Package evaluation of BioCCP on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T15:26:55.235 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.3s ################################################################################ # Installation # Installing BioCCP... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [79e6b149] + BioCCP v0.1.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [79e6b149] + BioCCP v0.1.1 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Installation completed after 4.02s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 24.78s ################################################################################ # Testing # Testing BioCCP Cloning git-repo `https://github.com/kirstvh/BioCCP` Status `/tmp/jl_dMMt8A/Project.toml` [79e6b149] BioCCP v0.1.0 `https://github.com/kirstvh/BioCCP#main` [8dfed614] Test v1.11.0 Status `/tmp/jl_dMMt8A/Manifest.toml` [79e6b149] BioCCP v0.1.0 `https://github.com/kirstvh/BioCCP#main` [2a0f44e3] Base64 v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [8dfed614] Test v1.11.0 Testing Running tests... Precompiling packages... 846.9 ms ✓ BioCCP 1 dependency successfully precompiled in 1 seconds Expectation: Test Failed at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:17 Expression: expectation_minsamplesize(n; p = p_uniform) isa Int64 Evaluated: 72.0 isa Int64 Stacktrace: [1] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:17 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [5] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:17 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] Standard deviation: Test Failed at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:25 Expression: std_minsamplesize(n; p = p_uniform) isa Int64 Evaluated: 24.0 isa Int64 Stacktrace: [1] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:25 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [5] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:25 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] Probability occurence: Error During Test at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 Test threw exception Expression: prob_occurrence_module(pᵢ, t, r, k) isa Float64 MethodError: no method matching prob_occurrence_module(::Float64, ::Int64, ::Int64, ::Int64) The function `prob_occurrence_module` exists, but no method is defined for this combination of argument types. Closest candidates are: prob_occurrence_module(::Any, ::Any, ::Any) @ BioCCP ~/.julia/packages/BioCCP/QzG6a/src/BioCCP.jl:243 Stacktrace: [1] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [3] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [5] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] Probability occurence: Error During Test at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:57 Test threw exception Expression: all(prob_occurrence_module.(pᵢ, [0, 10, 100, 1000, 10000], r, k) .>= 0) MethodError: no method matching prob_occurrence_module(::Float64, ::Int64, ::Int64, ::Int64) The function `prob_occurrence_module` exists, but no method is defined for this combination of argument types. Closest candidates are: prob_occurrence_module(::Any, ::Any, ::Any) @ BioCCP ~/.julia/packages/BioCCP/QzG6a/src/BioCCP.jl:243 Stacktrace: [1] _broadcast_getindex_evalf @ ./broadcast.jl:694 [inlined] [2] _broadcast_getindex @ ./broadcast.jl:667 [inlined] [3] _getindex @ ./broadcast.jl:690 [inlined] [4] _broadcast_getindex @ ./broadcast.jl:666 [inlined] [5] _getindex @ ./broadcast.jl:615 [inlined] [6] getindex @ ./broadcast.jl:611 [inlined] [7] copy @ ./broadcast.jl:928 [inlined] [8] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(>=), Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(prob_occurrence_module), Tuple{Float64, Vector{Int64}, Int64, Int64}}, Int64}}) @ Base.Broadcast ./broadcast.jl:889 [9] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [11] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [13] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:57 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] [15] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:57 [inlined] Probability occurence: Error During Test at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:58 Test threw exception Expression: all(prob_occurrence_module.(pᵢ, [0, 10, 100, 1000, 10000], r, k) .<= 1) MethodError: no method matching prob_occurrence_module(::Float64, ::Int64, ::Int64, ::Int64) The function `prob_occurrence_module` exists, but no method is defined for this combination of argument types. Closest candidates are: prob_occurrence_module(::Any, ::Any, ::Any) @ BioCCP ~/.julia/packages/BioCCP/QzG6a/src/BioCCP.jl:243 Stacktrace: [1] _broadcast_getindex_evalf @ ./broadcast.jl:694 [inlined] [2] _broadcast_getindex @ ./broadcast.jl:667 [inlined] [3] _getindex @ ./broadcast.jl:690 [inlined] [4] _broadcast_getindex @ ./broadcast.jl:666 [inlined] [5] _getindex @ ./broadcast.jl:615 [inlined] [6] getindex @ ./broadcast.jl:611 [inlined] [7] copy @ ./broadcast.jl:928 [inlined] [8] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(<=), Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(prob_occurrence_module), Tuple{Float64, Vector{Int64}, Int64, Int64}}, Int64}}) @ Base.Broadcast ./broadcast.jl:889 [9] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [11] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [13] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:58 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:676 [inlined] [15] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:58 [inlined] Test Summary: | Pass Fail Error Total Time BioCCP | 17 2 3 22 16.1s Expectation | 4 1 5 6.4s Standard deviation | 2 1 3 0.2s Success probability | 6 6 0.8s Expected fraction collected | 5 5 1.0s Probability occurence | 3 3 6.6s ERROR: LoadError: Some tests did not pass: 17 passed, 2 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:3 in expression starting at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/runtests.jl:3 Testing failed after 25.79s ERROR: LoadError: Package BioCCP errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 80.0s: package tests unexpectedly errored