Package evaluation of ControlledHiddenMarkovModels on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T15:45:39.582 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.92s ################################################################################ # Installation # Installing ControlledHiddenMarkovModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [7732c362] + ControlledHiddenMarkovModels v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [7732c362] + ControlledHiddenMarkovModels v0.1.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b429d917] + DensityInterface v0.4.0 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Installation completed after 4.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 36.35s ################################################################################ # Testing # Testing ControlledHiddenMarkovModels Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_09Voys/Project.toml` [4c88cf16] ↑ Aqua v0.5.5 ⇒ v0.8.11 [b0b7db55] ↑ ComponentArrays v0.13.1 ⇒ v0.15.25 [7732c362] + ControlledHiddenMarkovModels v0.1.0 [31c24e10] ↑ Distributions v0.25.66 ⇒ v0.25.118 [e30172f5] ↑ Documenter v0.27.22 ⇒ v1.9.0 [f6369f11] ↑ ForwardDiff v0.10.32 ⇒ v0.10.38 [98e50ef6] ↑ JuliaFormatter v1.0.9 ⇒ v1.0.62 [aa2f6b4e] ↑ LogarithmicNumbers v1.2.1 ⇒ v1.4.0 [7f7a1694] ↑ Optimization v3.8.2 ⇒ v4.1.2 [36348300] ↑ OptimizationOptimJL v0.1.2 ⇒ v0.4.1 [af0b7596] ↑ PointProcesses v0.3.1 ⇒ v0.5.0 [10745b16] + Statistics v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_09Voys/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [1520ce14] ↑ AbstractTrees v0.3.4 ⇒ v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] ↑ Adapt v3.4.0 ⇒ v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4c88cf16] ↑ Aqua v0.5.5 ⇒ v0.8.11 [4fba245c] ↑ ArrayInterface v6.0.22 ⇒ v7.18.0 [30b0a656] - ArrayInterfaceCore v0.1.17 [dd5226c6] - ArrayInterfaceStaticArraysCore v0.1.0 [00ebfdb7] ↑ CSTParser v3.3.6 ⇒ v3.4.3 [49dc2e85] - Calculus v0.5.1 [d360d2e6] ↑ ChainRulesCore v1.15.3 ⇒ v1.25.1 [9e997f8a] - ChangesOfVariables v0.1.4 [944b1d66] + CodecZlib v0.7.8 ⌅ [a80b9123] ↑ CommonMark v0.8.6 ⇒ v0.8.15 [38540f10] ↑ CommonSolve v0.2.1 ⇒ v0.2.4 [bbf7d656] ↑ CommonSubexpressions v0.3.0 ⇒ v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] ↑ Compat v3.45.0 ⇒ v4.16.0 [b0b7db55] ↑ ComponentArrays v0.13.1 ⇒ v0.15.25 [a33af91c] + CompositionsBase v0.1.2 [187b0558] ↑ ConstructionBase v1.4.0 ⇒ v1.5.8 [7732c362] + ControlledHiddenMarkovModels v0.1.0 [9a962f9c] ↑ DataAPI v1.10.0 ⇒ v1.16.0 [864edb3b] ↑ DataStructures v0.18.13 ⇒ v0.18.22 [8bb1440f] - DelimitedFiles [163ba53b] ↑ DiffResults v1.0.3 ⇒ v1.1.0 [b552c78f] ↑ DiffRules v1.11.0 ⇒ v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.48 [31c24e10] ↑ Distributions v0.25.66 ⇒ v0.25.118 [ffbed154] ↑ DocStringExtensions v0.9.1 ⇒ v0.9.3 [e30172f5] ↑ Documenter v0.27.22 ⇒ v1.9.0 [fa6b7ba4] - DualNumbers v0.6.8 [4e289a0a] + EnumX v1.0.4 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [9aa1b823] + FastClosures v0.3.2 [1a297f60] ↑ FillArrays v0.13.2 ⇒ v1.13.0 [6a86dc24] ↑ FiniteDiff v2.15.0 ⇒ v2.27.0 [f6369f11] ↑ ForwardDiff v0.10.32 ⇒ v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] ↑ GPUArraysCore v0.1.1 ⇒ v0.2.0 [d7ba0133] + Git v1.3.1 [c27321d9] + Glob v1.3.1 [34004b35] ↑ HypergeometricFunctions v0.3.11 ⇒ v0.3.28 [b5f81e59] ↑ IOCapture v0.2.2 ⇒ v0.2.5 [3587e190] ↑ InverseFunctions v0.1.7 ⇒ v0.1.17 [92d709cd] ↑ IrrationalConstants v0.1.1 ⇒ v0.2.4 [692b3bcd] ↑ JLLWrappers v1.4.1 ⇒ v1.7.0 [682c06a0] ↑ JSON v0.21.3 ⇒ v0.21.4 [ae98c720] + Jieko v0.2.1 [98e50ef6] ↑ JuliaFormatter v1.0.9 ⇒ v1.0.62 [5be7bae1] + LBFGSB v0.4.1 [0e77f7df] + LazilyInitializedFields v1.3.0 [1d6d02ad] ↑ LeftChildRightSiblingTrees v0.1.3 ⇒ v0.2.0 [d3d80556] ↑ LineSearches v7.1.1 ⇒ v7.3.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.17 ⇒ v0.3.29 [aa2f6b4e] ↑ LogarithmicNumbers v1.2.1 ⇒ v1.4.0 [e6f89c97] ↑ LoggingExtras v0.4.9 ⇒ v1.1.0 [1914dd2f] ↑ MacroTools v0.5.9 ⇒ v0.5.15 [d0879d2d] + MarkdownAST v0.1.2 [e1d29d7a] ↑ Missings v1.0.2 ⇒ v1.2.0 [2e0e35c7] + Moshi v0.3.5 [d41bc354] ↑ NLSolversBase v7.8.2 ⇒ v7.9.0 [77ba4419] ↑ NaNMath v0.3.7 ⇒ v1.1.2 [429524aa] ↑ Optim v1.7.1 ⇒ v1.11.0 [7f7a1694] ↑ Optimization v3.8.2 ⇒ v4.1.2 [bca83a33] + OptimizationBase v2.5.0 [36348300] ↑ OptimizationOptimJL v0.1.2 ⇒ v0.4.1 [bac558e1] ↑ OrderedCollections v1.4.1 ⇒ v1.8.0 [90014a1f] ↑ PDMats v0.11.16 ⇒ v0.11.32 [69de0a69] ↑ Parsers v2.3.2 ⇒ v2.8.1 [af0b7596] ↑ PointProcesses v0.3.1 ⇒ v0.5.0 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] ↑ Preferences v1.3.0 ⇒ v1.4.3 [92933f4c] ↑ ProgressMeter v1.7.2 ⇒ v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] ↑ QuadGK v2.4.2 ⇒ v2.11.2 [3cdcf5f2] ↑ RecipesBase v1.2.1 ⇒ v1.3.4 [731186ca] ↑ RecursiveArrayTools v2.31.2 ⇒ v3.31.1 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] ↑ Rmath v0.7.0 ⇒ v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [0bca4576] ↑ SciMLBase v1.47.0 ⇒ v2.79.0 [c0aeaf25] + SciMLOperators v0.3.13 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] ↑ Setfield v1.1.0 ⇒ v1.1.2 [a2af1166] ↑ SortingAlgorithms v1.0.1 ⇒ v1.2.1 [9f842d2f] + SparseConnectivityTracer v0.6.15 [0a514795] + SparseMatrixColorings v0.4.14 [276daf66] ↑ SpecialFunctions v2.1.7 ⇒ v2.5.0 [aedffcd0] ↑ Static v0.7.6 ⇒ v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] - StaticArrays v1.5.2 [1e83bf80] ↑ StaticArraysCore v1.0.1 ⇒ v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] ↑ StatsAPI v1.5.0 ⇒ v1.7.0 [2913bbd2] ↑ StatsBase v0.33.21 ⇒ v0.34.4 [4c63d2b9] ↑ StatsFuns v1.0.1 ⇒ v1.3.2 [2efcf032] + SymbolicIndexingInterface v0.3.38 [bd369af6] ↑ Tables v1.7.0 ⇒ v1.12.0 [5d786b92] ↑ TerminalLoggers v0.1.5 ⇒ v0.1.7 [0796e94c] ↑ Tokenize v0.5.24 ⇒ v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] - URIs v1.4.0 [700de1a5] - ZygoteRules v0.2.2 [2e619515] + Expat_jll v2.6.5+0 [f8c6e375] + Git_jll v2.47.1+0 [81d17ec3] + L_BFGS_B_jll v3.0.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.3.0+0 ⇒ v0.5.1+0 [0dad84c5] ~ ArgTools ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] ~ Distributed ⇒ v1.11.0 [f43a241f] ~ Downloads ⇒ v1.6.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] ~ LibCURL ⇒ v0.6.4 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ~ NetworkOptions ⇒ v1.2.0 [44cfe95a] ~ Pkg ⇒ v1.12.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ~ SHA ⇒ v0.7.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] - SharedArrays [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ~ SparseArrays ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] ~ TOML ⇒ v1.0.3 [a4e569a6] ~ Tar ⇒ v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ~ CompilerSupportLibraries_jll ⇒ v1.2.0+0 [deac9b47] ~ LibCURL_jll ⇒ v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] ~ LibSSH2_jll ⇒ v1.11.0+1 [c8ffd9c3] ~ MbedTLS_jll ⇒ v2.28.6+1 [14a3606d] ~ MozillaCACerts_jll ⇒ v2024.11.26 [4536629a] ~ OpenBLAS_jll ⇒ v0.3.28+3 [05823500] ~ OpenLibm_jll ⇒ v0.8.1+3 [efcefdf7] + PCRE2_jll v10.44.0+0 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] ~ Zlib_jll ⇒ v1.3.1+1 [8e850b90] ~ libblastrampoline_jll ⇒ v5.11.2+0 [8e850ede] ~ nghttp2_jll ⇒ v1.63.0+1 [3f19e933] ~ p7zip_jll ⇒ v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_09Voys/Project.toml` [4c88cf16] Aqua v0.8.11 [b0b7db55] ComponentArrays v0.15.25 [7732c362] ControlledHiddenMarkovModels v0.1.0 [31c24e10] Distributions v0.25.118 [e30172f5] Documenter v1.9.0 [f6369f11] ForwardDiff v0.10.38 [98e50ef6] JuliaFormatter v1.0.62 [aa2f6b4e] LogarithmicNumbers v1.4.0 [7f7a1694] Optimization v4.1.2 [36348300] OptimizationOptimJL v0.4.1 [af0b7596] PointProcesses v0.5.0 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_09Voys/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [4fba245c] ArrayInterface v7.18.0 [00ebfdb7] CSTParser v3.4.3 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.15 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [b0b7db55] ComponentArrays v0.15.25 [a33af91c] CompositionsBase v0.1.2 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.8 [7732c362] ControlledHiddenMarkovModels v0.1.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.48 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [e30172f5] Documenter v1.9.0 [4e289a0a] EnumX v1.0.4 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [9aa1b823] FastClosures v0.3.2 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.3.1 [c27321d9] Glob v1.3.1 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v1.0.62 [5be7bae1] LBFGSB v0.4.1 [0e77f7df] LazilyInitializedFields v1.3.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [aa2f6b4e] LogarithmicNumbers v1.4.0 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [d0879d2d] MarkdownAST v0.1.2 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [d41bc354] NLSolversBase v7.9.0 [77ba4419] NaNMath v1.1.2 [429524aa] Optim v1.11.0 [7f7a1694] Optimization v4.1.2 [bca83a33] OptimizationBase v2.5.0 [36348300] OptimizationOptimJL v0.4.1 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [af0b7596] PointProcesses v0.5.0 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [33c8b6b6] ProgressLogging v0.1.4 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.31.1 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [0bca4576] SciMLBase v2.79.0 [c0aeaf25] SciMLOperators v0.3.13 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [9f842d2f] SparseConnectivityTracer v0.6.15 [0a514795] SparseMatrixColorings v0.4.14 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [2efcf032] SymbolicIndexingInterface v0.3.38 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [5d786b92] TerminalLoggers v0.1.7 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.47.1+0 [81d17ec3] L_BFGS_B_jll v3.0.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [14a3606d] MozillaCACerts_jll v2024.11.26 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [efcefdf7] PCRE2_jll v10.44.0+0 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 [8e850ede] nghttp2_jll v1.63.0+1 [3f19e933] p7zip_jll v17.5.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") does not declare a compat entry for the following deps: 2-element Vector{Base.PkgId}: LinearAlgebra [37e2e46d-f89d-539d-b4ee-838fcccc9c8e] Random [9a3f8284-a2c9-5f02-9a11-845980a1fd5c] Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") deps: Test Failed at /home/pkgeval/.julia/packages/Aqua/epbUr/src/deps_compat.jl:60 Expression: isempty(result) Evaluated: isempty(Base.PkgId[Base.PkgId(Base.UUID("37e2e46d-f89d-539d-b4ee-838fcccc9c8e"), "LinearAlgebra"), Base.PkgId(Base.UUID("9a3f8284-a2c9-5f02-9a11-845980a1fd5c"), "Random")]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] [2] test_deps_compat(pkg::Base.PkgId, deps_type::String; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/epbUr/src/deps_compat.jl:60 [3] test_deps_compat @ ~/.julia/packages/Aqua/epbUr/src/deps_compat.jl:55 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/epbUr/src/deps_compat.jl:41 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [6] test_deps_compat(pkg::Base.PkgId; check_julia::Bool, check_extras::Bool, check_weakdeps::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/epbUr/src/deps_compat.jl:41 Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") does not declare a compat entry for the following extras: 1-element Vector{Base.PkgId}: Test [8dfed614-e22c-5e08-85e1-65c5234f0b40] Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") extras: Test Failed at /home/pkgeval/.julia/packages/Aqua/epbUr/src/deps_compat.jl:60 Expression: isempty(result) Evaluated: isempty(Base.PkgId[Base.PkgId(Base.UUID("8dfed614-e22c-5e08-85e1-65c5234f0b40"), "Test")]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] [2] test_deps_compat(pkg::Base.PkgId, deps_type::String; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/epbUr/src/deps_compat.jl:60 [3] test_deps_compat @ ~/.julia/packages/Aqua/epbUr/src/deps_compat.jl:55 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/epbUr/src/deps_compat.jl:45 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [6] test_deps_compat(pkg::Base.PkgId; check_julia::Bool, check_extras::Bool, check_weakdeps::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/epbUr/src/deps_compat.jl:45 ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/QLA7E/src/utilities/utilities.jl:655 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Vanilla HMM: Error During Test at /home/pkgeval/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:27 Got exception outside of a @test LoadError: UndefVarError: `add_suffstats` not defined in `PointProcesses` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:47 [inlined] [2] fit_from_multiple_sequences(D::Type{MultivariatePoissonProcess{Float64}}, xs::Base.Generator{UnitRange{Int64}, ControlledHiddenMarkovModels.var"#41#42"{Vector{Vector{History{Int64, Float64}}}}}, ws::Base.Generator{UnitRange{Int64}, ControlledHiddenMarkovModels.var"#43#44"{Vector{Matrix{Float64}}, Int64}}) @ Main ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/hmm.jl:88 [3] macro expansion @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:43 [inlined] [4] macro expansion @ ~/.julia/packages/ProgressLogging/6KXlp/src/ProgressLogging.jl:470 [inlined] [5] baum_welch_multiple_sequences!(obs_densities::Vector{Matrix{Float64}}, fb_storage::ControlledHiddenMarkovModels.ForwardBackwardStorage{Float64}, obs_sequences::Vector{Vector{History{Int64, Float64}}}, hmm_init::HiddenMarkovModel{LogFloat32, LogFloat32, MultivariatePoissonProcess{Float64}}, par::Nothing; max_iterations::Int64, tol::Float64) @ ControlledHiddenMarkovModels ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:21 [6] baum_welch_multiple_sequences! @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:1 [inlined] [7] #baum_welch_multiple_sequences#45 @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:70 [inlined] [8] baum_welch_multiple_sequences @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:64 [inlined] [9] top-level scope @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/hmm.jl:111 [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [11] top-level scope @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:18 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [13] macro expansion @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:28 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [15] macro expansion @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:28 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [17] top-level scope @ none:6 [18] eval(m::Module, e::Any) @ Core ./boot.jl:485 [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [20] _start() @ Base ./client.jl:558 in expression starting at /home/pkgeval/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/hmm.jl:111 Test Summary: | Pass Fail Error Total Time ControlledHiddenMarkovModels.jl | 16 2 1 19 8m27.0s Code quality (Aqua.jl) | 8 2 10 59.8s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.5s Stale dependencies | 1 1 7.8s Compat bounds | 2 2 4 11.2s julia | 1 1 0.1s Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") deps | 1 1 11.1s Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") extras | 1 1 0.0s Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") weakdeps | 1 1 0.0s Piracy | 1 1 0.3s Persistent tasks | 1 1 25.2s Formatting | 1 1 1m08.3s Doctests | 1 1 43.4s Doctests: ControlledHiddenMarkovModels | 1 1 41.6s Vanilla HMM | 4 1 5 4m42.1s Controlled HMM | 2 2 53.3s ERROR: LoadError: Some tests did not pass: 16 passed, 2 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:17 Testing failed after 585.69s ERROR: LoadError: Package ControlledHiddenMarkovModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 659.56s: package tests unexpectedly errored