Package evaluation of BigWig on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T14:05:59.640 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.76s ################################################################################ # Installation # Installing BigWig... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [9d649c22] + BigWig v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [67c07d97] + Automa v0.8.4 [19670fab] + BBI v0.2.1 [9d649c22] + BigWig v0.1.0 [37cfa864] + BioCore v2.0.5 [47718e42] + BioGenerics v0.1.5 [e1450e63] + BufferedStreams v1.2.2 [34da2185] + Compat v4.16.0 [864edb3b] + DataStructures v0.18.22 ⌅ [899a7d2d] + GenomicFeatures v2.1.0 [524e6230] + IntervalTrees v1.1.0 [692b3bcd] + JLLWrappers v1.7.0 [2ec943e9] + Libz v1.0.1 [bac558e1] + OrderedCollections v1.8.0 [21216c6a] + Preferences v1.4.3 [69024149] + StringEncodings v0.3.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [ddb6d928] + YAML v0.4.13 [94ce4f54] + Libiconv_jll v1.18.0+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 2.47s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 19.99s ################################################################################ # Testing # Testing BigWig Status `/tmp/jl_aH1fBM/Project.toml` [19670fab] BBI v0.2.1 [9d649c22] BigWig v0.1.0 [37cfa864] BioCore v2.0.5 [e1450e63] BufferedStreams v1.2.2 [3372ea36] FormatSpecimens v1.3.1 ⌅ [899a7d2d] GenomicFeatures v2.1.0 [2ec943e9] Libz v1.0.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_aH1fBM/Manifest.toml` ⌅ [67c07d97] Automa v0.8.4 [19670fab] BBI v0.2.1 [9d649c22] BigWig v0.1.0 [37cfa864] BioCore v2.0.5 [47718e42] BioGenerics v0.1.5 [e1450e63] BufferedStreams v1.2.2 [34da2185] Compat v4.16.0 [864edb3b] DataStructures v0.18.22 [3372ea36] FormatSpecimens v1.3.1 ⌅ [899a7d2d] GenomicFeatures v2.1.0 [524e6230] IntervalTrees v1.1.0 [692b3bcd] JLLWrappers v1.7.0 [2ec943e9] Libz v1.0.1 [bac558e1] OrderedCollections v1.8.0 [21216c6a] Preferences v1.4.3 [69024149] StringEncodings v0.3.7 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [ddb6d928] YAML v0.4.13 [94ce4f54] Libiconv_jll v1.18.0+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... empty: Error During Test at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 Got exception outside of a @test EOFError: read end of file Stacktrace: [1] peek @ ./iobuffer.jl:229 [inlined] [2] read @ ./iobuffer.jl:239 [inlined] [3] read(io::IOBuffer, ::Type{BBI.Header}) @ BBI ~/.julia/packages/BBI/9fptT/src/header.jl:26 [4] BigWig.Reader(input::IOBuffer) @ BigWig ~/.julia/packages/BigWig/J8jWa/src/reader.jl:34 [5] top-level scope @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [7] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:10 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [9] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:14 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:485 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [14] _start() @ Base ./client.jl:558 small: Error During Test at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:18 Got exception outside of a @test EOFError: read end of file Stacktrace: [1] peek @ ./iobuffer.jl:229 [inlined] [2] read @ ./iobuffer.jl:239 [inlined] [3] read(io::IOBuffer, ::Type{BBI.Header}) @ BBI ~/.julia/packages/BBI/9fptT/src/header.jl:26 [4] BigWig.Reader(input::IOBuffer) @ BigWig ~/.julia/packages/BigWig/J8jWa/src/reader.jl:34 [5] top-level scope @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [7] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:19 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [9] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:24 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:485 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [14] _start() @ Base ./client.jl:558 large: Error During Test at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:96 Got exception outside of a @test EOFError: read end of file Stacktrace: [1] peek @ ./iobuffer.jl:229 [inlined] [2] read @ ./iobuffer.jl:239 [inlined] [3] read(io::IOBuffer, ::Type{BBI.Header}) @ BBI ~/.julia/packages/BBI/9fptT/src/header.jl:26 [4] BigWig.Reader(input::IOBuffer) @ BigWig ~/.julia/packages/BigWig/J8jWa/src/reader.jl:34 [5] top-level scope @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [7] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:97 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [9] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:113 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:485 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [14] _start() @ Base ./client.jl:558 round trip: Error During Test at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:133 Got exception outside of a @test EOFError: read end of file Stacktrace: [1] peek @ ./iobuffer.jl:229 [inlined] [2] read @ ./iobuffer.jl:239 [inlined] [3] read(io::IOBuffer, ::Type{BBI.Header}) @ BBI ~/.julia/packages/BBI/9fptT/src/header.jl:26 [4] BigWig.Reader(input::IOBuffer) @ BigWig ~/.julia/packages/BigWig/J8jWa/src/reader.jl:34 [5] (::var"#test_round_trip#test_round_trip##0")(filepath::String) @ Main ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:148 [6] top-level scope @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [8] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:134 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1724 [inlined] [10] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:162 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:301 [12] top-level scope @ none:6 [13] eval(m::Module, e::Any) @ Core ./boot.jl:485 [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:295 [15] _start() @ Base ./client.jl:558 Test Summary: | Error Total Time BigWig | 4 4 40.3s empty | 1 1 11.2s small | 1 1 1.1s large | 1 1 0.6s round trip | 1 1 27.4s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 4 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:8 Testing failed after 50.01s ERROR: LoadError: Package BigWig errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2359 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2214 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:159 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:147 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:146 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:300 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:558 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 110.1s: package tests unexpectedly errored