Package evaluation of EcologicalNetworksDynamics on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T04:34:44.001 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.87s ################################################################################ # Installation # Installing EcologicalNetworksDynamics... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [2fd9189a] + EcologicalNetworksDynamics v0.2.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [aae01518] + BandedMatrices v1.9.3 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.16.0 [7227322d] + BoundaryValueDiffEqAscher v1.5.0 [56b672f2] + BoundaryValueDiffEqCore v1.8.0 [85d9eb09] + BoundaryValueDiffEqFIRK v1.6.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.6.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.5.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.6.0 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [abce61dc] + Decimals v0.4.1 [bcd4f6db] + DelayDiffEq v5.52.0 [2b5f629d] + DiffEqBase v6.167.0 ⌅ [459566f4] + DiffEqCallbacks v3.9.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [0c46a032] + DifferentialEquations v7.16.1 [a0c0ee7d] + DifferentiationInterface v0.6.48 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [e30172f5] + Documenter v1.9.0 [2fd9189a] + EcologicalNetworksDynamics v0.2.0 [4e289a0a] + EnumX v1.0.4 [f151be2c] + EnzymeCore v0.8.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.5 [9d29842c] + FastAlmostBandedMatrices v0.1.4 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [29a986be] + FastLapackInterface v2.0.4 [a4df4552] + FastPower v1.1.1 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] + Functors v0.4.12 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.4 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [d7ba0133] + Git v1.3.1 [86223c79] + Graphs v1.12.0 [cd3eb016] + HTTP v1.10.15 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + 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nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.94s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: DifferentialEquations Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/home/pkgeval/.julia/compiled/v1.12/DifferentialEquations/jl_raOJEY". WARNING: could not import DiffEqBase.AbstractNonlinearTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbstractSafeBestNonlinearTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbsNormTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbsSafeBestTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbsSafeTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbsTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.NormTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.RelNormTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.RelSafeBestTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.RelSafeTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.RelTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.SimpleNonlinearSolveTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.SteadyStateDiffEqTerminationMode into NonlinearSolve ERROR: LoadError: UndefVarError: `DiffEqArrayOperator` not defined in `LinearSolve` Stacktrace: [1] top-level scope @ ~/.julia/packages/LinearSolve/8iclj/src/default.jl:48 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [3] top-level scope @ ~/.julia/packages/LinearSolve/8iclj/src/LinearSolve.jl:138 [4] include(mod::Module, _path::String) @ Base ./Base.jl:300 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [6] top-level scope @ stdin:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:485 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [9] include_string @ ./loading.jl:2856 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [11] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/8iclj/src/default.jl:48 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/8iclj/src/LinearSolve.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] to "/home/pkgeval/.julia/compiled/v1.12/LinearSolve/jl_bZRvXW". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/NonlinearSolve/sBl1H/src/NonlinearSolve.jl:28 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/NonlinearSolve/sBl1H/src/NonlinearSolve.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile NonlinearSolve [8913a72c-1f9b-4ce2-8d82-65094dcecaec] to "/home/pkgeval/.julia/compiled/v1.12/NonlinearSolve/jl_U1iJER". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/DiffEqCallbacks/n5zrr/src/DiffEqCallbacks.jl:3 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/DiffEqCallbacks/n5zrr/src/DiffEqCallbacks.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile DiffEqCallbacks [459566f4-90b8-5000-8ac3-15dfb0a30def] to "/home/pkgeval/.julia/compiled/v1.12/DiffEqCallbacks/jl_TpXkAu". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/SteadyStateDiffEq/hTUms/src/SteadyStateDiffEq.jl:13 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/SteadyStateDiffEq/hTUms/src/SteadyStateDiffEq.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile SteadyStateDiffEq [9672c7b4-1e72-59bd-8a11-6ac3964bc41f] to "/home/pkgeval/.julia/compiled/v1.12/SteadyStateDiffEq/jl_dvXgRY". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] include(mod::Module, _path::String) @ Base ./Base.jl:300 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [21] top-level scope @ stdin:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:485 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [24] include_string @ ./loading.jl:2856 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [26] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:1 in expression starting at stdin:6 EcologicalNetworksDynamics Failed to precompile EcologicalNetworksDynamics [2fd9189a-c387-4076-88b7-22b33b5a4388] to "/home/pkgeval/.julia/compiled/v1.12/EcologicalNetworksDynamics/jl_SoWLtX". WARNING: could not import DiffEqBase.AbstractNonlinearTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbstractSafeBestNonlinearTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbsNormTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbsSafeBestTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbsSafeTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.AbsTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.NormTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.RelNormTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.RelSafeBestTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.RelSafeTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.RelTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.SimpleNonlinearSolveTerminationMode into NonlinearSolve WARNING: could not import DiffEqBase.SteadyStateDiffEqTerminationMode into NonlinearSolve ERROR: LoadError: UndefVarError: `DiffEqArrayOperator` not defined in `LinearSolve` Stacktrace: [1] top-level scope @ ~/.julia/packages/LinearSolve/8iclj/src/default.jl:48 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [3] top-level scope @ ~/.julia/packages/LinearSolve/8iclj/src/LinearSolve.jl:138 [4] include(mod::Module, _path::String) @ Base ./Base.jl:300 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [6] top-level scope @ stdin:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:485 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [9] include_string @ ./loading.jl:2856 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [11] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/8iclj/src/default.jl:48 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/8iclj/src/LinearSolve.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] to "/home/pkgeval/.julia/compiled/v1.12/LinearSolve/jl_uoo38l". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/NonlinearSolve/sBl1H/src/NonlinearSolve.jl:28 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/NonlinearSolve/sBl1H/src/NonlinearSolve.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile NonlinearSolve [8913a72c-1f9b-4ce2-8d82-65094dcecaec] to "/home/pkgeval/.julia/compiled/v1.12/NonlinearSolve/jl_kk1slt". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/DiffEqCallbacks/n5zrr/src/DiffEqCallbacks.jl:3 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/DiffEqCallbacks/n5zrr/src/DiffEqCallbacks.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile DiffEqCallbacks [459566f4-90b8-5000-8ac3-15dfb0a30def] to "/home/pkgeval/.julia/compiled/v1.12/DiffEqCallbacks/jl_339YUZ". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/SteadyStateDiffEq/hTUms/src/SteadyStateDiffEq.jl:13 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/SteadyStateDiffEq/hTUms/src/SteadyStateDiffEq.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile SteadyStateDiffEq [9672c7b4-1e72-59bd-8a11-6ac3964bc41f] to "/home/pkgeval/.julia/compiled/v1.12/SteadyStateDiffEq/jl_L2n5b3". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] include(mod::Module, _path::String) @ Base ./Base.jl:300 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [21] top-level scope @ stdin:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:485 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [24] include_string @ ./loading.jl:2856 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [26] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/home/pkgeval/.julia/compiled/v1.12/DifferentialEquations/jl_YTfLHj". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/EcologicalNetworksDynamics/R3OJZ/src/Internals/Internals.jl:31 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [21] top-level scope @ ~/.julia/packages/EcologicalNetworksDynamics/R3OJZ/src/EcologicalNetworksDynamics.jl:38 [22] include(mod::Module, _path::String) @ Base ./Base.jl:300 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [24] top-level scope @ stdin:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:485 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [29] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/R3OJZ/src/Internals/Internals.jl:5 in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/R3OJZ/src/EcologicalNetworksDynamics.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2438.31s ################################################################################ # Testing # Testing EcologicalNetworksDynamics Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_iEp3DS/Project.toml` [0c46a032] ↑ DifferentialEquations v7.13.0 ⇒ v7.16.1 [e30172f5] ↑ Documenter v1.3.0 ⇒ v1.9.0 [2fd9189a] + EcologicalNetworksDynamics v0.2.0 [98e50ef6] ↑ JuliaFormatter v1.0.54 ⇒ v1.0.62 [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.15 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.0 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_iEp3DS/Manifest.toml` [47edcb42] ↑ ADTypes v0.2.7 ⇒ v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] ↑ Adapt v4.0.4 ⇒ v4.3.0 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 [ec485272] ↑ ArnoldiMethod v0.2.0 ⇒ v0.4.0 [4fba245c] ↑ ArrayInterface v7.9.0 ⇒ v7.18.0 [4c555306] ↑ ArrayLayouts v1.7.0 ⇒ v1.11.1 [aae01518] ↑ BandedMatrices v1.6.1 ⇒ v1.9.3 [d1d4a3ce] + BitFlags v0.1.9 [62783981] ↑ BitTwiddlingConvenienceFunctions v0.1.5 ⇒ v0.1.6 [764a87c0] ↑ BoundaryValueDiffEq v5.6.3 ⇒ v5.16.0 [7227322d] + BoundaryValueDiffEqAscher v1.5.0 [56b672f2] + BoundaryValueDiffEqCore v1.8.0 [85d9eb09] + BoundaryValueDiffEqFIRK v1.6.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.6.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.5.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.6.0 [2a0fbf3d] ↑ CPUSummary v0.2.4 ⇒ v0.2.6 [00ebfdb7] ↑ CSTParser v3.4.2 ⇒ v3.4.3 [49dc2e85] - Calculus v0.5.1 [d360d2e6] ↑ ChainRulesCore v1.23.0 ⇒ v1.25.1 [fb6a15b2] ↑ CloseOpenIntervals v0.1.12 ⇒ v0.1.13 [944b1d66] ↑ CodecZlib v0.7.4 ⇒ v0.7.8 ⌅ [a80b9123] ↑ CommonMark v0.8.12 ⇒ v0.8.15 [bbf7d656] ↑ CommonSubexpressions v0.3.0 ⇒ v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] ↑ Compat v4.14.0 ⇒ v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] ↑ ConstructionBase v1.5.5 ⇒ v1.5.8 [864edb3b] ↑ DataStructures v0.18.18 ⇒ v0.18.22 ⌅ [abce61dc] + Decimals v0.4.1 [bcd4f6db] ↑ DelayDiffEq v5.47.1 ⇒ v5.52.0 [2b5f629d] ↑ DiffEqBase v6.148.0 ⇒ v6.167.0 ⌅ [459566f4] ↑ DiffEqCallbacks v3.4.0 ⇒ v3.9.1 [77a26b50] ↑ DiffEqNoiseProcess v5.21.0 ⇒ v5.24.1 [0c46a032] ↑ DifferentialEquations v7.13.0 ⇒ v7.16.1 [a0c0ee7d] + DifferentiationInterface v0.6.48 [b4f34e82] ↑ Distances v0.10.11 ⇒ v0.10.12 [31c24e10] ↑ Distributions v0.25.107 ⇒ v0.25.118 [e30172f5] ↑ Documenter v1.3.0 ⇒ v1.9.0 [fa6b7ba4] - DualNumbers v0.6.8 [2fd9189a] + EcologicalNetworksDynamics v0.2.0 [f151be2c] ↑ EnzymeCore v0.6.5 ⇒ v0.8.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] ↑ ExponentialUtilities v1.26.1 ⇒ v1.27.0 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.5 [9d29842c] ↑ FastAlmostBandedMatrices v0.1.0 ⇒ v0.1.4 [7034ab61] ↑ FastBroadcast v0.2.8 ⇒ v0.3.5 [442a2c76] + FastGaussQuadrature v1.0.2 [29a986be] ↑ FastLapackInterface v2.0.2 ⇒ v2.0.4 [a4df4552] + FastPower v1.1.1 [1a297f60] ↑ FillArrays v1.9.3 ⇒ v1.13.0 [6a86dc24] ↑ FiniteDiff v2.23.0 ⇒ v2.27.0 [f6369f11] ↑ ForwardDiff v0.10.36 ⇒ v0.10.38 ⌅ [d9f16b24] ↑ Functors v0.4.8 ⇒ v0.4.12 [46192b85] ↑ GPUArraysCore v0.1.6 ⇒ v0.2.0 [c145ed77] ↑ GenericSchur v0.5.3 ⇒ v0.5.4 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [86223c79] ↑ Graphs v1.9.0 ⇒ v1.12.0 [cd3eb016] + HTTP v1.10.15 [3e5b6fbb] ↑ HostCPUFeatures v0.1.16 ⇒ v0.1.17 [34004b35] ↑ HypergeometricFunctions v0.3.23 ⇒ v0.3.28 [b5f81e59] ↑ IOCapture v0.2.4 ⇒ v0.2.5 [d25df0c9] ↑ Inflate v0.1.4 ⇒ v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] ↑ JuliaFormatter v1.0.54 ⇒ v1.0.62 [ccbc3e58] ↑ JumpProcesses v9.10.1 ⇒ v9.14.2 [ba0b0d4f] ↑ Krylov v0.9.5 ⇒ v0.9.10 [10f19ff3] ↑ LayoutPointers v0.1.15 ⇒ v0.1.17 [0e77f7df] ↑ LazilyInitializedFields v1.2.2 ⇒ v1.3.0 [5078a376] ↑ LazyArrays v1.8.3 ⇒ v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] ↑ LineSearches v7.2.0 ⇒ v7.3.0 ⌅ [7ed4a6bd] ↑ LinearSolve v2.27.0 ⇒ v2.39.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.27 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [bdcacae8] ↑ LoopVectorization v0.12.166 ⇒ v0.12.171 [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.15 [b8b640a6] + Mangal v0.5.1 [a3b82374] ↑ MatrixFactorizations v2.1.0 ⇒ v3.0.1 [bb5d69b7] ↑ MaybeInplace v0.1.1 ⇒ v0.1.4 [739be429] + MbedTLS v1.1.9 [e1d29d7a] ↑ Missings v1.1.0 ⇒ v1.2.0 [2e0e35c7] + Moshi v0.3.5 [d41bc354] ↑ NLSolversBase v7.8.3 ⇒ v7.9.0 [77ba4419] ↑ NaNMath v1.0.2 ⇒ v1.1.2 ⌅ [8913a72c] ↑ NonlinearSolve v3.8.1 ⇒ v3.15.1 [be0214bd] + NonlinearSolveBase v1.5.0 [5959db7a] + NonlinearSolveFirstOrder v1.3.0 [6fe1bfb0] ↑ OffsetArrays v1.13.0 ⇒ v1.16.0 [4d8831e6] + OpenSSL v1.4.3 [429524aa] ↑ Optim v1.9.3 ⇒ v1.11.0 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.0 [1dea7af3] ↑ OrdinaryDiffEq v6.74.1 ⇒ v6.93.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] + OrdinaryDiffEqBDF v1.3.0 [bbf590c4] + OrdinaryDiffEqCore v1.20.0 [50262376] + OrdinaryDiffEqDefault v1.3.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.4.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.4.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.9.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.3.0 [521117fe] + OrdinaryDiffEqLinear v1.1.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.5.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.3.0 [5b33eab2] + OrdinaryDiffEqPRK v1.1.0 [04162be5] + OrdinaryDiffEqQPRK v1.1.0 [af6ede74] + OrdinaryDiffEqRKN v1.1.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.8.0 [2d112036] + OrdinaryDiffEqSDIRK v1.3.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.2.1 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.3.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] + OrdinaryDiffEqVerner v1.1.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.32 [f517fe37] ↑ Polyester v0.7.10 ⇒ v0.7.16 [1d0040c9] ↑ PolyesterWeave v0.2.1 ⇒ v0.2.2 [d236fae5] ↑ PreallocationTools v0.4.20 ⇒ v0.4.25 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] ↑ QuadGK v2.9.4 ⇒ v2.11.2 [e6cf234a] ↑ RandomNumbers v1.5.3 ⇒ v1.6.0 [731186ca] ↑ RecursiveArrayTools v3.12.0 ⇒ v3.31.1 [f2c3362d] ↑ RecursiveFactorization v0.2.21 ⇒ v0.2.23 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0 [7e49a35a] ↑ RuntimeGeneratedFunctions v0.5.12 ⇒ v0.5.13 [476501e8] ↑ SLEEFPirates v0.6.42 ⇒ v0.6.43 [0bca4576] ↑ SciMLBase v2.30.2 ⇒ v2.79.0 [19f34311] + SciMLJacobianOperators v0.1.1 [c0aeaf25] ↑ SciMLOperators v0.3.8 ⇒ v0.3.13 [53ae85a6] ↑ SciMLStructures v1.1.0 ⇒ v1.7.0 [efcf1570] ↑ Setfield v1.1.1 ⇒ v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 ⌅ [727e6d20] ↑ SimpleNonlinearSolve v1.6.0 ⇒ v1.12.3 [9f842d2f] + SparseConnectivityTracer v0.6.15 [47a9eef4] ↑ SparseDiffTools v2.17.0 ⇒ v2.24.0 [0a514795] + SparseMatrixColorings v0.4.14 [276daf66] ↑ SpecialFunctions v2.3.1 ⇒ v2.5.0 [aedffcd0] ↑ Static v0.8.10 ⇒ v1.2.0 [0d7ed370] ↑ StaticArrayInterface v1.5.0 ⇒ v1.8.0 [90137ffa] ↑ StaticArrays v1.9.3 ⇒ v1.9.13 [1e83bf80] ↑ StaticArraysCore v1.4.2 ⇒ v1.4.3 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [2913bbd2] ↑ StatsBase v0.34.2 ⇒ v0.34.4 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.3.2 [9672c7b4] ↑ SteadyStateDiffEq v2.1.0 ⇒ v2.5.0 [789caeaf] ↑ StochasticDiffEq v6.65.1 ⇒ v6.74.1 [7792a7ef] ↑ StrideArraysCore v0.5.2 ⇒ v0.5.7 [f22f4433] + StringCases v0.1.0 [c3572dad] ↑ Sundials v4.24.0 ⇒ v4.27.0 [2efcf032] ↑ SymbolicIndexingInterface v0.3.11 ⇒ v0.3.38 [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.0 [1c621080] + TestItems v1.0.0 [a759f4b9] ↑ TimerOutputs v0.5.23 ⇒ v0.5.28 [0796e94c] ↑ Tokenize v0.5.28 ⇒ v0.5.29 [3bb67fe8] ↑ TranscodingStreams v0.10.6 ⇒ v0.11.3 [d5829a12] ↑ TriangularSolve v0.1.20 ⇒ v0.2.1 [410a4b4d] - Tricks v0.1.8 [3d5dd08c] ↑ VectorizationBase v0.21.65 ⇒ v0.21.71 [2e619515] ↑ Expat_jll v2.5.0+0 ⇒ v2.6.5+0 [f8c6e375] ↑ Git_jll v2.44.0+1 ⇒ v2.47.1+0 [1d5cc7b8] ↑ IntelOpenMP_jll v2024.0.2+0 ⇒ v2025.0.4+0 [94ce4f54] ↑ Libiconv_jll v1.17.0+0 ⇒ v1.18.0+0 [856f044c] ↑ MKL_jll v2024.0.0+0 ⇒ v2025.0.1+1 [458c3c95] ↑ OpenSSL_jll v3.0.13+0 ⇒ v3.0.16+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.0+0 ⇒ v0.5.1+0 ⌅ [fb77eaff] ↑ Sundials_jll v5.2.2+0 ⇒ v5.2.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] ~ Distributed ⇒ v1.11.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] ~ LazyArtifacts ⇒ v1.11.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.12.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] ~ SharedArrays ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.0+0 ⇒ v1.2.0+0 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.6.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.8.0+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.6+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2024.11.26 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.28+3 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.1+3 [efcefdf7] ↑ PCRE2_jll v10.42.0+1 ⇒ v10.44.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.8.0+1 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.11.2+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.63.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_iEp3DS/Project.toml` [a8cc5b0e] Crayons v4.1.1 [0c46a032] DifferentialEquations v7.16.1 [e30172f5] Documenter v1.9.0 [2fd9189a] EcologicalNetworksDynamics v0.2.0 [98e50ef6] JuliaFormatter v1.0.62 [1914dd2f] MacroTools v0.5.15 [bac558e1] OrderedCollections v1.8.0 [10745b16] Statistics v1.11.1 [a4af3ec5] SyntaxTree v1.0.1 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_iEp3DS/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [aae01518] BandedMatrices v1.9.3 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] BoundaryValueDiffEq v5.16.0 [7227322d] BoundaryValueDiffEqAscher v1.5.0 [56b672f2] BoundaryValueDiffEqCore v1.8.0 [85d9eb09] BoundaryValueDiffEqFIRK v1.6.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.6.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.5.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.6.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [00ebfdb7] CSTParser v3.4.3 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.15 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [abce61dc] Decimals v0.4.1 [bcd4f6db] DelayDiffEq v5.52.0 [2b5f629d] DiffEqBase v6.167.0 ⌅ [459566f4] DiffEqCallbacks v3.9.1 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.16.1 [a0c0ee7d] DifferentiationInterface v0.6.48 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [e30172f5] Documenter v1.9.0 [2fd9189a] EcologicalNetworksDynamics v0.2.0 [4e289a0a] EnumX v1.0.4 [f151be2c] EnzymeCore v0.8.8 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.5 [9d29842c] FastAlmostBandedMatrices v0.1.4 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [29a986be] FastLapackInterface v2.0.4 [a4df4552] FastPower v1.1.1 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] Functors v0.4.12 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.4 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [d7ba0133] Git v1.3.1 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.12.0 [cd3eb016] HTTP v1.10.15 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v1.0.62 [ccbc3e58] JumpProcesses v9.14.2 [ef3ab10e] KLU v0.6.0 [ba0b0d4f] Krylov v0.9.10 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [5078a376] LazyArrays v2.6.1 [2d8b4e74] LevyArea v1.0.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.3.0 ⌅ [7ed4a6bd] LinearSolve v2.39.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [bdcacae8] LoopVectorization v0.12.171 [1914dd2f] MacroTools v0.5.15 [b8b640a6] Mangal v0.5.1 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [a3b82374] MatrixFactorizations v3.0.1 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.9.0 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.2 ⌅ [8913a72c] NonlinearSolve v3.15.1 [be0214bd] NonlinearSolveBase v1.5.0 [5959db7a] NonlinearSolveFirstOrder v1.3.0 [6fe1bfb0] OffsetArrays v1.16.0 [4d8831e6] OpenSSL v1.4.3 [429524aa] Optim v1.11.0 [bac558e1] OrderedCollections v1.8.0 [1dea7af3] OrdinaryDiffEq v6.93.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.3.0 [bbf590c4] OrdinaryDiffEqCore v1.20.0 [50262376] OrdinaryDiffEqDefault v1.3.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.4.0 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.4.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] OrdinaryDiffEqFIRK v1.9.0 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.3.0 [521117fe] OrdinaryDiffEqLinear v1.1.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.5.0 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.3.0 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.1.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.8.0 [2d112036] OrdinaryDiffEqSDIRK v1.3.0 [669c94d9] OrdinaryDiffEqSSPRK v1.2.1 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.3.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] OrdinaryDiffEqVerner v1.1.1 [90014a1f] PDMats v0.11.32 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [e409e4f3] PoissonRandom v0.4.4 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.25 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.0 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.31.1 [f2c3362d] RecursiveFactorization v0.2.23 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [0bca4576] SciMLBase v2.79.0 [19f34311] SciMLJacobianOperators v0.1.1 [c0aeaf25] SciMLOperators v0.3.13 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 ⌅ [727e6d20] SimpleNonlinearSolve v1.12.3 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [9f842d2f] SparseConnectivityTracer v0.6.15 [47a9eef4] SparseDiffTools v2.24.0 [0a514795] SparseMatrixColorings v0.4.14 [e56a9233] Sparspak v0.3.9 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [9672c7b4] SteadyStateDiffEq v2.5.0 [789caeaf] StochasticDiffEq v6.74.1 [7792a7ef] StrideArraysCore v0.5.7 [f22f4433] StringCases v0.1.0 [c3572dad] Sundials v4.27.0 [2efcf032] SymbolicIndexingInterface v0.3.38 [a4af3ec5] SyntaxTree v1.0.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [1c621080] TestItems v1.0.0 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.28 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [d5829a12] TriangularSolve v0.2.1 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.5.1 [3a884ed6] UnPack v1.0.2 [3d5dd08c] VectorizationBase v0.21.71 [19fa3120] VertexSafeGraphs v0.2.0 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.47.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.0.1+1 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [fb77eaff] Sundials_jll v5.2.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [efcefdf7] PCRE2_jll v10.44.0+0 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ LinearSolve ✗ SimpleNonlinearSolve ✗ LinearSolve → LinearSolveFastAlmostBandedMatricesExt ✗ LinearSolve → LinearSolveEnzymeExt ✗ LinearSolve → LinearSolveRecursiveArrayToolsExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 683 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] #copyuntil#640 at ./stream.jl:1047 copyuntil at ./stream.jl:1031 [inlined] #copyuntil#327 at ./io.jl:464 [inlined] copyuntil at ./io.jl:464 [inlined] #copyline#389 at ./iobuffer.jl:625 [inlined] copyline at ./iobuffer.jl:624 [inlined] #readline#350 at ./io.jl:619 readline at ./io.jl:619 [inlined] monitor_std at ./precompilation.jl:764 monitor_std at ./precompilation.jl:759 jfptr_monitor_std_69435.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #_precompilepkgs##49 at ./precompilation.jl:928 jfptr_YY._precompilepkgsYY.YY.49_105726.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007747af0d4cd0 Total snapshots: 61. Utilization: 0% ╎61 @Base/precompilation.jl:928 (::Base.Precompilation.var"#_precompilepkgs#… ╎ 61 @Base/precompilation.jl:759 kwcall(::@NamedTuple{single_requested_pkg::… ╎ 61 @Base/precompilation.jl:764 (::Base.Precompilation.var"#monitor_std#_p… ╎ 61 @Base/io.jl:619 readline ╎ 61 @Base/io.jl:619 readline(s::Pipe; keep::Bool) ╎ 61 @Base/iobuffer.jl:624 copyline ╎ ╎ 61 @Base/iobuffer.jl:625 #copyline#389 ╎ ╎ 61 @Base/io.jl:464 copyuntil ╎ ╎ 61 @Base/io.jl:464 #copyuntil#327 ╎ ╎ 61 @Base/stream.jl:1031 copyuntil ╎ ╎ 61 @Base/stream.jl:1047 copyuntil(out::IOBuffer, x::Base.PipeEndp… ╎ ╎ ╎ 61 @Base/condition.jl:136 wait ╎ ╎ ╎ 61 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Th… ╎ ╎ ╎ 61 @Base/task.jl:1199 wait() 60╎ ╎ ╎ 61 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSync… ✗ LinearSolve → LinearSolveBandedMatricesExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_97191.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2377 unknown function (ip: 0x7d7e9997dcb3) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #201 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2317 withenv at ./env.jl:265 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2138 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1996 #182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2105 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x7d7e999766fc) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#178 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2052 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2044 unknown function (ip: 0x7d7e9996d231) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2302 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:460 unknown function (ip: 0x7d7e9996c431) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 unknown function (ip: 0x7d7e99966508) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:148 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 unknown function (ip: 0x7d7e9996182f) at (unknown file) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] do_call at /source/src/interpreter.c:125 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:687 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:896 jl_toplevel_eval_flex at /source/src/toplevel.c:1070 jl_toplevel_eval_flex at /source/src/toplevel.c:1010 ijl_toplevel_eval at /source/src/toplevel.c:1082 ijl_toplevel_eval_in at /source/src/toplevel.c:1127 eval at ./boot.jl:485 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 _include at ./loading.jl:2906 include at ./Base.jl:300 exec_options at ./client.jl:329 _start at ./client.jl:558 jfptr__start_108457.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] true_main at /source/src/jlapi.c:922 jl_repl_entrypoint at /source/src/jlapi.c:1081 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d7e9b846249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d7e8d600010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:558 _start() ╎ 1 @Base/client.jl:329 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:300 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2906 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2846 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:485 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:146 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:147 test ╎ ╎ 1 @Pkg/src/API.jl:147 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:148 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159 test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2214 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2302 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2044 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2052 #sandbox#178 ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#18… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2105 (::Pkg.Operations.var"#182#183"… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:1996 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2138 (::Pkg.Operations.var"#186#187… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265 withenv(::Pkg.Operations.var"#201… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2317 (::Pkg.Operations.var"#201#20… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2377 subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:694 wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:141 wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1199 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1187 poptask(W::Base.Intrusiv… [683] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/R3OJZ/test/dedicate_test_failures.jl:7 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 poptask at ./task.jl:1187 wait at ./task.jl:1199 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:326 #626 at ./asyncevent.jl:311 jfptr_YY.626_98745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #start_profile_listener##0 at ./Base.jl:346 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 79001626 (Pool: 79001341; Big: 285); GC: 159 jfptr_YY.start_profile_listenerYY.YY.0_111230.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 34556344 (Pool: 34555631; Big: 713); GC: 33 PkgEval terminated after 2747.01s: test duration exceeded the time limit