Package evaluation of EvoDynamics on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T23:22:40.676 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.02s ################################################################################ # Installation # Installing EvoDynamics... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [c8768967] + EvoDynamics v0.17.0 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [46ada45e] + Agents v5.17.2 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] + ArrayTools v0.2.7 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [c8768967] + EvoDynamics v0.17.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [86223c79] + Graphs v1.12.0 [cd3eb016] + HTTP v1.10.15 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [d1922b25] + LightOSM v0.2.11 [9c8b4983] + LightXML v0.9.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.15 [739be429] + MbedTLS v1.1.9 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.21 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 ⌅ [30b38841] + QuickHeaps v0.1.2 [e6cf234a] + RandomNumbers v1.6.0 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6038ab10] + Rotations v1.7.1 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.1 [d4ead438] + SpatialIndexing v0.1.6 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [4c8beaf5] + StaticGraphs v0.3.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.3.2 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.5.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.13 [94ce4f54] + Libiconv_jll v1.18.0+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.54s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 213.18s ################################################################################ # Testing # Testing EvoDynamics Status `/tmp/jl_kJxTZt/Project.toml` ⌅ [46ada45e] Agents v5.17.2 [31c24e10] Distributions v0.25.118 [c8768967] EvoDynamics v0.17.0 [e6cf234a] RandomNumbers v1.6.0 [90137ffa] StaticArrays v1.9.13 ⌅ [2913bbd2] StatsBase v0.33.21 [ddb6d928] YAML v0.4.13 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_kJxTZt/Manifest.toml` ⌅ [46ada45e] Agents v5.17.2 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] ArrayTools v0.2.7 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [c8768967] EvoDynamics v0.17.0 [460bff9d] ExceptionUnwrapping v0.1.11 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [86223c79] Graphs v1.12.0 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [d1922b25] LightOSM v0.2.11 [9c8b4983] LightXML v0.9.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [739be429] MbedTLS v1.1.9 ⌅ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.21 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 ⌅ [30b38841] QuickHeaps v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6038ab10] Rotations v1.7.1 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [d4ead438] SpatialIndexing v0.1.6 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [4c8beaf5] StaticGraphs v0.3.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.3.2 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.13 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [02c8fc9c] XML2_jll v2.13.6+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent!(agent::EvoDynamics.Ind{Float64, StaticArraysCore.MArray{S, Float64, 2} where S<:Tuple, StaticArraysCore.MArray{S, Bool, 2} where S<:Tuple, StaticArraysCore.MArray{S, Float64, 1} where S<:Tuple}, model::Agents.StandardABM{Agents.GridSpace{2, false}, EvoDynamics.Ind{Float64, StaticArraysCore.MArray{S, Float64, 2} where S<:Tuple, StaticArraysCore.MArray{S, Bool, 2} where S<:Tuple, StaticArraysCore.MArray{S, Float64, 1} where S<:Tuple}, typeof(Agents.Schedulers.randomly), EvoDynamics.Params{Float64, Int64, String}, RandomNumbers.Xorshifts.Xoroshiro128Plus}) at simulation.jl:247 └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 Test Summary: | Pass Total Time Basic functions | 10 10 31.8s WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time Mutation | 16 16 7.6s WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 ┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time Seeding | 2 2 48.8s WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time Interactions | 13 13 1.5s [ Info: Loading the parameters... WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). [ Info: Running the model... run! progress: 14%|█████▏ | ETA: 0:03:17┌ Warning: `kill_agent!` is deprecated, use `remove_agent!` instead. │ caller = remove_agent! at simulation.jl:247 [inlined] └ @ Core ~/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 run! progress: 21%|███████▊ | ETA: 0:04:13 run! progress: 29%|██████████▎ | ETA: 0:06:29 run! progress: 36%|████████████▉ | ETA: 0:06:30 run! progress: 43%|███████████████▍ | ETA: 0:06:48 run! progress: 50%|██████████████████ | ETA: 0:06:38 run! progress: 57%|████████████████████▋ | ETA: 0:06:10 run! progress: 64%|███████████████████████▏ | ETA: 0:05:22 run! progress: 71%|█████████████████████████▊ | ETA: 0:04:32 run! progress: 79%|████████████████████████████▎ | ETA: 0:03:39 run! progress: 86%|██████████████████████████████▉ | ETA: 0:02:36 run! progress: 93%|█████████████████████████████████▍ | ETA: 0:01:24 run! progress: 100%|████████████████████████████████████| Time: 0:21:23 Test Summary: | Pass Total Time Model | 2 2 21m42.0s [ Info: Loading the parameters... WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). [ Info: Running the model... WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition env_resources(Int64) in module EvoDynamics at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/params.jl:4 overwritten on the same line (check for duplicate calls to `include`). ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 51 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_10endiannessE1ELb1EEEE25getSectionContentsAsArrayINS0_12Elf_Sym_ImplIS4_EEEENS_8ExpectedINS_8ArrayRefIT_EEEERKNS0_13Elf_Shdr_ImplIS4_EE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_10endiannessE1ELb1EEEE14getSymbolFlagsENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZNK4llvm6object10ObjectFile14getSymbolValueENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_10endiannessE1ELb1EEEE16getSymbolAddressENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) getAddress at /source/usr/include/llvm/Object/ObjectFile.h:464 [inlined] get_function_name_and_base at /source/src/debuginfo.cpp:734 [inlined] jl_dylib_DI_for_fptr at /source/src/debuginfo.cpp:1130 jl_getDylibFunctionInfo at /source/src/debuginfo.cpp:1162 [inlined] jl_getFunctionInfo_impl at /source/src/debuginfo.cpp:1257 ijl_lookup_code_address at /source/src/stackwalk.c:608 lookup at ./stacktraces.jl:109 firstcaller at ./deprecated.jl:295 [inlined] firstcaller at ./deprecated.jl:290 [inlined] macro expansion at ./deprecated.jl:270 [inlined] macro expansion at ./logging/logging.jl:399 [inlined] _depwarn at ./deprecated.jl:265 jfptr__depwarn_108532.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] jl_f__call_latest at /source/src/builtins.c:883 #invokelatest#1 at ./essentials.jl:1056 [inlined] invokelatest at ./essentials.jl:1052 [inlined] #depwarn#937 at ./deprecated.jl:256 [inlined] depwarn at ./deprecated.jl:251 [inlined] #kill_agent!#243 at ./deprecated.jl:225 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_apply at /source/src/builtins.c:839 kill_agent! at ./deprecated.jl:223 remove_agent! at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:247 [inlined] agent_step! at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/src/simulation.jl:220 activate_agents at /home/pkgeval/.julia/packages/Agents/06AXy/src/simulations/step.jl:49 unknown function (ip: 0x79358cb55e3d) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 step! at /home/pkgeval/.julia/packages/Agents/06AXy/src/simulations/step.jl:38 #run!#154 at /home/pkgeval/.julia/packages/Agents/06AXy/src/simulations/collect.jl:151 unknown function (ip: 0x79358cbc7c8f) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 run! at /home/pkgeval/.julia/packages/Agents/06AXy/src/simulations/collect.jl:114 #series_ensemble#232 at /home/pkgeval/.julia/packages/Agents/06AXy/src/simulations/ensemblerun.jl:74 series_ensemble at /home/pkgeval/.julia/packages/Agents/06AXy/src/simulations/ensemblerun.jl:66 [inlined] #ensemblerun!#227 at /home/pkgeval/.julia/packages/Agents/06AXy/src/simulations/ensemblerun.jl:43 [inlined] ensemblerun! at /home/pkgeval/.julia/packages/Agents/06AXy/src/simulations/ensemblerun.jl:30 unknown function (ip: 0x79358cbffec6) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #runmodel#35 at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/src/api.jl:84 runmodel at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/src/api.jl:51 unknown function (ip: 0x79358cbe8506) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 exec_options at ./client.jl:295 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7935a952b249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_97191.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2377 unknown function (ip: 0x77b00c583ca3) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #201 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2317 withenv at ./env.jl:265 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2138 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1996 #182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2105 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x77b00c5701fc) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#178 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2052 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2044 unknown function (ip: 0x77b00c56d329) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2302 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:460 unknown function (ip: 0x77b00c56cf61) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 unknown function (ip: 0x77b00c563d38) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:148 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 unknown function (ip: 0x77b00c561cff) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:300 exec_options at ./client.jl:329 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x77b00e44a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000077b000200010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:558 _start() ╎ 1 @Base/client.jl:329 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:300 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2906 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2846 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:485 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:146 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:147 test ╎ ╎ 1 @Pkg/src/API.jl:147 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:148 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159 test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2214 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2302 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2044 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2052 #sandbox#178 ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#18… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2105 (::Pkg.Operations.var"#182#183"… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:1996 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2138 (::Pkg.Operations.var"#186#187… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265 withenv(::Pkg.Operations.var"#201… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2317 (::Pkg.Operations.var"#201#20… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2377 subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:694 wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:141 wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1199 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1187 poptask(W::Base.Intrusiv… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 [51] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/api_tests.jl:7 _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_10endiannessE1ELb1EEEE25getSectionContentsAsArrayINS0_12Elf_Sym_ImplIS4_EEEENS_8ExpectedINS_8ArrayRefIT_EEEERKNS0_13Elf_Shdr_ImplIS4_EE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) unknown function (ip: 0x7fff52744a0f) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 78946776 (Pool: 78945924; Big: 852); GC: 133 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:326 #start_profile_listener##0 at ./Base.jl:346 jfptr_YY.start_profile_listenerYY.YY.0_111230.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 21921760 (Pool: 21921163; Big: 597); GC: 20 PkgEval terminated after 2722.97s: test duration exceeded the time limit