishersExactTest... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [bb7b2d4f] + FishersExactTest v1.2.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [ffbed154] + DocStringExtensions v0.9.3 [bb7b2d4f] + FishersExactTest v1.2.0 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [21216c6a] + Preferences v1.4.3 [276daf66] + SpecialFunctions v2.5.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [8e850b90] + libblastrampoline_jll v5.11.2+0 Installation completed after 1.74s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 18.57s ################################################################################ # Testing # Testing FishersExactTest Status `/tmp/jl_J8YnzJ/Project.toml` [bb7b2d4f] FishersExactTest v1.2.0 [276daf66] SpecialFunctions v2.5.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_J8YnzJ/Manifest.toml` [ffbed154] DocStringExtensions v0.9.3 [bb7b2d4f] FishersExactTest v1.2.0 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [21216c6a] Preferences v1.4.3 [276daf66] SpecialFunctions v2.5.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [8e850b90] libblastrampoline_jll v5.11.2+0 Testing Running tests... lbinom: Error During Test at /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:12 Test threw exception Expression: lbinom_cref(n, k) ≈ lbinom(n, k) could not load library "/home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so" /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so: cannot open shared object file: No such file or directory Stacktrace: [1] lbinom_cref(n::Int64, k::Int64) @ Main ~/.julia/packages/FishersExactTest/ZKR9b/test/cref/fet_cref.jl:64 [2] top-level scope @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:9 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [4] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:10 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [6] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:12 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] hypergeo: Error During Test at /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:18 Test threw exception Expression: hypergeo_cref(n11, n1_, n_1, n) ≈ hypergeo(n11, n1_, n_1, n) could not load library "/home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so" /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so: cannot open shared object file: No such file or directory Stacktrace: [1] hypergeo_cref(n11::Int64, n1_::Int64, n_1::Int64, n::Int64) @ Main ~/.julia/packages/FishersExactTest/ZKR9b/test/cref/fet_cref.jl:71 [2] top-level scope @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:9 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [4] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:16 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [6] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:18 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] hypergeo: Error During Test at /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:21 Test threw exception Expression: hypergeo_cref(n11, n1_, n_1, n) ≈ hypergeo(n11, n1_, n_1, n) could not load library "/home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so" /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so: cannot open shared object file: No such file or directory Stacktrace: [1] hypergeo_cref(n11::Int64, n1_::Int64, n_1::Int64, n::Int64) @ Main ~/.julia/packages/FishersExactTest/ZKR9b/test/cref/fet_cref.jl:71 [2] top-level scope @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:9 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [4] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:16 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [6] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:21 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] kt_fisher_exact: Error During Test at /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:41 Test threw exception Expression: (kt_fisher_exact_cref(1656, 32106, 17466, 251573))[4] ≈ 1.825331208626037 * 10 ^ -31 could not load library "/home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so" /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so: cannot open shared object file: No such file or directory Stacktrace: [1] kt_fisher_exact_cref(n11::Int64, n12::Int64, n21::Int64, n22::Int64) @ Main ~/.julia/packages/FishersExactTest/ZKR9b/test/cref/fet_cref.jl:88 [2] top-level scope @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:9 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [4] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:39 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [6] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:41 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] kt_fisher_exact: Error During Test at /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:42 Test threw exception Expression: (kt_fisher_exact_cref(3, 1, 1, 3))[4] ≈ 0.48571429 could not load library "/home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so" /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/cref/libkfunc.so: cannot open shared object file: No such file or directory Stacktrace: [1] kt_fisher_exact_cref(n11::Int64, n12::Int64, n21::Int64, n22::Int64) @ Main ~/.julia/packages/FishersExactTest/ZKR9b/test/cref/fet_cref.jl:88 [2] top-level scope @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:9 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [4] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:39 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [6] macro expansion @ ~/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:42 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] Test Summary: | Pass Error Total Time Fisher's Exact Test | 2 5 7 5.3s lbinom | 1 1 3.1s hypergeo | 2 2 1.0s kt_fisher_exact | 2 2 4 1.3s ERROR: LoadError: Some tests did not pass: 2 passed, 0 failed, 5 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/FishersExactTest/ZKR9b/test/runtests.jl:5 Testing failed after 15.19s ERROR: LoadError: Package FishersExactTest errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 59.42s: package requires a missing binary dependency