Package evaluation of ElectroPhysiology on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T02:01:47.823 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.13s ################################################################################ # Installation # Installing ElectroPhysiology... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [da7a9670] + ElectroPhysiology v0.5.34 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [aafaddc9] + CatIndices v0.2.2 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 ⌃ [35d6a980] + ColorSchemes v3.26.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [c3611d14] + ColorVectorSpace v0.9.10 ⌅ [5ae59095] + Colors v0.12.11 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.5.8 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [5a033b19] + CurveFit v0.6.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.3 [da7a9670] + ElectroPhysiology v0.5.34 [e2ba6199] + ExprTools v0.1.10 [4f61f5a4] + FFTViews v0.3.2 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 [53c48c17] + FixedPointNumbers v0.8.5 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.12.0 [2c695a8d] + HistogramThresholding v0.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 ⌃ [2803e5a7] + ImageAxes v0.6.11 ⌃ [c817782e] + ImageBase v0.1.5 [cbc4b850] + ImageBinarization v0.3.1 [f332f351] + ImageContrastAdjustment v0.3.12 ⌅ [a09fc81d] + ImageCore v0.9.4 [89d5987c] + ImageCorners v0.1.3 [51556ac3] + ImageDistances v0.2.17 ⌃ [6a3955dd] + ImageFiltering v0.7.6 ⌃ [82e4d734] + ImageIO v0.6.8 ⌃ [6218d12a] + ImageMagick v1.2.1 ⌃ [bc367c6b] + ImageMetadata v0.9.9 [787d08f9] + ImageMorphology v0.4.5 [2996bd0c] + ImageQualityIndexes v0.3.7 ⌃ [80713f31] + ImageSegmentation v1.8.1 [4e3cecfd] + ImageShow v0.3.8 [02fcd773] + ImageTransformations v0.10.1 ⌃ [916415d5] + Images v0.26.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [1d092043] + IntegralArrays v0.1.6 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.10 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [b835a17e] + JpegTurbo v0.1.6 [10f19ff3] + LayoutPointers v0.1.17 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.171 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [e94cdb99] + MosaicViews v0.3.4 [77ba4419] + NaNMath v1.1.2 [b8a86587] + NearestNeighbors v0.4.21 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.16.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.0 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [1d0040c9] + PolyesterWeave v0.2.2 [f27b6e38] + Polynomials v4.0.19 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [94ee1d12] + Quaternions v0.7.6 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [dee08c22] + RegionTrees v0.3.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [6c6a2e73] + Scratch v1.2.1 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [45858cf5] + Sixel v0.1.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [cae243ae] + StackViews v0.1.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [dc5dba14] + TZJData v1.4.0+2025a [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.2 ⌅ [731e570b] + TiffImages v0.10.2 [06e1c1a7] + TiledIteration v0.5.0 [f269a46b] + TimeZones v1.21.3 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.71 [efce3f68] + WoodburyMatrices v1.0.0 [f5851436] + FFTW_jll v3.3.10+3 [61579ee1] + Ghostscript_jll v9.55.0+4 ⌅ [c73af94c] + ImageMagick_jll v6.9.13+0 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [88015f11] + LERC_jll v4.0.1+0 [89763e89] + Libtiff_jll v4.7.1+0 [d3a379c0] + LittleCMS_jll v2.16.0+0 [856f044c] + MKL_jll v2025.0.1+1 [18a262bb] + OpenEXR_jll v3.2.4+0 [643b3616] + OpenJpeg_jll v2.5.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [b53b4c65] + libpng_jll v1.6.47+0 [075b6546] + libsixel_jll v1.10.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 3.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ MethodError: no method matching prune_manifest(::Pkg.Types.Manifest, ::Vector{UUID}) │ The function `prune_manifest` exists, but no method is defined for this combination of argument types. │ │ Closest candidates are: │ prune_manifest(::Pkg.Types.Manifest, !Matched::Set{UUID}) │ @ Pkg /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1176 │ prune_manifest(!Matched::Pkg.Types.EnvCache) │ @ Pkg /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1155 │ │ Stacktrace: │ [1] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:40 │ [2] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:9 │ [3] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:300 │ [5] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:329 │ [6] _start() │ @ Base ./client.jl:558 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 662170.5 ms ✓ Images 67202.7 ms ✓ ElectroPhysiology 2 dependencies successfully precompiled in 739 seconds. 219 already precompiled. Precompilation completed after 748.06s ################################################################################ # Testing # Testing ElectroPhysiology Status `/tmp/jl_Azhdkd/Project.toml` ⌃ [864edb3b] DataStructures v0.18.20 ⌃ [da7a9670] ElectroPhysiology v0.5.30 ⌃ [e9467ef8] GLMakie v0.11.2 [c817782e] ImageBase v0.1.7 [787d08f9] ImageMorphology v0.4.5 [4e3cecfd] ImageShow v0.3.8 [23992714] MAT v0.10.7 ⌃ [6fe1bfb0] OffsetArrays v1.15.0 [69cbc4a0] PhysiologyAnalysis v0.6.31 [d5a2a81f] PhysiologyPlotting v0.1.16 [b0e4dd01] RollingFunctions v0.8.1 `https://github.com/JeffreySarnoff/RollingFunctions.jl.git#main` [2913bbd2] StatsBase v0.34.4 [5e47fb64] TestImages v1.9.0 ⌃ [f269a46b] TimeZones v1.21.2 [8dfed614] Test v1.11.0 Status `/tmp/jl_Azhdkd/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 ⌃ [7d9f7c33] Accessors v0.1.41 ⌃ [79e6a3ab] Adapt v4.2.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [aafaddc9] CatIndices v0.2.2 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.0 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [adafc99b] CpuId v0.3.1 [5a033b19] CurveFit v0.6.1 [dc8bdbbb] CustomUnitRanges v1.0.2 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 ⌃ [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 ⌃ [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 ⌃ [da7a9670] ElectroPhysiology v0.5.30 [4e289a0a] EnumX v1.0.4 [429591f6] ExactPredicates v2.2.8 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.5 [4f61f5a4] FFTViews v0.3.2 [7a1cc6ca] FFTW v1.8.1 ⌃ [5789e2e9] FileIO v1.16.6 ⌅ [8fc22ac5] FilePaths v0.8.3 ⌃ [48062228] FilePathsBase v0.9.23 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v0.10.38 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.6 [f7f18e0c] GLFW v3.4.3 ⌃ [e9467ef8] GLMakie v0.11.2 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [5c1252a2] GeometryBasics v0.5.5 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.12.0 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 [f67ccb44] HDF5 v0.17.2 [2c695a8d] HistogramThresholding v0.3.1 [3e5b6fbb] HostCPUFeatures v0.1.17 ⌃ [34004b35] HypergeometricFunctions v0.3.27 [09f84164] HypothesisTests v0.11.3 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [cbc4b850] ImageBinarization v0.3.1 [f332f351] ImageContrastAdjustment v0.3.12 [a09fc81d] ImageCore v0.10.5 [89d5987c] ImageCorners v0.1.3 [51556ac3] ImageDistances v0.2.17 [6a3955dd] ImageFiltering v0.7.9 [82e4d734] ImageIO v0.6.9 [6218d12a] ImageMagick v1.4.0 [bc367c6b] ImageMetadata v0.9.10 [787d08f9] ImageMorphology v0.4.5 [2996bd0c] ImageQualityIndexes v0.3.7 [80713f31] ImageSegmentation v1.8.4 [4e3cecfd] ImageShow v0.3.8 [02fcd773] ImageTransformations v0.10.1 [916415d5] Images v0.26.2 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 ⌃ [842dd82b] InlineStrings v1.4.2 [1d092043] IntegralArrays v0.1.6 [a98d9a8b] Interpolations v0.15.1 ⌃ [d1acc4aa] IntervalArithmetic v0.22.23 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌃ [033835bb] JLD2 v0.5.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 ⌃ [b835a17e] JpegTurbo v0.1.5 [8e2b3108] KahanSummation v0.3.1 [5ab0869b] KernelDensity v0.6.9 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.171 [2fda8390] LsqFit v0.15.0 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 ⌅ [ee78f7c6] Makie v0.22.1 ⌅ [20f20a25] MakieCore v0.9.0 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [0a4f8689] MathTeXEngine v0.6.2 ⌃ [7269a6da] MeshIO v0.5.2 [626554b9] MetaGraphs v0.8.0 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [66fc600b] ModernGL v1.1.8 [e94cdb99] MosaicViews v0.3.4 ⌃ [d41bc354] NLSolversBase v7.8.3 [77ba4419] NaNMath v1.1.2 [b8a86587] NearestNeighbors v0.4.21 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 ⌃ [6fe1bfb0] OffsetArrays v1.15.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 ⌃ [f57f5aa1] PNGFiles v0.4.3 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [18e31ff7] Peaks v0.5.3 [69cbc4a0] PhysiologyAnalysis v0.6.31 [d5a2a81f] PhysiologyPlotting v0.1.16 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.3 [1d0040c9] PolyesterWeave v0.2.2 [647866c9] PolygonOps v0.1.2 ⌃ [f27b6e38] Polynomials v4.0.17 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [dee08c22] RegionTrees v0.3.2 [05181044] RelocatableFolders v1.0.1 ⌃ [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 [b0e4dd01] RollingFunctions v0.8.1 `https://github.com/JeffreySarnoff/RollingFunctions.jl.git#main` ⌃ [f2b01f46] Roots v2.2.5 [6038ab10] Rotations v1.7.1 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 ⌃ [efcf1570] Setfield v1.1.1 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [699a6c99] SimpleTraits v0.9.4 ⌃ [47aef6b3] SimpleWeightedGraphs v1.4.0 [45858cf5] Sixel v0.1.3 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [860ef19b] StableRNGs v1.0.2 [cae243ae] StackViews v0.1.1 ⌃ [aedffcd0] Static 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Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.40.3+0 ⌅ [89763e89] Libtiff_jll v4.4.0+0 [38a345b3] Libuuid_jll v2.40.3+0 ⌃ [d3a379c0] LittleCMS_jll v2.12.0+0 [856f044c] MKL_jll v2025.0.1+1 ⌃ [7cb0a576] MPICH_jll v4.3.0+0 ⌃ [f1f71cc9] MPItrampoline_jll v5.5.2+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [e7412a2a] Ogg_jll v1.3.5+1 [18a262bb] OpenEXR_jll v3.2.4+0 ⌃ [643b3616] OpenJpeg_jll v2.4.0+0 ⌃ [fe0851c0] OpenMPI_jll v5.0.7+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.3.3+0 [36c8627f] Pango_jll v1.56.1+0 ⌅ [30392449] Pixman_jll v0.43.4+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.21.0+2 [2381bf8a] Wayland_protocols_jll v1.36.0+0 ⌃ [02c8fc9c] XML2_jll v2.13.6+0 [aed1982a] XSLT_jll v1.1.42+0 [4f6342f7] Xorg_libX11_jll v1.8.6+3 [0c0b7dd1] Xorg_libXau_jll v1.0.12+0 [935fb764] Xorg_libXcursor_jll v1.2.3+0 [a3789734] Xorg_libXdmcp_jll v1.1.5+0 [1082639a] Xorg_libXext_jll v1.3.6+3 [d091e8ba] Xorg_libXfixes_jll v6.0.0+0 [a51aa0fd] Xorg_libXi_jll v1.8.2+0 [d1454406] Xorg_libXinerama_jll v1.1.5+0 [ec84b674] Xorg_libXrandr_jll v1.5.4+0 [ea2f1a96] Xorg_libXrender_jll v0.9.11+1 [14d82f49] Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] Xorg_libxcb_jll v1.17.0+3 [cc61e674] Xorg_libxkbfile_jll v1.1.2+1 [35661453] Xorg_xkbcomp_jll v1.4.6+1 [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0 [c5fb5394] Xorg_xtrans_jll v1.5.1+0 ⌃ [3161d3a3] Zstd_jll v1.5.7+0 [9a68df92] isoband_jll v0.2.3+0 [477f73a3] libaec_jll v1.1.3+0 [a4ae2306] libaom_jll v3.11.0+0 [0ac62f75] libass_jll v0.15.2+0 [1183f4f0] libdecor_jll v0.2.2+0 [f638f0a6] libfdk_aac_jll v2.0.3+0 ⌃ [b53b4c65] libpng_jll v1.6.46+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.7+2 ⌃ [c5f90fcd] libwebp_jll v1.4.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [1270edf5] x264_jll v10164.0.1+0 ⌅ [dfaa095f] x265_jll v3.6.0+0 [d8fb68d0] xkbcommon_jll v1.4.1+2 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [efcefdf7] PCRE2_jll v10.44.0+0 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 1567.5 ms ✓ libsixel_jll 1401.4 ms ✓ Libtiff_jll 3834.6 ms ✓ ArnoldiMethod 4279.1 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 6271.2 ms ✓ CoordinateTransformations 1717.3 ms ✓ RegionTrees 4327.5 ms ✓ Rotations 35078.8 ms ✓ Polynomials 9941.9 ms ✓ PNGFiles 10549.9 ms ✓ ImageShow 127978.5 ms ✓ TiffImages 7357.9 ms ✓ TimeZones 12110.7 ms ✓ JpegTurbo 2968.4 ms ✓ XSLT_jll 4246.1 ms ✓ NearestNeighbors 2196.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 19739.5 ms ✓ CloseOpenIntervals 5232.2 ms ✓ HistogramThresholding 52465.0 ms ✓ ImageAxes 17169.9 ms ✓ Sixel 3997.1 ms ✓ LittleCMS_jll 12593.1 ms ✓ Graphs 4505.9 ms ✓ Interpolations 22442.1 ms ✓ Rotations → RotationsRecipesBaseExt 4044.1 ms ✓ CurveFit 3952.7 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 4442.4 ms ✓ Polynomials → PolynomialsFFTWExt 4733.1 ms ✓ TimeZones → TimeZonesRecipesBaseExt 1425.8 ms ✓ libwebp_jll 7792.8 ms ✓ Clustering 183899.5 ms ✓ ImageFiltering 105435.6 ms ✓ LoopVectorization 14041.8 ms ✓ ImageBinarization 30477.3 ms ✓ ImageMetadata 1331.0 ms ✓ OpenJpeg_jll 68049.8 ms ✓ MetaGraphs 5254.9 ms ✓ SimpleWeightedGraphs 30860.4 ms ✓ ImageTransformations 7455.2 ms ✓ DSP 15889.6 ms ✓ WebP 33887.2 ms ✓ ImageCorners 4668.4 ms ✓ LoopVectorization → SpecialFunctionsExt 21660.3 ms ✓ ImageMorphology 8785.7 ms ✓ Netpbm 4386.1 ms ✓ ImageMagick_jll 11033.3 ms ✓ ImageContrastAdjustment 10237.9 ms ✓ ImageDistances 220454.4 ms ✓ ImageSegmentation 15429.9 ms ✓ ImageMagick 29636.0 ms ✓ ImageQualityIndexes 95198.6 ms ✓ Images 214999.7 ms ✓ ElectroPhysiology 52 dependencies successfully precompiled in 1548 seconds. 186 already precompiled. 2 dependencies had output during precompilation: ┌ LoopVectorization │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in _vreduce(typeof(Base.:(+)), Any) at /home/pkgeval/.julia/packages/LoopVectorization/tIJUA/src/simdfunctionals/mapreduce.jl └ ┌ ImageSegmentation │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in _vreduce(typeof(Base.:(+)), Any) at /home/pkgeval/.julia/packages/LoopVectorization/tIJUA/src/simdfunctionals/mapreduce.jl └ Test Summary: | Pass Total Time Constructing experiments | 5 5 3.2s Test Summary: | Pass Total Time Testing ABF reader | 13 13 19.5s Test Summary: | Pass Total Time Testing Experiment iterator | 6 6 3.3s (1, 10000, 2) Test Summary: | Pass Total Time Experiment Modification | 20 20 18.0s Tests not implemented yet Test Summary: | Pass Total Time Testing data filtering | 3 3 16.2s Precompiling packages... 8218.8 ms ✓ Accessors → IntervalSetsExt 6375.0 ms ✓ Roots 1588.4 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 6959.3 ms ✓ PNGFiles 26776.7 ms ✓ CSV 2385.2 ms ✓ HypergeometricFunctions 14828.3 ms ✓ Sixel 4954.2 ms ✓ LoopVectorization → ForwardDiffExt 1414.1 ms ✓ Roots → RootsChainRulesCoreExt 2143.2 ms ✓ Roots → RootsForwardDiffExt 3227.8 ms ✓ StatsFuns 3724.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 4158.7 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 26753.8 ms ✓ Distributions 12784.1 ms ✓ HypothesisTests 19013.1 ms ✓ LsqFit 6527.1 ms ✓ Distributions → DistributionsChainRulesCoreExt 79810.3 ms ✓ PhysiologyAnalysis 18 dependencies successfully precompiled in 245 seconds. 277 already precompiled. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 158 running 1 of 1 signal (10): User defined signal 1 access at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__fs_work at /workspace/srcdir/libuv/src/unix/fs.c:1633 uv_fs_access at /workspace/srcdir/libuv/src/unix/fs.c:1720 jl_fs_access at /source/src/jl_uv.c:628 ispath at ./stat.jl:376 resolve_depot at ./loading.jl:3375 parse_cache_header at ./loading.jl:3502 sort_by at ./loading.jl:1207 _broadcast_getindex_evalf at ./broadcast.jl:694 [inlined] _broadcast_getindex at ./broadcast.jl:667 [inlined] _getindex at ./broadcast.jl:615 [inlined] getindex at ./broadcast.jl:611 [inlined] macro expansion at ./broadcast.jl:990 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:989 [inlined] copyto! at ./broadcast.jl:942 [inlined] copy at ./broadcast.jl:914 [inlined] materialize at ./broadcast.jl:889 [inlined] find_all_in_cache_path at ./loading.jl:1227 find_all_in_cache_path at ./loading.jl:1183 [inlined] #_precompilepkgs##45 at ./precompilation.jl:898 [inlined] get! at ./dict.jl:458 _precompilepkgs at ./precompilation.jl:898 #precompilepkgs#9 at ./precompilation.jl:423 unknown function (ip: 0x7d0f92710329) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 precompilepkgs at ./precompilation.jl:411 __require_prelocked at ./loading.jl:2652 _require_prelocked at ./loading.jl:2484 _require_prelocked at ./loading.jl:2478 run_extension_callbacks at ./loading.jl:1585 run_extension_callbacks at ./loading.jl:1622 run_package_callbacks at ./loading.jl:1437 #_require_search_from_serialized#868 at ./loading.jl:2140 _require_search_from_serialized at ./loading.jl:2015 jfptr__require_search_from_serialized_69150.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 __require_prelocked at ./loading.jl:2621 _require_prelocked at ./loading.jl:2484 macro expansion at ./loading.jl:2412 [inlined] macro expansion at ./lock.jl:294 [inlined] __require at ./loading.jl:2369 jfptr___require_105280.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] jl_f__call_in_world at /source/src/builtins.c:902 #invoke_in_world#2 at ./essentials.jl:1091 [inlined] invoke_in_world at ./essentials.jl:1087 [inlined] require at ./loading.jl:2361 jfptr_require_105270.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] call_require at /source/src/toplevel.c:521 [inlined] eval_import_path at /source/src/toplevel.c:558 jl_toplevel_eval_flex at /source/src/toplevel.c:882 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:301 IncludeInto at ./Base.jl:302 jfptr_IncludeInto_69051.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 exec_options at ./client.jl:295 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d0f940ba249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Precompiling packages... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 task_done_hook at ./task.jl:839 jfptr_task_done_hook_97764.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] jl_finish_task at /source/src/task.c:345 start_task at /source/src/task.c:1292 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d0f520edff0 Total snapshots: 1. Utilization: 100% ╎1 @Base/precompilation.jl:921 (::Base.Precompilation.var"#_precompilepkgs##4… ╎ 1 @Base/loading.jl:1879 isprecompiled ╎ 1 @Base/loading.jl:1886 #isprecompiled#864 ╎ 1 @Base/loading.jl:1821 compilecache_path ╎ 1 @Base/loading.jl:1831 compilecache_path(pkg::Base.PkgId; ignore_loaded… ╎ 1 @Base/loading.jl:3932 stale_cachefile ╎ ╎ 1 @Base/loading.jl:3933 #stale_cachefile#890 ╎ ╎ 1 @Base/loading.jl:3935 stale_cachefile ╎ ╎ 1 @Base/loading.jl:4039 stale_cachefile(modkey::Base.PkgId, build_id… ╎ ╎ 1 @Base/loading.jl:511 locate_package ╎ ╎ 1 @Base/loading.jl:511 locate_package(pkg::Base.PkgId, stopenv::No… ╎ ╎ ╎ 1 @Base/loading.jl:462 locate_package_env(pkg::Base.PkgId, stopen… ╎ ╎ ╎ 1 @Base/loading.jl:753 manifest_uuid_path(env::String, pkg::Base… ╎ ╎ ╎ 1 @Base/loading.jl:1067 explicit_manifest_uuid_path(project_fil… ╎ ╎ ╎ 1 @Base/loading.jl:511 locate_package(pkg::Base.PkgId) ╎ ╎ ╎ 1 @Base/loading.jl:511 locate_package(pkg::Base.PkgId, stopen… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:462 locate_package_env(pkg::Base.PkgId, s… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:753 manifest_uuid_path(env::String, pkg:… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:1056 explicit_manifest_uuid_path(projec… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:1100 explicit_manifest_entry_path(mani… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:902 entry_path(path::String, name::St… ╎ ╎ ╎ ╎ ╎ 1 @Base/loading.jl:10 isfile_casesensitive ╎ ╎ ╎ ╎ ╎ 1 @Base/loading.jl:97 isaccessiblefile(file::String) ╎ ╎ ╎ ╎ ╎ 1 @Base/stat.jl:586 isfile ╎ ╎ ╎ ╎ ╎ 1 @Base/stat.jl:191 stat(path::String) ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007283f6b62cb0 Total snapshots: 392. Utilization: 0% ╎392 @Base/task.jl:839 task_done_hook(t::Task) ╎ 392 @Base/task.jl:1199 wait() 391╎ 392 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [158] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ElectroPhysiology/X7NA3/test/runtests.jl:21 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 poptask at ./task.jl:1187 wait at ./task.jl:1199 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:326 #626 at ./asyncevent.jl:311 #start_profile_listener##0 at ./Base.jl:346 jfptr_YY.626_98745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 93962330 (Pool: 93961092; Big: 1238); GC: 172 jfptr_YY.start_profile_listenerYY.YY.0_111230.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 28676844 (Pool: 28674904; Big: 1940); GC: 40 Info PkgEval terminated after 2728.78s: test duration exceeded the time limit