Package evaluation of DeepCompartmentModels on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T03:31:13.024 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.8s ################################################################################ # Installation # Installing DeepCompartmentModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [398c52f8] + DeepCompartmentModels v1.1.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [a9b6321e] + Atomix v1.1.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.1.1 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [7057c7e9] + Cassette v0.3.14 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b0b7db55] + ComponentArrays v0.15.25 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [398c52f8] + DeepCompartmentModels v1.1.1 [2b5f629d] + DiffEqBase v6.167.0 [459566f4] + DiffEqCallbacks v4.3.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.48 [8d63f2c5] + DispatchDoctor v0.4.19 [31c24e10] + Distributions v0.25.118 [ced4e74d] + DistributionsAD v0.6.57 [ffbed154] + DocStringExtensions v0.9.3 [4e289a0a] + EnumX v1.0.4 [7da242da] + Enzyme v0.13.34 [f151be2c] + EnzymeCore v0.8.8 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.1 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v0.10.38 [f62d2435] + FunctionProperties v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [0c68f7d7] + GPUArrays v11.2.2 [46192b85] + GPUArraysCore v0.2.0 [61eb1bfa] + GPUCompiler v1.2.0 [c145ed77] + GenericSchur v0.5.4 [86223c79] + Graphs v1.12.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.14 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.34 [ba0b0d4f] + Krylov v0.9.10 [929cbde3] + LLVM v9.2.0 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.3.0 [7ed4a6bd] + LinearSolve v3.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌃ [b2108857] + Lux 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[b1df2697] + OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] + OrdinaryDiffEqVerner v1.1.1 [90014a1f] + PDMats v0.11.32 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [570af359] + PartialFunctions v1.2.0 [e409e4f3] + PoissonRandom v0.4.4 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.25 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.0 [e6cf234a] + RandomNumbers v1.6.0 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.31.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [37e2e3b7] + ReverseDiff v1.15.3 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.79.0 [19f34311] + SciMLJacobianOperators v0.1.1 [c0aeaf25] + SciMLOperators v0.3.13 [1ed8b502] + SciMLSensitivity v7.75.0 [53ae85a6] + SciMLStructures v1.7.0 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.2.1 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.2.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 ⌃ [47a9eef4] + SparseDiffTools v2.23.1 [dc90abb0] + SparseInverseSubset v0.1.2 [0a514795] + SparseMatrixColorings v0.4.14 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [7792a7ef] + StrideArraysCore v0.5.7 [09ab397b] + StructArrays v0.7.0 [53d494c1] + StructIO v0.3.1 [2efcf032] + SymbolicIndexingInterface v0.3.38 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + 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[8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.07s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 7 direct dependencies failed to precompile: LuxEnzymeExt Failed to precompile LuxEnzymeExt [62b4f266-0f73-59bd-b052-909f1b357fe2] to "/home/pkgeval/.julia/compiled/v1.12/LuxEnzymeExt/jl_wtU338". ERROR: LoadError: UndefVarError: `collectinvokes!` not defined in `Compiler` Stacktrace: [1] getproperty @ ./Base_compiler.jl:47 [inlined] [2] ci_cache_populate(interp::GPUCompiler.GPUInterpreter, cache::Compiler.WorldView{Compiler.InternalCodeCache}, mi::Core.MethodInstance, min_world::UInt64, max_world::UInt64) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/jlgen.jl:504 [3] compile_method_instance(job::GPUCompiler.CompilerJob) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/jlgen.jl:597 [4] irgen(job::GPUCompiler.CompilerJob) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/irgen.jl:4 [5] emit_llvm(job::GPUCompiler.CompilerJob; toplevel::Bool, libraries::Bool, optimize::Bool, cleanup::Bool, validate::Bool, only_entry::Bool) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:171 [6] emit_llvm @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:159 [inlined] [7] #codegen#110 @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:100 [inlined] [8] codegen @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:82 [inlined] [9] compile(target::Symbol, job::GPUCompiler.CompilerJob; kwargs::@Kwargs{libraries::Bool}) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:79 [10] compile @ ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:74 [inlined] [11] #184 @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:35 [inlined] [12] JuliaContext(f::GPUCompiler.var"#184#185"{GPUCompiler.CompilerJob{GPUCompiler.NativeCompilerTarget, GPUCompiler.var"##455".DummyCompilerParams}}; kwargs::@Kwargs{}) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:34 [13] JuliaContext(f::Function) @ GPUCompiler ~/.julia/packages/GPUCompiler/OGnEB/src/driver.jl:25 [14] macro expansion @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:32 [inlined] [15] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [16] macro expansion @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:25 [inlined] [17] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [18] top-level scope @ ~/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:139 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [20] top-level scope @ ~/.julia/packages/GPUCompiler/OGnEB/src/GPUCompiler.jl:51 [21] include(mod::Module, _path::String) @ Base ./Base.jl:300 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:485 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [28] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/OGnEB/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/OGnEB/src/GPUCompiler.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile GPUCompiler [61eb1bfa-7361-4325-ad38-22787b887f55] to "/home/pkgeval/.julia/compiled/v1.12/GPUCompiler/jl_peFek9". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [20] top-level scope @ ~/.julia/packages/Enzyme/owyQj/src/Enzyme.jl:124 [21] include(mod::Module, _path::String) @ Base ./Base.jl:300 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:485 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [28] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Enzyme/owyQj/src/typetree.jl:6 in expression starting at /home/pkgeval/.julia/packages/Enzyme/owyQj/src/Enzyme.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.12/Enzyme/jl_RVeU8o". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/Lux/H3WdN/ext/LuxEnzymeExt/LuxEnzymeExt.jl:4 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/ext/LuxEnzymeExt/LuxEnzymeExt.jl:1 in expression starting at stdin:6 LuxComponentArraysExt Failed to precompile LuxComponentArraysExt [cd58414c-6947-508b-bab7-2d29592a9eee] to "/home/pkgeval/.julia/compiled/v1.12/LuxComponentArraysExt/jl_2C0PUs". ERROR: LoadError: cannot declare Lux.recursive_add!! exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [2] top-level scope @ ~/.julia/packages/Lux/H3WdN/src/Lux.jl:88 [3] include(mod::Module, _path::String) @ Base ./Base.jl:300 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:485 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [8] include_string @ ./loading.jl:2856 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [10] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/deprecations.jl:2 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/Lux.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Lux [b2108857-7c20-44ae-9111-449ecde12c47] to "/home/pkgeval/.julia/compiled/v1.12/Lux/jl_q3K5f5". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/Lux/H3WdN/ext/LuxComponentArraysExt.jl:4 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/ext/LuxComponentArraysExt.jl:1 in expression starting at stdin:6 LuxTrackerExt Failed to precompile LuxTrackerExt [bc9bbe9f-33ca-5eb8-a5c4-64163ea7759c] to "/home/pkgeval/.julia/compiled/v1.12/LuxTrackerExt/jl_9Q55KQ". ERROR: LoadError: cannot declare Lux.recursive_add!! exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [2] top-level scope @ ~/.julia/packages/Lux/H3WdN/src/Lux.jl:88 [3] include(mod::Module, _path::String) @ Base ./Base.jl:300 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:485 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [8] include_string @ ./loading.jl:2856 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [10] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/deprecations.jl:2 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/Lux.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Lux [b2108857-7c20-44ae-9111-449ecde12c47] to "/home/pkgeval/.julia/compiled/v1.12/Lux/jl_0c4C4z". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/Lux/H3WdN/ext/LuxTrackerExt/LuxTrackerExt.jl:11 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/ext/LuxTrackerExt/LuxTrackerExt.jl:1 in expression starting at stdin:6 Lux Failed to precompile Lux [b2108857-7c20-44ae-9111-449ecde12c47] to "/home/pkgeval/.julia/compiled/v1.12/Lux/jl_Y5S0DC". ERROR: LoadError: cannot declare Lux.recursive_add!! exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [2] top-level scope @ ~/.julia/packages/Lux/H3WdN/src/Lux.jl:88 [3] include(mod::Module, _path::String) @ Base ./Base.jl:300 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:485 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [8] include_string @ ./loading.jl:2856 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [10] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/deprecations.jl:2 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/Lux.jl:1 in expression starting at stdin:6 LuxReverseDiffExt Failed to precompile LuxReverseDiffExt [d98d9bb9-39dc-5aec-9550-f511f2c702dc] to "/home/pkgeval/.julia/compiled/v1.12/LuxReverseDiffExt/jl_btgV33". ERROR: LoadError: cannot declare Lux.recursive_add!! exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [2] top-level scope @ ~/.julia/packages/Lux/H3WdN/src/Lux.jl:88 [3] include(mod::Module, _path::String) @ Base ./Base.jl:300 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:485 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [8] include_string @ ./loading.jl:2856 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [10] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/deprecations.jl:2 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/Lux.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Lux [b2108857-7c20-44ae-9111-449ecde12c47] to "/home/pkgeval/.julia/compiled/v1.12/Lux/jl_S5Ifgr". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/Lux/H3WdN/ext/LuxReverseDiffExt/LuxReverseDiffExt.jl:12 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/ext/LuxReverseDiffExt/LuxReverseDiffExt.jl:1 in expression starting at stdin:6 DeepCompartmentModels Failed to precompile DeepCompartmentModels [398c52f8-e6e0-45bd-bf73-2340696b0a8e] to "/home/pkgeval/.julia/compiled/v1.12/DeepCompartmentModels/jl_fNmW6Q". ERROR: LoadError: cannot declare Lux.recursive_add!! exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [2] top-level scope @ ~/.julia/packages/Lux/H3WdN/src/Lux.jl:88 [3] include(mod::Module, _path::String) @ Base ./Base.jl:300 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:485 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [8] include_string @ ./loading.jl:2856 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [10] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/deprecations.jl:2 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/Lux.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Lux [b2108857-7c20-44ae-9111-449ecde12c47] to "/home/pkgeval/.julia/compiled/v1.12/Lux/jl_tZKejT". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] include(mod::Module, _path::String) @ Base ./Base.jl:300 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [21] top-level scope @ stdin:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:485 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [24] include_string @ ./loading.jl:2856 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [26] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/DeepCompartmentModels/hyVWK/src/DeepCompartmentModels.jl:1 in expression starting at stdin:6 LuxZygoteExt Failed to precompile LuxZygoteExt [df13723f-0f22-5fb0-8a8f-885eac2ce1ee] to "/home/pkgeval/.julia/compiled/v1.12/LuxZygoteExt/jl_FCZQWk". ERROR: LoadError: cannot declare Lux.recursive_add!! exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [2] top-level scope @ ~/.julia/packages/Lux/H3WdN/src/Lux.jl:88 [3] include(mod::Module, _path::String) @ Base ./Base.jl:300 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2995 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:485 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [8] include_string @ ./loading.jl:2856 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [10] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/deprecations.jl:2 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/Lux.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Lux [b2108857-7c20-44ae-9111-449ecde12c47] to "/home/pkgeval/.julia/compiled/v1.12/Lux/jl_HBWf1F". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3279 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2673 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest#1 @ ./essentials.jl:1058 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3850 [10] maybe_cachefile_lock @ ./loading.jl:3847 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2659 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [13] macro expansion @ ./loading.jl:2412 [inlined] [14] macro expansion @ ./lock.jl:294 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2369 [16] #invoke_in_world#2 @ ./essentials.jl:1091 [inlined] [17] invoke_in_world @ ./essentials.jl:1087 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2361 [19] top-level scope @ ~/.julia/packages/Lux/H3WdN/ext/LuxZygoteExt/LuxZygoteExt.jl:10 [20] include(mod::Module, _path::String) @ Base ./Base.jl:300 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:485 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [27] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/ext/LuxZygoteExt/LuxZygoteExt.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1878.47s ################################################################################ # Testing # Testing DeepCompartmentModels Status `/tmp/jl_skB6pn/Project.toml` [b0b7db55] ComponentArrays v0.15.25 [398c52f8] DeepCompartmentModels v1.1.1 [31c24e10] Distributions v0.25.118 [ced4e74d] DistributionsAD v0.6.57 [6a86dc24] FiniteDiff v2.27.0 ⌃ [b2108857] Lux v1.4.0 [429524aa] Optim v1.11.0 ⌅ [3bd65402] Optimisers v0.3.4 [1dea7af3] OrdinaryDiffEq v6.93.0 [570af359] PartialFunctions v1.2.0 [189a3867] Reexport v1.2.2 [37e2e3b7] ReverseDiff v1.15.3 [0bca4576] SciMLBase v2.79.0 [1ed8b502] SciMLSensitivity v7.75.0 [10745b16] Statistics v1.11.1 ⌅ [e88e6eb3] Zygote v0.6.75 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_skB6pn/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.1.1 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [7057c7e9] Cassette v0.3.14 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [b0b7db55] ComponentArrays v0.15.25 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [398c52f8] DeepCompartmentModels v1.1.1 [2b5f629d] DiffEqBase v6.167.0 [459566f4] DiffEqCallbacks v4.3.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.48 [8d63f2c5] DispatchDoctor v0.4.19 [31c24e10] Distributions v0.25.118 [ced4e74d] DistributionsAD v0.6.57 [ffbed154] DocStringExtensions v0.9.3 [4e289a0a] EnumX v1.0.4 [7da242da] Enzyme v0.13.34 [f151be2c] EnzymeCore v0.8.8 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.1 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v0.10.38 [f62d2435] FunctionProperties v0.1.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.2.0 [c145ed77] GenericSchur v0.5.4 [86223c79] Graphs v1.12.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [7869d1d1] IRTools v0.4.14 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [ae98c720] Jieko v0.2.1 [63c18a36] KernelAbstractions v0.9.34 [ba0b0d4f] Krylov v0.9.10 [929cbde3] LLVM v9.2.0 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.1 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.3.0 [7ed4a6bd] LinearSolve v3.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [b2108857] Lux v1.4.0 [bb33d45b] LuxCore v1.2.3 [82251201] LuxLib v1.6.2 [7e8f7934] MLDataDevices v1.9.1 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.9.0 [872c559c] NNlib v0.9.29 [77ba4419] NaNMath v1.1.2 [8913a72c] NonlinearSolve v4.5.0 [be0214bd] NonlinearSolveBase v1.5.0 [5959db7a] NonlinearSolveFirstOrder v1.3.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.2.0 [26075421] NonlinearSolveSpectralMethods v1.1.0 [d8793406] ObjectFile v0.4.4 [429524aa] Optim v1.11.0 ⌅ [3bd65402] Optimisers v0.3.4 [bac558e1] OrderedCollections v1.8.0 [1dea7af3] OrdinaryDiffEq v6.93.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.3.0 [bbf590c4] OrdinaryDiffEqCore v1.20.0 [50262376] OrdinaryDiffEqDefault v1.3.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.4.0 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.4.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] OrdinaryDiffEqFIRK v1.9.0 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.3.0 [521117fe] OrdinaryDiffEqLinear v1.1.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.5.0 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.3.0 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.1.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.8.0 [2d112036] OrdinaryDiffEqSDIRK v1.3.0 [669c94d9] OrdinaryDiffEqSSPRK v1.2.1 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.3.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] OrdinaryDiffEqVerner v1.1.1 [90014a1f] PDMats v0.11.32 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [570af359] PartialFunctions v1.2.0 [e409e4f3] PoissonRandom v0.4.4 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.25 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.0 [e6cf234a] RandomNumbers v1.6.0 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.31.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.1.1 [37e2e3b7] ReverseDiff v1.15.3 [79098fc4] Rmath v0.8.0 [7e49a35a] 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v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Loading local DeepCompartmentModels package...Precompiling packages... Info Given Lux was explicitly requested, output will be shown live  ERROR: LoadError: cannot declare Lux.recursive_add!! exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:301  [2] top-level scope  @ ~/.julia/packages/Lux/H3WdN/src/Lux.jl:88  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:300  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2995  [5] top-level scope  @ stdin:6  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:485  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [8] include_string  @ ./loading.jl:2856 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:327  [10] _start()  @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/deprecations.jl:2 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/Lux.jl:1 in expression starting at stdin:6 ✗ Lux 0 dependencies successfully precompiled in 35 seconds. 109 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: Lux Failed to precompile Lux [b2108857-7c20-44ae-9111-449ecde12c47] to "/home/pkgeval/.julia/compiled/v1.12/Lux/jl_gPaCio". ERROR: LoadError: cannot declare Lux.recursive_add!! exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [2] top-level scope @ ~/.julia/packages/Lux/H3WdN/src/Lux.jl:88 [3] include(mod::Module, _path::String) @ Base ./Base.jl:300 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2995 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:485 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [8] include_string @ ./loading.jl:2856 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:327 [10] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/deprecations.jl:2 in expression starting at /home/pkgeval/.julia/packages/Lux/H3WdN/src/Lux.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/DeepCompartmentModels/hyVWK/src/DeepCompartmentModels.jl:1 in expression starting at /home/pkgeval/.julia/packages/DeepCompartmentModels/hyVWK/test/runtests.jl:1 Testing failed after 50.09s ERROR: LoadError: Package DeepCompartmentModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1986.07s: package fails to precompile